Wall clock time and date at job start Wed Apr 1 2020 05:34:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 N 1.46899 * 109.47179 * 2 1 4 4 C 1.38541 * 110.99909 * 71.29308 * 3 2 1 5 5 N 1.31255 * 126.37484 * 41.36187 * 4 3 2 6 6 N 1.28516 * 110.09335 * 179.81602 * 5 4 3 7 7 C 1.31223 * 109.95886 * 0.46011 * 6 5 4 8 8 C 1.47954 * 126.47508 * 179.69113 * 7 6 5 9 9 C 1.36700 * 126.93114 * 0.03775 * 8 7 6 10 10 N 1.35210 * 106.01805 * 179.97438 * 9 8 7 11 11 C 1.46500 * 125.73118 * 179.97438 * 10 9 8 12 12 C 1.52998 * 109.46980 * 124.99971 * 11 10 9 13 13 C 1.50707 * 109.46813 * 179.97438 * 12 11 10 14 14 H 1.08003 * 119.99915 * 359.97438 * 13 12 11 15 15 C 1.37876 * 119.99824 * 179.97438 * 13 12 11 16 16 N 1.31512 * 119.99813 * 0.02562 * 15 13 12 17 17 Si 1.86797 * 119.99907 * 179.97438 * 15 13 12 18 18 H 1.48506 * 109.46825 * 90.00231 * 17 15 13 19 19 H 1.48495 * 109.47240 * 209.99953 * 17 15 13 20 20 H 1.48498 * 109.47464 * 330.00418 * 17 15 13 21 21 N 1.28645 * 108.53359 * 359.97438 * 10 9 8 22 22 N 1.28603 * 110.54344 * 359.76162 * 21 10 9 23 23 N 1.36601 * 126.37935 * 221.67334 * 4 3 2 24 24 C 1.46494 * 127.17704 * 359.97438 * 23 4 3 25 25 C 1.53004 * 109.47012 * 95.09996 * 24 23 4 26 26 C 1.46899 * 111.00130 * 195.24848 * 3 2 1 27 27 C 1.52995 * 109.47146 * 66.04467 * 26 3 2 28 28 C 1.53006 * 109.46817 * 306.04855 * 26 3 2 29 29 H 1.08994 * 109.47199 * 60.66178 * 1 2 3 30 30 H 1.08999 * 109.47200 * 180.66941 * 1 2 3 31 31 H 1.09003 * 109.46911 * 300.66513 * 1 2 3 32 32 H 1.08994 * 109.46710 * 240.00614 * 2 1 3 33 33 H 1.08998 * 109.46993 * 120.00519 * 2 1 3 34 34 H 1.08006 * 126.99634 * 359.97438 * 9 8 7 35 35 H 1.09006 * 109.46461 * 244.99713 * 11 10 9 36 36 H 1.09004 * 109.47218 * 4.99201 * 11 10 9 37 37 H 1.09003 * 109.46836 * 299.99047 * 12 11 10 38 38 H 1.08998 * 109.47352 * 59.99643 * 12 11 10 39 39 H 0.97006 * 119.99689 * 180.02562 * 16 15 13 40 40 H 1.08998 * 109.47344 * 215.09606 * 24 23 4 41 41 H 1.08996 * 109.47292 * 335.10342 * 24 23 4 42 42 H 1.08998 * 109.47286 * 63.94857 * 25 24 23 43 43 H 1.08997 * 109.47044 * 183.95662 * 25 24 23 44 44 H 1.09008 * 109.47106 * 303.95031 * 25 24 23 45 45 H 1.08999 * 109.47319 * 186.05519 * 26 3 2 46 46 H 1.08995 * 109.47272 * 300.00304 * 27 26 3 47 47 H 1.08996 * 109.46996 * 60.00317 * 27 26 3 48 48 H 1.08998 * 109.46978 * 180.02562 * 27 26 3 49 49 H 1.08995 * 109.47268 * 59.99900 * 28 26 3 50 50 H 1.08998 * 109.46914 * 180.02562 * 28 26 3 51 51 H 1.09004 * 109.46848 * 299.99673 * 28 26 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0197 1.3850 0.0000 4 6 1.7941 1.9913 1.2251 5 7 1.9582 1.4438 2.4066 6 7 1.6618 2.2877 3.3294 7 6 1.2809 3.4230 2.7926 8 6 0.8530 4.6392 3.5182 9 6 0.7770 4.8032 4.8732 10 7 0.3410 6.0675 5.0722 11 6 0.1059 6.6965 6.3743 12 6 0.9086 7.9958 6.4653 13 6 0.6663 8.6431 7.8046 14 1 0.0054 8.1748 8.5190 15 6 1.2882 9.8331 8.1176 16 7 2.0925 10.4035 7.2474 17 14 0.9873 10.6358 9.7773 18 1 1.9896 10.1415 10.7552 19 1 1.1108 12.1096 9.6440 20 1 -0.3777 10.2944 10.2521 21 7 0.1673 6.6253 3.9260 22 7 0.4661 5.8100 2.9775 23 7 1.3538 3.2684 1.4282 24 6 1.0280 4.2655 0.4056 25 6 -0.4750 4.2316 0.1209 26 6 3.4427 1.4403 -0.3607 27 6 3.6185 0.9920 -1.8129 28 6 4.2384 0.5122 0.5594 29 1 -0.3633 0.5035 -0.8958 30 1 -0.3633 -1.0276 0.0120 31 1 -0.3633 0.5241 0.8840 32 1 1.8933 -0.5137 -0.8900 33 1 1.8933 -0.5139 0.8899 34 1 1.0165 4.0717 5.6309 35 1 -0.9559 6.9169 6.4848 36 1 0.4207 6.0184 7.1675 37 1 1.9704 7.7753 6.3549 38 1 0.5938 8.6738 5.6721 39 1 2.5304 11.2406 7.4679 40 1 1.3078 5.2567 0.7625 41 1 1.5762 4.0405 -0.5091 42 1 -1.0213 4.5250 1.0173 43 1 -0.7070 4.9233 -0.6889 44 1 -0.7672 3.2222 -0.1686 45 1 3.8064 2.4617 -0.2490 46 1 3.2548 -0.0294 -1.9245 47 1 3.0516 1.6532 -2.4683 48 1 4.6743 1.0327 -2.0804 49 1 3.8747 -0.5092 0.4478 50 1 5.2943 0.5535 0.2921 51 1 4.1131 0.8315 1.5940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001263057885.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:37 Heat of formation + Delta-G solvation = 160.048528 kcal Electronic energy + Delta-G solvation = -30951.061583 eV Core-core repulsion = 26923.740530 eV Total energy + Delta-G solvation = -4027.321053 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.09 seconds Orbital eigenvalues (eV) -44.43817 -43.93657 -39.74173 -37.00005 -36.55870 -34.85851 -33.92479 -33.18849 -31.86981 -31.78179 -31.00096 -29.13761 -28.07916 -27.45019 -25.49710 -24.80967 -24.41048 -24.10027 -22.82029 -22.27361 -21.39672 -20.58295 -19.00545 -18.38157 -17.82674 -17.67363 -17.32658 -17.16980 -16.61578 -16.45861 -16.13291 -15.54646 -15.47708 -15.19101 -15.11354 -14.76550 -14.35304 -14.22392 -14.08262 -13.66945 -13.44238 -13.38134 -13.22594 -13.06840 -12.91232 -12.83255 -12.74581 -12.71760 -12.59165 -12.44840 -12.35183 -12.23921 -12.18584 -11.92299 -11.90723 -11.66555 -11.63657 -11.47495 -11.35977 -11.14726 -10.93188 -10.62210 -10.03123 -9.44385 -8.25949 -6.39457 0.07514 0.65725 1.02169 1.24828 1.39685 1.44214 1.46806 1.55678 1.99749 2.39698 2.52017 2.74725 3.10062 3.44660 3.63123 3.73825 3.76606 3.94991 3.95307 4.04959 4.12285 4.13670 4.24941 4.26276 4.31386 4.35767 4.37794 4.55161 4.56205 4.58158 4.63878 4.64184 4.72090 4.74578 4.83768 4.87564 5.00515 5.02391 5.04870 5.07157 5.15244 5.25533 5.27860 5.29585 5.37508 5.43523 5.48423 5.51422 5.74371 5.75029 6.04372 6.15567 6.76886 7.29848 7.31974 7.52299 8.86471 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022319 B = 0.002037 C = 0.002015 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1254.229121 B =13740.699308 C =13893.074650 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.142 4.142 2 C 0.055 3.945 3 N -0.452 5.452 4 C 0.366 3.634 5 N -0.328 5.328 6 N -0.290 5.290 7 C 0.263 3.737 8 C 0.017 3.983 9 C 0.015 3.985 10 N -0.271 5.271 11 C 0.123 3.877 12 C 0.022 3.978 13 C -0.541 4.541 14 H 0.082 0.918 15 C 0.001 3.999 16 N -0.933 5.933 17 Si 0.972 3.028 18 H -0.272 1.272 19 H -0.289 1.289 20 H -0.256 1.256 21 N -0.098 5.098 22 N -0.269 5.269 23 N -0.452 5.452 24 C 0.108 3.892 25 C -0.149 4.149 26 C 0.081 3.919 27 C -0.134 4.134 28 C -0.181 4.181 29 H 0.069 0.931 30 H 0.080 0.920 31 H 0.020 0.980 32 H 0.118 0.882 33 H 0.049 0.951 34 H 0.230 0.770 35 H 0.110 0.890 36 H 0.133 0.867 37 H -0.007 1.007 38 H 0.002 0.998 39 H 0.264 0.736 40 H 0.091 0.909 41 H 0.118 0.882 42 H 0.040 0.960 43 H 0.100 0.900 44 H 0.062 0.938 45 H 0.069 0.931 46 H 0.072 0.928 47 H 0.069 0.931 48 H 0.078 0.922 49 H 0.072 0.928 50 H 0.076 0.924 51 H 0.037 0.963 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -0.862 -22.007 -18.508 28.768 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.200 4.200 2 C -0.070 4.070 3 N -0.179 5.179 4 C 0.009 3.991 5 N -0.174 5.174 6 N -0.134 5.134 7 C -0.004 4.004 8 C -0.123 4.123 9 C -0.140 4.140 10 N -0.062 5.062 11 C 0.004 3.996 12 C -0.016 4.016 13 C -0.579 4.579 14 H 0.100 0.900 15 C -0.198 4.198 16 N -0.572 5.572 17 Si 0.796 3.204 18 H -0.198 1.198 19 H -0.215 1.215 20 H -0.180 1.180 21 N -0.078 5.078 22 N -0.137 5.137 23 N -0.144 5.144 24 C -0.013 4.013 25 C -0.207 4.207 26 C -0.026 4.026 27 C -0.191 4.191 28 C -0.240 4.240 29 H 0.088 0.912 30 H 0.099 0.901 31 H 0.039 0.961 32 H 0.136 0.864 33 H 0.067 0.933 34 H 0.246 0.754 35 H 0.128 0.872 36 H 0.151 0.849 37 H 0.011 0.989 38 H 0.020 0.980 39 H 0.073 0.927 40 H 0.109 0.891 41 H 0.137 0.863 42 H 0.060 0.940 43 H 0.118 0.882 44 H 0.081 0.919 45 H 0.088 0.912 46 H 0.091 0.909 47 H 0.088 0.912 48 H 0.097 0.903 49 H 0.091 0.909 50 H 0.095 0.905 51 H 0.056 0.944 Dipole moment (debyes) X Y Z Total from point charges -1.151 -21.279 -18.619 28.298 hybrid contribution 0.545 0.735 1.217 1.523 sum -0.605 -20.544 -17.402 26.930 Atomic orbital electron populations 1.21733 0.94562 1.02591 1.01096 1.22323 0.96152 0.85179 1.03395 1.59261 1.19411 1.19841 1.19361 1.22523 1.00163 0.83759 0.92624 1.74487 1.21937 1.24644 0.96288 1.74255 1.16671 0.97792 1.24653 1.20886 1.05022 0.94054 0.80475 1.18598 1.10941 0.91959 0.90825 1.24027 1.02984 0.88852 0.98183 1.47833 1.39827 1.09382 1.09198 1.22691 1.03479 0.96724 0.76679 1.19173 0.93973 0.91155 0.97298 1.21447 1.28469 1.07164 1.00836 0.90013 1.26011 0.94556 0.97897 1.01309 1.70129 1.30745 1.19053 1.37281 0.85340 0.79369 0.77034 0.78665 1.19764 1.21462 1.17972 1.78252 1.20579 1.21442 0.87515 1.75220 1.15335 0.99410 1.23722 1.46537 1.48140 1.12865 1.06832 1.22102 0.99013 0.90286 0.89893 1.21948 0.93040 1.03163 1.02549 1.21918 0.83131 0.99950 0.97636 1.21832 1.03071 1.02426 0.91806 1.22453 1.01526 1.00766 0.99237 0.91214 0.90067 0.96066 0.86367 0.93263 0.75393 0.87226 0.84878 0.98858 0.97967 0.92697 0.89101 0.86340 0.94049 0.88185 0.91874 0.91232 0.90866 0.91241 0.90308 0.90887 0.90529 0.94362 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -2.16 9.97 71.98 0.72 -1.44 16 2 C 0.06 0.82 4.36 86.30 0.38 1.20 16 3 N -0.45 -8.04 4.44 -681.96 -3.03 -11.06 16 4 C 0.37 9.21 5.24 260.04 1.36 10.57 16 5 N -0.33 -9.96 10.17 -57.92 -0.59 -10.55 16 6 N -0.29 -9.66 12.21 -50.77 -0.62 -10.28 16 7 C 0.26 8.41 7.94 136.28 1.08 9.49 16 8 C 0.02 0.56 7.07 40.93 0.29 0.85 16 9 C 0.02 0.47 11.54 83.81 0.97 1.44 16 10 N -0.27 -9.70 3.43 -346.68 -1.19 -10.89 16 11 C 0.12 4.33 6.39 86.38 0.55 4.88 16 12 C 0.02 1.08 5.10 29.85 0.15 1.23 16 13 C -0.54 -27.85 9.11 25.60 0.23 -27.62 16 14 H 0.08 3.80 7.74 -2.91 -0.02 3.77 16 15 C 0.00 0.05 5.46 84.65 0.46 0.51 16 16 N -0.93 -55.31 13.29 21.45 0.28 -55.03 16 17 Si 0.97 41.81 29.54 68.60 2.03 43.83 16 18 H -0.27 -11.34 7.11 99.48 0.71 -10.64 16 19 H -0.29 -12.50 7.11 99.48 0.71 -11.79 16 20 H -0.26 -10.26 7.11 99.48 0.71 -9.56 16 21 N -0.10 -3.94 12.87 37.02 0.48 -3.46 16 22 N -0.27 -9.87 10.90 -49.49 -0.54 -10.41 16 23 N -0.45 -12.15 2.83 -516.57 -1.46 -13.61 16 24 C 0.11 2.35 6.44 86.38 0.56 2.91 16 25 C -0.15 -2.94 10.24 71.98 0.74 -2.21 16 26 C 0.08 1.19 2.89 44.92 0.13 1.32 16 27 C -0.13 -1.11 9.15 71.98 0.66 -0.45 16 28 C -0.18 -2.90 8.46 71.98 0.61 -2.30 16 29 H 0.07 0.94 8.14 -2.39 -0.02 0.92 16 30 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 31 H 0.02 0.45 7.55 -2.39 -0.02 0.43 16 32 H 0.12 1.06 5.95 -2.39 -0.01 1.05 16 33 H 0.05 0.90 6.55 -2.39 -0.02 0.89 16 34 H 0.23 5.46 8.06 -2.91 -0.02 5.44 16 35 H 0.11 3.55 8.14 -2.38 -0.02 3.53 16 36 H 0.13 3.81 8.06 -2.39 -0.02 3.79 16 37 H -0.01 -0.38 8.14 -2.39 -0.02 -0.40 16 38 H 0.00 0.11 8.11 -2.39 -0.02 0.09 16 39 H 0.26 14.82 8.31 -92.70 -0.77 14.05 16 40 H 0.09 2.29 6.98 -2.39 -0.02 2.27 16 41 H 0.12 1.97 8.11 -2.39 -0.02 1.95 16 42 H 0.04 1.03 8.14 -2.39 -0.02 1.02 16 43 H 0.10 1.51 8.14 -2.39 -0.02 1.49 16 44 H 0.06 1.19 8.14 -2.38 -0.02 1.17 16 45 H 0.07 1.21 8.05 -2.39 -0.02 1.19 16 46 H 0.07 0.45 6.29 -2.39 -0.02 0.43 16 47 H 0.07 0.56 8.14 -2.39 -0.02 0.54 16 48 H 0.08 0.50 8.14 -2.39 -0.02 0.48 16 49 H 0.07 1.01 6.67 -2.39 -0.02 1.00 16 50 H 0.08 1.00 8.14 -2.39 -0.02 0.98 16 51 H 0.04 0.88 6.59 -2.39 -0.02 0.86 16 Total: -1.00 -70.38 414.83 5.17 -65.21 By element: Atomic # 1 Polarization: 14.94 SS G_CDS: 0.92 Total: 15.86 kcal Atomic # 6 Polarization: -8.48 SS G_CDS: 8.89 Total: 0.40 kcal Atomic # 7 Polarization: -118.63 SS G_CDS: -6.67 Total: -125.30 kcal Atomic # 14 Polarization: 41.81 SS G_CDS: 2.03 Total: 43.83 kcal Total: -70.38 5.17 -65.21 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001263057885.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.259 kcal (2) G-P(sol) polarization free energy of solvation -70.376 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 154.883 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -65.211 kcal (6) G-S(sol) free energy of system = (1) + (5) 160.049 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.09 seconds