Wall clock time and date at job start Wed Apr 1 2020 05:24:49 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53005 * 1 3 3 C 1.52993 * 109.46942 * 2 1 4 4 H 1.09006 * 109.47267 * 57.92799 * 3 2 1 5 5 C 1.53006 * 109.47157 * 177.92110 * 3 2 1 6 6 N 1.46899 * 109.47482 * 297.92376 * 3 2 1 7 7 C 1.46899 * 110.99917 * 297.15636 * 6 3 2 8 8 C 1.52998 * 109.47014 * 89.05463 * 7 6 3 9 9 C 1.38540 * 110.99917 * 173.20450 * 6 3 2 10 10 N 1.31245 * 126.38148 * 11.64557 * 9 6 3 11 11 N 1.28509 * 110.10064 * 180.02562 * 10 9 6 12 12 C 1.31221 * 109.95344 * 0.02562 * 11 10 9 13 13 C 1.47957 * 126.46964 * 180.02562 * 12 11 10 14 14 C 1.36712 * 126.93512 * 359.97160 * 13 12 11 15 15 N 1.35210 * 106.01347 * 179.97438 * 14 13 12 16 16 C 1.46501 * 125.72467 * 179.97438 * 15 14 13 17 17 C 1.53001 * 109.46842 * 125.00386 * 16 15 14 18 18 C 1.50702 * 109.47176 * 179.97438 * 17 16 15 19 19 H 1.08002 * 119.99790 * 0.02562 * 18 17 16 20 20 C 1.37871 * 120.00399 * 179.97438 * 18 17 16 21 21 N 1.31512 * 120.00288 * 180.02562 * 20 18 17 22 22 Si 1.86809 * 119.99726 * 0.02562 * 20 18 17 23 23 H 1.48500 * 109.46872 * 89.99524 * 22 20 18 24 24 H 1.48496 * 109.47130 * 209.99918 * 22 20 18 25 25 H 1.48500 * 109.46888 * 330.00050 * 22 20 18 26 26 N 1.28642 * 108.54050 * 0.02562 * 15 14 13 27 27 N 1.28608 * 110.53994 * 359.71486 * 26 15 14 28 28 N 1.36607 * 126.37693 * 191.34241 * 9 6 3 29 29 C 1.46499 * 127.17144 * 359.95600 * 28 9 6 30 30 H 1.09000 * 109.46938 * 300.00020 * 1 2 3 31 31 H 1.09005 * 109.46853 * 59.99828 * 1 2 3 32 32 H 1.09002 * 109.47520 * 179.97438 * 1 2 3 33 33 H 1.09000 * 109.46938 * 239.99979 * 2 1 3 34 34 H 1.08995 * 109.46770 * 120.00180 * 2 1 3 35 35 H 1.08991 * 109.47452 * 179.97438 * 5 3 2 36 36 H 1.09001 * 109.47193 * 300.00509 * 5 3 2 37 37 H 1.09006 * 109.46470 * 60.00200 * 5 3 2 38 38 H 1.09006 * 109.47108 * 209.05584 * 7 6 3 39 39 H 1.09004 * 109.47254 * 329.05425 * 7 6 3 40 40 H 1.08998 * 109.47332 * 310.52239 * 8 7 6 41 41 H 1.09006 * 109.47072 * 70.52395 * 8 7 6 42 42 H 1.09002 * 109.46988 * 190.52300 * 8 7 6 43 43 H 1.07993 * 126.99197 * 0.02942 * 14 13 12 44 44 H 1.09004 * 109.46999 * 245.00428 * 16 15 14 45 45 H 1.08995 * 109.47511 * 5.00385 * 16 15 14 46 46 H 1.08992 * 109.46962 * 299.99970 * 17 16 15 47 47 H 1.09009 * 109.46841 * 59.99838 * 17 16 15 48 48 H 0.97003 * 119.99484 * 180.02562 * 21 20 18 49 49 H 1.09000 * 109.47114 * 95.21029 * 29 28 9 50 50 H 1.09006 * 109.46698 * 215.21006 * 29 28 9 51 51 H 1.09002 * 109.47406 * 335.20915 * 29 28 9 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6466 1.9669 0.8709 5 6 3.5691 1.4428 0.0523 6 7 1.5917 2.1204 -1.2237 7 6 2.1588 1.4801 -2.4180 8 6 1.2264 0.3621 -2.8886 9 6 1.9054 3.4693 -1.1873 10 7 2.6979 4.0613 -0.3247 11 7 2.7666 5.3191 -0.5791 12 6 2.0212 5.6068 -1.6199 13 6 1.8351 6.9438 -2.2257 14 6 2.4017 8.1181 -1.8146 15 7 1.9473 9.0683 -2.6624 16 6 2.2869 10.4926 -2.6123 17 6 2.8467 10.9312 -3.9669 18 6 3.1956 12.3964 -3.9157 19 1 3.0345 12.9584 -3.0076 20 6 3.7213 13.0193 -5.0277 21 7 4.0262 14.2978 -4.9827 22 14 4.0006 12.0471 -6.5982 23 1 2.7819 12.1127 -7.4443 24 1 5.1500 12.6246 -7.3400 25 1 4.2916 10.6310 -6.2586 26 7 1.1658 8.5120 -3.5196 27 7 1.0780 7.2485 -3.2966 28 7 1.4519 4.4300 -2.0460 29 6 0.5450 4.2455 -3.1817 30 1 -0.3633 0.5138 0.8900 31 1 -0.3633 0.5139 -0.8900 32 1 -0.3634 -1.0277 -0.0005 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8899 35 1 3.9325 2.4704 0.0519 36 1 3.9018 0.9398 0.9603 37 1 3.9625 0.9183 -0.8185 38 1 2.2670 2.2207 -3.2106 39 1 3.1356 1.0611 -2.1765 40 1 0.9689 -0.2762 -2.0434 41 1 0.3180 0.7976 -3.3050 42 1 1.7280 -0.2318 -3.6528 43 1 3.0758 8.2580 -0.9826 44 1 1.3921 11.0717 -2.3841 45 1 3.0356 10.6606 -1.8381 46 1 3.7415 10.3521 -4.1950 47 1 2.0980 10.7632 -4.7411 48 1 4.3957 14.7360 -5.7653 49 1 -0.4769 4.4602 -2.8693 50 1 0.8288 4.9230 -3.9870 51 1 0.6085 3.2158 -3.5338 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001262917395.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:49 Heat of formation + Delta-G solvation = 180.931357 kcal Electronic energy + Delta-G solvation = -30735.092672 eV Core-core repulsion = 26708.677167 eV Total energy + Delta-G solvation = -4026.415505 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -44.45907 -43.95966 -40.21677 -36.95035 -36.14331 -34.88454 -34.30544 -33.14202 -32.43542 -32.23076 -30.38780 -29.32160 -28.33119 -27.66100 -25.08589 -24.89405 -24.05734 -23.67436 -22.73119 -22.40346 -21.43099 -20.55024 -19.38142 -18.71764 -17.88678 -17.78292 -17.55424 -17.26026 -16.75856 -16.34039 -16.07720 -15.54306 -15.24902 -15.22096 -14.84836 -14.80455 -14.66101 -14.53165 -14.30174 -13.85266 -13.72956 -13.59096 -13.27747 -13.16144 -12.97586 -12.87522 -12.63561 -12.53152 -12.45561 -12.39646 -12.25536 -12.00183 -11.97154 -11.94095 -11.63945 -11.58666 -11.55777 -11.30472 -11.27321 -11.17612 -11.01065 -10.83399 -10.24557 -9.19726 -8.35950 -6.41423 0.07683 0.62747 0.99034 1.24462 1.31908 1.34826 1.38839 1.43473 1.98915 2.29222 2.48901 2.74081 2.99918 3.44925 3.57769 3.68542 3.73888 3.85215 3.96448 4.09701 4.10439 4.15486 4.22884 4.25158 4.29755 4.36746 4.41727 4.51311 4.53541 4.56758 4.60936 4.66371 4.72929 4.84543 4.86275 4.88847 4.94686 4.98379 5.03931 5.12907 5.18648 5.23261 5.25627 5.36975 5.40173 5.42915 5.49161 5.60494 5.63393 5.76654 6.09803 6.13579 6.66154 7.23957 7.26775 7.54087 8.79063 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.024050 B = 0.002010 C = 0.001967 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1163.960441 B =13930.423051 C =14230.990907 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.150 4.150 2 C -0.119 4.119 3 C 0.098 3.902 4 H 0.074 0.926 5 C -0.191 4.191 6 N -0.439 5.439 7 C 0.037 3.963 8 C -0.161 4.161 9 C 0.368 3.632 10 N -0.335 5.335 11 N -0.287 5.287 12 C 0.259 3.741 13 C 0.020 3.980 14 C 0.018 3.982 15 N -0.273 5.273 16 C 0.129 3.871 17 C -0.016 4.016 18 C -0.529 4.529 19 H 0.058 0.942 20 C 0.020 3.980 21 N -0.937 5.937 22 Si 0.937 3.063 23 H -0.269 1.269 24 H -0.282 1.282 25 H -0.259 1.259 26 N -0.097 5.097 27 N -0.271 5.271 28 N -0.466 5.466 29 C 0.079 3.921 30 H 0.042 0.958 31 H 0.062 0.938 32 H 0.064 0.936 33 H 0.089 0.911 34 H 0.083 0.917 35 H 0.063 0.937 36 H 0.076 0.924 37 H 0.065 0.935 38 H 0.062 0.938 39 H 0.073 0.927 40 H 0.091 0.909 41 H 0.061 0.939 42 H 0.076 0.924 43 H 0.230 0.770 44 H 0.109 0.891 45 H 0.133 0.867 46 H 0.021 0.979 47 H 0.025 0.975 48 H 0.269 0.731 49 H 0.088 0.912 50 H 0.091 0.909 51 H 0.113 0.887 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.014 -33.260 7.738 34.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.156 4.156 3 C -0.009 4.009 4 H 0.092 0.908 5 C -0.250 4.250 6 N -0.163 5.163 7 C -0.089 4.089 8 C -0.218 4.218 9 C 0.011 3.989 10 N -0.181 5.181 11 N -0.129 5.129 12 C -0.009 4.009 13 C -0.120 4.120 14 C -0.137 4.137 15 N -0.065 5.065 16 C 0.010 3.990 17 C -0.054 4.054 18 C -0.567 4.567 19 H 0.076 0.924 20 C -0.179 4.179 21 N -0.577 5.577 22 Si 0.762 3.238 23 H -0.194 1.194 24 H -0.207 1.207 25 H -0.183 1.183 26 N -0.077 5.077 27 N -0.139 5.139 28 N -0.159 5.159 29 C -0.063 4.063 30 H 0.061 0.939 31 H 0.081 0.919 32 H 0.083 0.917 33 H 0.107 0.893 34 H 0.102 0.898 35 H 0.081 0.919 36 H 0.095 0.905 37 H 0.083 0.917 38 H 0.080 0.920 39 H 0.091 0.909 40 H 0.110 0.890 41 H 0.080 0.920 42 H 0.095 0.905 43 H 0.246 0.754 44 H 0.127 0.873 45 H 0.151 0.849 46 H 0.039 0.961 47 H 0.043 0.957 48 H 0.078 0.922 49 H 0.107 0.893 50 H 0.110 0.890 51 H 0.131 0.869 Dipole moment (debyes) X Y Z Total from point charges -6.472 -32.744 7.476 34.204 hybrid contribution 0.766 0.457 -0.912 1.276 sum -5.706 -32.287 6.564 33.438 Atomic orbital electron populations 1.21793 0.95050 1.01818 1.02076 1.21885 0.96839 0.92906 1.03985 1.21785 0.94466 0.95567 0.89104 0.90756 1.22598 0.95881 1.03488 1.02990 1.59179 1.56588 0.93887 1.06688 1.22587 0.99086 0.97871 0.89395 1.22293 0.99258 0.97346 1.02874 1.22816 0.94670 0.90912 0.90453 1.74544 1.18321 1.00086 1.25119 1.74229 1.18684 1.07879 1.12150 1.20829 0.99069 0.85109 0.95855 1.18559 1.04608 0.90307 0.98507 1.24031 1.03365 0.86448 0.99848 1.47792 1.28509 1.11636 1.18526 1.22481 1.03553 0.71134 1.01821 1.19701 0.96525 0.95659 0.93518 1.21089 1.42435 0.93541 0.99685 0.92424 1.25727 0.94631 0.95537 1.02030 1.70000 1.44676 1.11485 1.31530 0.85859 0.78354 0.79648 0.79976 1.19425 1.20731 1.18289 1.78217 1.12776 1.01765 1.14901 1.75210 1.19448 1.05320 1.13950 1.46139 1.37754 1.05851 1.26199 1.22346 0.92819 1.05291 0.85833 0.93855 0.91937 0.91714 0.89277 0.89839 0.91859 0.90468 0.91668 0.91983 0.90880 0.89046 0.92026 0.90471 0.75355 0.87308 0.84901 0.96083 0.95700 0.92211 0.89324 0.89019 0.86890 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.42 8.85 71.98 0.64 -0.78 16 2 C -0.12 -1.06 4.84 30.59 0.15 -0.91 16 3 C 0.10 1.46 2.07 44.92 0.09 1.55 16 4 H 0.07 1.41 8.04 -2.38 -0.02 1.39 16 5 C -0.19 -2.96 8.59 71.98 0.62 -2.35 16 6 N -0.44 -7.27 3.77 -681.95 -2.57 -9.84 16 7 C 0.04 0.45 4.50 86.30 0.39 0.84 16 8 C -0.16 -1.18 8.93 71.98 0.64 -0.54 16 9 C 0.37 8.78 6.53 260.05 1.70 10.47 16 10 N -0.33 -9.67 9.10 -57.92 -0.53 -10.20 16 11 N -0.29 -9.04 12.21 -50.78 -0.62 -9.66 16 12 C 0.26 7.69 7.94 136.28 1.08 8.78 16 13 C 0.02 0.62 7.07 40.93 0.29 0.91 16 14 C 0.02 0.52 11.54 83.82 0.97 1.49 16 15 N -0.27 -8.84 3.43 -346.68 -1.19 -10.03 16 16 C 0.13 4.21 6.39 86.38 0.55 4.76 16 17 C -0.02 -0.67 4.16 29.85 0.12 -0.55 16 18 C -0.53 -27.60 9.66 25.60 0.25 -27.35 16 19 H 0.06 3.18 7.99 -2.91 -0.02 3.15 16 20 C 0.02 1.09 5.47 84.65 0.46 1.55 16 21 N -0.94 -55.57 13.96 21.44 0.30 -55.27 16 22 Si 0.94 43.20 27.47 68.60 1.88 45.08 16 23 H -0.27 -12.14 7.11 99.48 0.71 -11.44 16 24 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 25 H -0.26 -11.49 6.54 99.48 0.65 -10.83 16 26 N -0.10 -3.50 12.88 37.02 0.48 -3.02 16 27 N -0.27 -9.06 10.91 -49.48 -0.54 -9.60 16 28 N -0.47 -11.51 3.18 -539.91 -1.72 -13.23 16 29 C 0.08 1.44 10.43 127.77 1.33 2.78 16 30 H 0.04 0.50 8.14 -2.39 -0.02 0.48 16 31 H 0.06 0.68 6.32 -2.38 -0.02 0.66 16 32 H 0.06 0.44 8.14 -2.39 -0.02 0.42 16 33 H 0.09 0.59 5.20 -2.39 -0.01 0.58 16 34 H 0.08 0.60 8.14 -2.39 -0.02 0.58 16 35 H 0.06 1.41 5.64 -2.39 -0.01 1.39 16 36 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 37 H 0.06 0.85 5.88 -2.38 -0.01 0.84 16 38 H 0.06 0.89 6.21 -2.38 -0.01 0.87 16 39 H 0.07 0.87 5.27 -2.39 -0.01 0.85 16 40 H 0.09 0.59 3.25 -2.39 -0.01 0.58 16 41 H 0.06 0.47 8.14 -2.38 -0.02 0.45 16 42 H 0.08 0.39 8.14 -2.39 -0.02 0.37 16 43 H 0.23 4.92 8.06 -2.91 -0.02 4.89 16 44 H 0.11 3.39 8.14 -2.38 -0.02 3.37 16 45 H 0.13 3.63 8.06 -2.39 -0.02 3.61 16 46 H 0.02 0.92 7.20 -2.39 -0.02 0.90 16 47 H 0.02 1.11 7.54 -2.38 -0.02 1.09 16 48 H 0.27 14.97 8.31 -92.71 -0.77 14.20 16 49 H 0.09 1.53 8.14 -2.39 -0.02 1.51 16 50 H 0.09 1.91 7.01 -2.38 -0.02 1.89 16 51 H 0.11 1.45 6.21 -2.39 -0.01 1.43 16 Total: -1.00 -68.60 395.96 5.68 -62.92 By element: Atomic # 1 Polarization: 11.29 SS G_CDS: 0.90 Total: 12.19 kcal Atomic # 6 Polarization: -8.64 SS G_CDS: 9.28 Total: 0.65 kcal Atomic # 7 Polarization: -114.46 SS G_CDS: -6.38 Total: -120.84 kcal Atomic # 14 Polarization: 43.20 SS G_CDS: 1.88 Total: 45.08 kcal Total: -68.60 5.68 -62.92 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001262917395.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 243.855 kcal (2) G-P(sol) polarization free energy of solvation -68.605 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 175.250 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.681 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -62.923 kcal (6) G-S(sol) free energy of system = (1) + (5) 180.931 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds