Wall clock time and date at job start Wed Apr 1 2020 04:43:04 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99897 * 2 1 4 4 C 1.52998 * 109.47082 * 125.00002 * 3 2 1 5 5 N 1.46496 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.60060 * 125.00057 * 5 4 3 7 7 C 1.36595 * 106.84124 * 180.02562 * 6 5 4 8 8 C 1.47532 * 125.76895 * 179.97438 * 7 6 5 9 9 O 1.21596 * 119.99852 * 352.74351 * 8 7 6 10 10 N 1.34775 * 120.00030 * 172.74301 * 8 7 6 11 11 C 1.46935 * 120.62660 * 352.63641 * 10 8 7 12 12 C 1.53193 * 108.76884 * 233.60584 * 11 10 8 13 13 C 1.53037 * 109.31775 * 305.36682 * 12 11 10 14 14 C 1.53044 * 109.53519 * 61.36575 * 13 12 11 15 15 H 1.08999 * 109.49369 * 58.62045 * 14 13 12 16 16 C 1.53003 * 109.49219 * 178.68250 * 14 13 12 17 17 N 1.46500 * 109.46699 * 184.93448 * 16 14 13 18 18 C 1.46500 * 120.00544 * 270.00403 * 17 16 14 19 19 C 1.36940 * 119.99746 * 90.00105 * 17 16 14 20 20 H 1.08001 * 120.00119 * 332.68559 * 19 17 16 21 21 C 1.38814 * 119.99652 * 152.95833 * 19 17 16 22 22 N 1.31618 * 120.00014 * 347.18221 * 21 19 17 23 23 Si 1.86804 * 119.99612 * 167.18565 * 21 19 17 24 24 H 1.48495 * 109.47346 * 60.00016 * 23 21 19 25 25 H 1.48509 * 109.47033 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47310 * 299.99435 * 23 21 19 27 27 C 1.46926 * 120.60750 * 172.65792 * 10 8 7 28 28 N 1.34398 * 108.46060 * 0.23917 * 7 6 5 29 29 N 1.28764 * 109.52032 * 359.58890 * 28 7 6 30 30 H 1.08000 * 120.00132 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99518 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99518 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47394 * 4.99439 * 3 2 1 34 34 H 1.09001 * 109.47038 * 244.99711 * 3 2 1 35 35 H 1.08996 * 109.47466 * 59.99480 * 4 3 2 36 36 H 1.09001 * 109.46946 * 299.99765 * 4 3 2 37 37 H 1.07998 * 126.57807 * 0.04764 * 6 5 4 38 38 H 1.09000 * 109.58574 * 113.82764 * 11 10 8 39 39 H 1.08993 * 109.70382 * 353.46421 * 11 10 8 40 40 H 1.09003 * 109.49352 * 185.41194 * 12 11 10 41 41 H 1.09006 * 109.49695 * 65.32600 * 12 11 10 42 42 H 1.08996 * 109.46030 * 301.34589 * 13 12 11 43 43 H 1.09004 * 109.45843 * 181.38680 * 13 12 11 44 44 H 1.09001 * 109.47015 * 64.94072 * 16 14 13 45 45 H 1.09003 * 109.47418 * 304.93251 * 16 14 13 46 46 H 1.09002 * 109.46690 * 269.17353 * 18 17 16 47 47 H 1.09003 * 109.46779 * 29.16576 * 18 17 16 48 48 H 1.08991 * 109.47607 * 149.17104 * 18 17 16 49 49 H 0.97004 * 119.99513 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.61269 * 6.62034 * 27 10 8 51 51 H 1.09007 * 109.56180 * 246.19528 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7671 2.6020 1.1820 6 6 3.8481 3.4829 2.1993 7 6 4.6268 4.5179 1.7655 8 6 4.9866 5.7143 2.5502 9 8 4.4761 5.9044 3.6374 10 7 5.8811 6.5965 2.0622 11 6 6.6253 6.3035 0.8296 12 6 8.1236 6.4549 1.1108 13 6 8.3917 7.8452 1.6917 14 6 7.6342 8.0029 3.0121 15 1 7.9538 7.2287 3.7095 16 6 7.9290 9.3808 3.6083 17 7 7.2995 9.4870 4.9269 18 6 5.9320 9.9988 5.0468 19 6 7.9894 9.1079 6.0475 20 1 8.7625 8.3571 5.9774 21 6 7.6910 9.6846 7.2744 22 7 6.9359 10.7613 7.3293 23 14 8.3614 8.9327 8.8475 24 1 9.8456 8.9323 8.8027 25 1 7.9020 9.7308 10.0126 26 1 7.8698 7.5376 8.9779 27 6 6.1304 7.8689 2.7533 28 7 5.0050 4.2650 0.5008 29 7 4.5178 3.1342 0.1241 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4026 -0.9314 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2356 2.1130 37 1 3.3863 3.3883 3.1709 38 1 6.3278 7.0028 0.0482 39 1 6.4152 5.2839 0.5070 40 1 8.6819 6.3347 0.1823 41 1 8.4382 5.6949 1.8260 42 1 8.0543 8.6047 0.9864 43 1 9.4605 7.9644 1.8696 44 1 7.5297 10.1538 2.9518 45 1 9.0067 9.5103 3.7087 46 1 5.9596 11.0791 5.1890 47 1 5.3761 9.7660 4.1386 48 1 5.4431 9.5321 5.9018 49 1 6.7277 11.1644 8.1866 50 1 5.5938 7.8812 3.7020 51 1 5.7918 8.6958 2.1288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266468870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:04 Heat of formation + Delta-G solvation = 112.256745 kcal Electronic energy + Delta-G solvation = -30736.309270 eV Core-core repulsion = 26674.623059 eV Total energy + Delta-G solvation = -4061.686211 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.45740 -39.69592 -37.42285 -36.86705 -35.39759 -34.20330 -32.84600 -31.58862 -31.20903 -30.13652 -29.52382 -26.44494 -25.43829 -25.39673 -24.97259 -22.97450 -22.39834 -21.98998 -20.81502 -20.46544 -19.87807 -19.13604 -17.52292 -16.62516 -16.52619 -16.33037 -16.06232 -15.64871 -15.05376 -14.92980 -14.80832 -14.53643 -14.18586 -13.94115 -13.64958 -13.54765 -13.35825 -13.16732 -13.13106 -12.72171 -12.43897 -12.34407 -12.27657 -12.06062 -11.74169 -11.72339 -11.30850 -11.10655 -10.81606 -10.76184 -10.68861 -10.55684 -10.51421 -10.23951 -10.08977 -9.99299 -9.84578 -9.80565 -9.73073 -9.61096 -9.43458 -8.41974 -8.26761 -6.54449 -5.61740 -3.10207 0.91712 1.54336 1.61103 1.82576 3.16512 3.37997 3.46342 3.51137 3.53311 3.90029 4.02366 4.14211 4.34264 4.52701 4.59501 4.59830 4.66084 4.77374 4.93326 5.05596 5.15970 5.20822 5.29372 5.31685 5.36032 5.42035 5.52684 5.54704 5.64619 5.84349 5.91213 5.98938 6.04947 6.08409 6.12261 6.14599 6.25625 6.27183 6.36377 6.39353 6.54847 6.65275 6.85249 6.89876 6.97392 7.09823 7.48437 7.60010 7.78270 7.82130 7.92159 8.35440 8.55068 9.36021 9.99466 10.50738 11.43453 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.002291 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.666067 B =12218.744071 C =13319.951176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.106 4.106 4 C 0.126 3.874 5 N -0.362 5.362 6 C 0.092 3.908 7 C -0.090 4.090 8 C 0.596 3.404 9 O -0.533 6.533 10 N -0.593 5.593 11 C 0.087 3.913 12 C -0.132 4.132 13 C -0.114 4.114 14 C -0.121 4.121 15 H 0.072 0.928 16 C 0.159 3.841 17 N -0.599 5.599 18 C 0.160 3.840 19 C -0.252 4.252 20 H 0.063 0.937 21 C 0.004 3.996 22 N -0.906 5.906 23 Si 0.902 3.098 24 H -0.284 1.284 25 H -0.291 1.291 26 H -0.284 1.284 27 C 0.122 3.878 28 N -0.204 5.204 29 N -0.070 5.070 30 H 0.102 0.898 31 H 0.098 0.902 32 H 0.115 0.885 33 H 0.076 0.924 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.205 0.795 38 H 0.063 0.937 39 H 0.121 0.879 40 H 0.069 0.931 41 H 0.061 0.939 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.035 0.965 45 H 0.050 0.950 46 H 0.024 0.976 47 H 0.000 1.000 48 H 0.042 0.958 49 H 0.252 0.748 50 H 0.105 0.895 51 H 0.060 0.940 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.263 -20.474 -17.756 28.640 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.216 4.216 2 C -0.178 4.178 3 C -0.144 4.144 4 C 0.005 3.995 5 N -0.147 5.147 6 C -0.064 4.064 7 C -0.229 4.229 8 C 0.381 3.619 9 O -0.409 6.409 10 N -0.325 5.325 11 C -0.037 4.037 12 C -0.170 4.170 13 C -0.153 4.153 14 C -0.143 4.143 15 H 0.091 0.909 16 C 0.031 3.969 17 N -0.321 5.321 18 C 0.015 3.985 19 C -0.382 4.382 20 H 0.081 0.919 21 C -0.195 4.195 22 N -0.551 5.551 23 Si 0.732 3.268 24 H -0.210 1.210 25 H -0.217 1.217 26 H -0.211 1.211 27 C 0.001 3.999 28 N -0.077 5.077 29 N -0.050 5.050 30 H 0.120 0.880 31 H 0.117 0.883 32 H 0.133 0.867 33 H 0.095 0.905 34 H 0.110 0.890 35 H 0.119 0.881 36 H 0.125 0.875 37 H 0.222 0.778 38 H 0.082 0.918 39 H 0.138 0.862 40 H 0.087 0.913 41 H 0.080 0.920 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.053 0.947 45 H 0.069 0.931 46 H 0.042 0.958 47 H 0.019 0.981 48 H 0.061 0.939 49 H 0.062 0.938 50 H 0.123 0.877 51 H 0.078 0.922 Dipole moment (debyes) X Y Z Total from point charges -9.167 -20.490 -18.434 29.046 hybrid contribution -0.036 -0.406 1.881 1.925 sum -9.203 -20.895 -16.553 28.201 Atomic orbital electron populations 1.23979 0.95899 1.02353 0.99381 1.22737 0.96017 0.97627 1.01445 1.21026 0.98016 0.96806 0.98576 1.22033 0.94469 0.81375 1.01598 1.50491 1.35890 1.17403 1.10911 1.23412 0.98322 0.89290 0.95384 1.21614 1.07779 1.00362 0.93154 1.16837 0.79804 0.80893 0.84367 1.90852 1.54693 1.75404 1.19927 1.47999 1.39087 1.19053 1.26313 1.22422 0.91057 1.04612 0.85583 1.21908 0.95764 0.98403 1.00951 1.21566 1.00387 0.96032 0.97274 1.22250 0.93684 1.02518 0.95847 0.90922 1.20725 0.96984 0.91896 0.87325 1.43816 1.11606 1.75594 1.01097 1.20827 0.84060 0.97778 0.95837 1.19057 1.17096 1.15927 0.86082 0.91928 1.25076 0.99991 0.95993 0.98416 1.70041 1.41126 1.19851 1.24033 0.86387 0.78572 0.78628 0.83246 1.21009 1.21719 1.21100 1.21907 0.97507 0.82261 0.98219 1.74447 1.15216 1.07489 1.10567 1.81952 1.09103 1.05343 1.08561 0.87984 0.88349 0.86697 0.90519 0.89039 0.88137 0.87497 0.77820 0.91843 0.86209 0.91286 0.92003 0.92227 0.91948 0.94653 0.93148 0.95789 0.98118 0.93898 0.93812 0.87651 0.92218 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.70 14.32 29.01 0.42 -0.28 16 2 C -0.16 -0.60 9.52 -36.03 -0.34 -0.95 16 3 C -0.11 -0.50 5.86 -27.89 -0.16 -0.66 16 4 C 0.13 0.58 6.52 -4.04 -0.03 0.55 16 5 N -0.36 -3.18 3.69 -61.07 -0.23 -3.40 16 6 C 0.09 0.95 11.28 -16.84 -0.19 0.76 16 7 C -0.09 -1.23 6.69 -83.55 -0.56 -1.79 16 8 C 0.60 10.13 7.67 -12.47 -0.10 10.04 16 9 O -0.53 -10.79 16.30 5.28 0.09 -10.70 16 10 N -0.59 -9.70 2.97 -173.99 -0.52 -10.22 16 11 C 0.09 1.17 6.07 -3.71 -0.02 1.14 16 12 C -0.13 -1.69 6.08 -26.61 -0.16 -1.85 16 13 C -0.11 -1.63 5.17 -26.69 -0.14 -1.76 16 14 C -0.12 -2.19 2.54 -90.50 -0.23 -2.42 16 15 H 0.07 1.51 8.14 -51.93 -0.42 1.09 16 16 C 0.16 3.31 5.16 -4.04 -0.02 3.29 16 17 N -0.60 -15.42 2.75 -181.12 -0.50 -15.92 16 18 C 0.16 4.08 8.10 59.85 0.48 4.56 16 19 C -0.25 -7.14 9.61 -15.06 -0.14 -7.28 16 20 H 0.06 1.75 7.86 -52.49 -0.41 1.34 16 21 C 0.00 0.11 5.06 -17.43 -0.09 0.02 16 22 N -0.91 -27.32 10.99 55.49 0.61 -26.71 16 23 Si 0.90 22.68 29.57 -169.99 -5.03 17.65 16 24 H -0.28 -6.99 7.11 56.52 0.40 -6.59 16 25 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 26 H -0.28 -7.15 7.11 56.52 0.40 -6.75 16 27 C 0.12 2.22 4.45 -3.72 -0.02 2.20 16 28 N -0.20 -2.69 8.81 32.85 0.29 -2.40 16 29 N -0.07 -0.81 13.65 60.35 0.82 0.01 16 30 H 0.10 0.31 8.06 -52.49 -0.42 -0.12 16 31 H 0.10 0.39 7.84 -52.48 -0.41 -0.02 16 32 H 0.12 0.31 8.06 -52.48 -0.42 -0.12 16 33 H 0.08 0.42 7.79 -51.93 -0.40 0.01 16 34 H 0.09 0.52 8.14 -51.93 -0.42 0.10 16 35 H 0.10 0.34 8.14 -51.93 -0.42 -0.08 16 36 H 0.11 0.27 8.08 -51.93 -0.42 -0.15 16 37 H 0.21 1.57 8.06 -52.49 -0.42 1.14 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.37 16 39 H 0.12 1.60 4.15 -74.74 -0.31 1.29 16 40 H 0.07 0.73 8.14 -51.93 -0.42 0.31 16 41 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 42 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 43 H 0.06 0.86 8.14 -51.93 -0.42 0.43 16 44 H 0.04 0.69 8.07 -51.93 -0.42 0.27 16 45 H 0.05 1.06 8.04 -51.93 -0.42 0.64 16 46 H 0.02 0.65 7.51 -51.93 -0.39 0.26 16 47 H 0.00 0.01 6.09 -51.93 -0.32 -0.31 16 48 H 0.04 1.19 7.32 -51.93 -0.38 0.81 16 49 H 0.25 7.37 8.31 -40.82 -0.34 7.03 16 50 H 0.11 2.29 5.27 -51.93 -0.27 2.02 16 51 H 0.06 1.02 8.11 -51.92 -0.42 0.60 16 LS Contribution 407.91 15.07 6.15 6.15 Total: -1.00 -34.56 407.91 -7.97 -42.53 By element: Atomic # 1 Polarization: 5.81 SS G_CDS: -8.36 Total: -2.55 kcal Atomic # 6 Polarization: 6.86 SS G_CDS: -1.30 Total: 5.56 kcal Atomic # 7 Polarization: -59.13 SS G_CDS: 0.48 Total: -58.65 kcal Atomic # 8 Polarization: -10.79 SS G_CDS: 0.09 Total: -10.70 kcal Atomic # 14 Polarization: 22.68 SS G_CDS: -5.03 Total: 17.65 kcal Total LS contribution 6.15 Total: 6.15 kcal Total: -34.56 -7.97 -42.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266468870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 154.788 kcal (2) G-P(sol) polarization free energy of solvation -34.557 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 120.231 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.974 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 112.257 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds