Wall clock time and date at job start Wed Apr 1 2020 04:43:02 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31007 * 1 3 3 C 1.50697 * 119.99897 * 2 1 4 4 C 1.52998 * 109.47082 * 125.00002 * 3 2 1 5 5 N 1.46496 * 109.47215 * 180.02562 * 4 3 2 6 6 C 1.34813 * 126.60060 * 125.00057 * 5 4 3 7 7 C 1.36595 * 106.84124 * 180.02562 * 6 5 4 8 8 C 1.47532 * 125.76895 * 179.97438 * 7 6 5 9 9 O 1.21596 * 119.99852 * 352.74351 * 8 7 6 10 10 N 1.34775 * 120.00030 * 172.74301 * 8 7 6 11 11 C 1.46935 * 120.62660 * 352.63641 * 10 8 7 12 12 C 1.53193 * 108.76884 * 233.60584 * 11 10 8 13 13 C 1.53037 * 109.31775 * 305.36682 * 12 11 10 14 14 C 1.53044 * 109.53519 * 61.36575 * 13 12 11 15 15 H 1.08999 * 109.49369 * 58.62045 * 14 13 12 16 16 C 1.53003 * 109.49219 * 178.68250 * 14 13 12 17 17 N 1.46500 * 109.46699 * 184.93448 * 16 14 13 18 18 C 1.46500 * 120.00544 * 270.00403 * 17 16 14 19 19 C 1.36940 * 119.99746 * 90.00105 * 17 16 14 20 20 H 1.08001 * 120.00119 * 332.68559 * 19 17 16 21 21 C 1.38814 * 119.99652 * 152.95833 * 19 17 16 22 22 N 1.31618 * 120.00014 * 347.18221 * 21 19 17 23 23 Si 1.86804 * 119.99612 * 167.18565 * 21 19 17 24 24 H 1.48495 * 109.47346 * 60.00016 * 23 21 19 25 25 H 1.48509 * 109.47033 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47310 * 299.99435 * 23 21 19 27 27 C 1.46926 * 120.60750 * 172.65792 * 10 8 7 28 28 N 1.34398 * 108.46060 * 0.23917 * 7 6 5 29 29 N 1.28764 * 109.52032 * 359.58890 * 28 7 6 30 30 H 1.08000 * 120.00132 * 179.97438 * 1 2 3 31 31 H 1.08003 * 119.99518 * 0.02562 * 1 2 3 32 32 H 1.08003 * 119.99518 * 179.97438 * 2 1 3 33 33 H 1.08996 * 109.47394 * 4.99439 * 3 2 1 34 34 H 1.09001 * 109.47038 * 244.99711 * 3 2 1 35 35 H 1.08996 * 109.47466 * 59.99480 * 4 3 2 36 36 H 1.09001 * 109.46946 * 299.99765 * 4 3 2 37 37 H 1.07998 * 126.57807 * 0.04764 * 6 5 4 38 38 H 1.09000 * 109.58574 * 113.82764 * 11 10 8 39 39 H 1.08993 * 109.70382 * 353.46421 * 11 10 8 40 40 H 1.09003 * 109.49352 * 185.41194 * 12 11 10 41 41 H 1.09006 * 109.49695 * 65.32600 * 12 11 10 42 42 H 1.08996 * 109.46030 * 301.34589 * 13 12 11 43 43 H 1.09004 * 109.45843 * 181.38680 * 13 12 11 44 44 H 1.09001 * 109.47015 * 64.94072 * 16 14 13 45 45 H 1.09003 * 109.47418 * 304.93251 * 16 14 13 46 46 H 1.09002 * 109.46690 * 269.17353 * 18 17 16 47 47 H 1.09003 * 109.46779 * 29.16576 * 18 17 16 48 48 H 1.08991 * 109.47607 * 149.17104 * 18 17 16 49 49 H 0.97004 * 119.99513 * 180.02562 * 22 21 19 50 50 H 1.09004 * 109.61269 * 6.62034 * 27 10 8 51 51 H 1.09007 * 109.56180 * 246.19528 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3101 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0351 1.3331 1.1816 5 7 3.7671 2.6020 1.1820 6 6 3.8481 3.4829 2.1993 7 6 4.6268 4.5179 1.7655 8 6 4.9866 5.7143 2.5502 9 8 4.4761 5.9044 3.6374 10 7 5.8811 6.5965 2.0622 11 6 6.6253 6.3035 0.8296 12 6 8.1236 6.4549 1.1108 13 6 8.3917 7.8452 1.6917 14 6 7.6342 8.0029 3.0121 15 1 7.9538 7.2287 3.7095 16 6 7.9290 9.3808 3.6083 17 7 7.2995 9.4870 4.9269 18 6 5.9320 9.9988 5.0468 19 6 7.9894 9.1079 6.0475 20 1 8.7625 8.3571 5.9774 21 6 7.6910 9.6846 7.2744 22 7 6.9359 10.7613 7.3293 23 14 8.3614 8.9327 8.8475 24 1 9.8456 8.9323 8.8027 25 1 7.9020 9.7308 10.0126 26 1 7.8698 7.5376 8.9779 27 6 6.1304 7.8689 2.7533 28 7 5.0050 4.2650 0.5008 29 7 4.5178 3.1342 0.1241 30 1 -0.5400 -0.9353 -0.0004 31 1 -0.5399 0.9354 -0.0004 32 1 1.8500 -0.9354 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6214 1.4026 -0.9314 35 1 3.7399 0.5066 1.0921 36 1 2.4772 1.2356 2.1130 37 1 3.3863 3.3883 3.1709 38 1 6.3278 7.0028 0.0482 39 1 6.4152 5.2839 0.5070 40 1 8.6819 6.3347 0.1823 41 1 8.4382 5.6949 1.8260 42 1 8.0543 8.6047 0.9864 43 1 9.4605 7.9644 1.8696 44 1 7.5297 10.1538 2.9518 45 1 9.0067 9.5103 3.7087 46 1 5.9596 11.0791 5.1890 47 1 5.3761 9.7660 4.1386 48 1 5.4431 9.5321 5.9018 49 1 6.7277 11.1644 8.1866 50 1 5.5938 7.8812 3.7020 51 1 5.7918 8.6958 2.1288 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266468870.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:02 Heat of formation + Delta-G solvation = 91.046878 kcal Electronic energy + Delta-G solvation = -30737.228999 eV Core-core repulsion = 26674.623059 eV Total energy + Delta-G solvation = -4062.605940 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.21 seconds Orbital eigenvalues (eV) -43.34156 -40.98434 -38.85875 -37.38661 -37.14084 -34.93111 -34.29731 -33.17481 -32.19887 -31.57627 -30.30909 -28.26089 -27.31320 -26.64622 -25.63195 -24.16799 -23.75697 -22.82040 -22.33278 -21.30598 -20.76157 -20.30457 -18.67060 -18.44570 -17.54300 -17.22295 -17.09451 -16.86332 -16.27091 -16.11744 -15.82688 -15.73988 -15.51245 -15.14061 -14.99875 -14.84801 -14.72453 -14.10985 -14.03777 -13.92330 -13.85901 -13.67245 -13.29958 -13.09322 -12.96724 -12.77754 -12.68514 -12.52897 -12.42541 -12.23840 -12.06106 -12.02593 -11.94177 -11.83235 -11.55887 -11.45629 -11.32824 -11.27294 -10.88396 -10.56925 -10.42186 -10.27446 -9.57870 -8.66164 -7.81140 -5.32267 0.09808 0.55668 0.99667 1.40422 1.43447 1.47377 1.53335 1.95981 2.18138 2.51482 3.07886 3.30661 3.31902 3.65484 3.72279 3.78663 3.91791 3.97182 4.01493 4.04480 4.16011 4.18058 4.21315 4.35028 4.38186 4.41285 4.41971 4.62772 4.74918 4.78663 4.82156 4.89172 4.91948 4.93383 4.96758 5.06256 5.08337 5.15208 5.17122 5.24638 5.36138 5.40551 5.44585 5.59222 5.65229 5.65605 5.68309 5.72399 5.82574 6.36666 6.38677 6.81556 7.10004 7.17963 7.90461 8.36132 9.21862 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.014682 B = 0.002291 C = 0.002102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1906.666067 B =12218.744071 C =13319.951176 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.186 4.186 2 C -0.158 4.158 3 C -0.101 4.101 4 C 0.117 3.883 5 N -0.345 5.345 6 C 0.108 3.892 7 C -0.118 4.118 8 C 0.591 3.409 9 O -0.578 6.578 10 N -0.596 5.596 11 C 0.086 3.914 12 C -0.125 4.125 13 C -0.107 4.107 14 C -0.107 4.107 15 H 0.039 0.961 16 C 0.157 3.843 17 N -0.615 5.615 18 C 0.179 3.821 19 C -0.259 4.259 20 H 0.062 0.938 21 C -0.053 4.053 22 N -0.937 5.937 23 Si 0.965 3.035 24 H -0.272 1.272 25 H -0.292 1.292 26 H -0.284 1.284 27 C 0.128 3.872 28 N -0.215 5.215 29 N -0.079 5.079 30 H 0.111 0.889 31 H 0.094 0.906 32 H 0.130 0.870 33 H 0.067 0.933 34 H 0.080 0.920 35 H 0.120 0.880 36 H 0.135 0.865 37 H 0.230 0.770 38 H 0.079 0.921 39 H 0.126 0.874 40 H 0.102 0.898 41 H 0.048 0.952 42 H 0.078 0.922 43 H 0.071 0.929 44 H 0.053 0.947 45 H 0.048 0.952 46 H 0.001 0.999 47 H 0.030 0.970 48 H 0.008 0.992 49 H 0.248 0.752 50 H 0.064 0.936 51 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.904 -22.760 -19.550 31.297 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.223 4.223 2 C -0.177 4.177 3 C -0.139 4.139 4 C -0.001 4.001 5 N -0.130 5.130 6 C -0.049 4.049 7 C -0.257 4.257 8 C 0.378 3.622 9 O -0.458 6.458 10 N -0.326 5.326 11 C -0.036 4.036 12 C -0.163 4.163 13 C -0.145 4.145 14 C -0.128 4.128 15 H 0.058 0.942 16 C 0.030 3.970 17 N -0.338 5.338 18 C 0.034 3.966 19 C -0.390 4.390 20 H 0.080 0.920 21 C -0.248 4.248 22 N -0.583 5.583 23 Si 0.793 3.207 24 H -0.197 1.197 25 H -0.218 1.218 26 H -0.211 1.211 27 C 0.006 3.994 28 N -0.088 5.088 29 N -0.059 5.059 30 H 0.130 0.870 31 H 0.112 0.888 32 H 0.148 0.852 33 H 0.085 0.915 34 H 0.099 0.901 35 H 0.138 0.862 36 H 0.153 0.847 37 H 0.246 0.754 38 H 0.097 0.903 39 H 0.143 0.857 40 H 0.121 0.879 41 H 0.067 0.933 42 H 0.097 0.903 43 H 0.089 0.911 44 H 0.071 0.929 45 H 0.067 0.933 46 H 0.020 0.980 47 H 0.048 0.952 48 H 0.027 0.973 49 H 0.057 0.943 50 H 0.083 0.917 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -8.780 -22.819 -20.306 31.783 hybrid contribution -0.219 0.195 2.335 2.354 sum -8.999 -22.624 -17.970 30.262 Atomic orbital electron populations 1.24105 0.96156 1.02689 0.99368 1.22770 0.95930 0.97582 1.01373 1.20951 0.97734 0.97153 0.98112 1.22510 0.94843 0.79863 1.02932 1.50750 1.34709 1.17939 1.09603 1.23746 0.96701 0.88244 0.96251 1.21272 1.10259 1.00421 0.93729 1.17283 0.79213 0.81645 0.84082 1.90816 1.56313 1.76666 1.21972 1.48085 1.39279 1.18285 1.26953 1.22625 0.91094 1.05429 0.84494 1.21887 0.95566 0.96862 1.02034 1.21524 1.00229 0.97656 0.95125 1.21978 0.94249 0.99347 0.97268 0.94208 1.20915 0.96601 0.93987 0.85449 1.44035 1.11708 1.75607 1.02432 1.20521 0.84507 0.95838 0.95756 1.19348 1.16782 1.15529 0.87317 0.92011 1.25849 1.00891 0.96637 1.01449 1.70196 1.42656 1.21160 1.24298 0.85380 0.78460 0.77479 0.79370 1.19705 1.21789 1.21084 1.21632 0.96939 0.83929 0.96933 1.74372 1.15861 1.08228 1.10330 1.81869 1.09544 1.04964 1.09508 0.87044 0.88790 0.85241 0.91474 0.90137 0.86156 0.84729 0.75395 0.90323 0.85688 0.87935 0.93330 0.90329 0.91072 0.92894 0.93315 0.98044 0.95168 0.97316 0.94299 0.91739 0.90863 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.13 14.32 67.77 0.97 -0.16 16 2 C -0.16 -0.84 9.52 25.64 0.24 -0.59 16 3 C -0.10 -0.76 5.86 29.85 0.17 -0.58 16 4 C 0.12 0.74 6.52 86.38 0.56 1.30 16 5 N -0.35 -5.32 3.69 -347.12 -1.28 -6.60 16 6 C 0.11 2.06 11.28 83.85 0.95 3.00 16 7 C -0.12 -3.15 6.69 40.82 0.27 -2.87 16 8 C 0.59 20.38 7.67 86.69 0.67 21.04 16 9 O -0.58 -24.32 16.30 -4.02 -0.07 -24.39 16 10 N -0.60 -19.37 2.97 -822.65 -2.45 -21.82 16 11 C 0.09 2.15 6.07 86.36 0.52 2.68 16 12 C -0.13 -2.90 6.08 30.67 0.19 -2.71 16 13 C -0.11 -2.80 5.17 30.62 0.16 -2.64 16 14 C -0.11 -3.83 2.54 -10.72 -0.03 -3.86 16 15 H 0.04 1.69 8.14 -2.39 -0.02 1.67 16 16 C 0.16 6.51 5.16 86.38 0.45 6.96 16 17 N -0.61 -32.41 2.75 -726.93 -2.00 -34.41 16 18 C 0.18 9.46 8.10 127.77 1.03 10.50 16 19 C -0.26 -15.03 9.61 84.03 0.81 -14.22 16 20 H 0.06 3.52 7.86 -2.91 -0.02 3.49 16 21 C -0.05 -3.14 5.06 84.86 0.43 -2.71 16 22 N -0.94 -58.18 10.99 21.65 0.24 -57.94 16 23 Si 0.97 47.52 29.57 68.60 2.03 49.55 16 24 H -0.27 -12.72 7.11 99.48 0.71 -12.02 16 25 H -0.29 -14.29 7.11 99.48 0.71 -13.59 16 26 H -0.28 -13.87 7.11 99.48 0.71 -13.17 16 27 C 0.13 4.67 4.45 86.36 0.38 5.06 16 28 N -0.21 -5.40 8.81 -49.99 -0.44 -5.84 16 29 N -0.08 -1.70 13.65 37.02 0.51 -1.20 16 30 H 0.11 0.46 8.06 -2.91 -0.02 0.44 16 31 H 0.09 0.64 7.84 -2.91 -0.02 0.61 16 32 H 0.13 0.32 8.06 -2.91 -0.02 0.30 16 33 H 0.07 0.64 7.79 -2.39 -0.02 0.62 16 34 H 0.08 0.80 8.14 -2.39 -0.02 0.78 16 35 H 0.12 0.39 8.14 -2.39 -0.02 0.37 16 36 H 0.13 0.18 8.08 -2.39 -0.02 0.16 16 37 H 0.23 3.06 8.06 -2.91 -0.02 3.03 16 38 H 0.08 1.76 8.14 -2.39 -0.02 1.74 16 39 H 0.13 3.12 4.15 -31.90 -0.13 2.99 16 40 H 0.10 1.76 8.14 -2.39 -0.02 1.74 16 41 H 0.05 1.26 8.14 -2.38 -0.02 1.24 16 42 H 0.08 1.81 8.14 -2.39 -0.02 1.79 16 43 H 0.07 1.77 8.14 -2.38 -0.02 1.75 16 44 H 0.05 2.01 8.07 -2.39 -0.02 1.99 16 45 H 0.05 2.03 8.04 -2.39 -0.02 2.01 16 46 H 0.00 0.08 7.51 -2.39 -0.02 0.06 16 47 H 0.03 1.38 6.09 -2.39 -0.01 1.37 16 48 H 0.01 0.47 7.32 -2.39 -0.02 0.46 16 49 H 0.25 14.95 8.31 -92.71 -0.77 14.17 16 50 H 0.06 2.92 5.27 -2.39 -0.01 2.90 16 51 H 0.07 2.44 8.11 -2.38 -0.02 2.43 16 Total: -1.00 -78.25 407.91 5.11 -73.14 By element: Atomic # 1 Polarization: 8.54 SS G_CDS: 0.79 Total: 9.33 kcal Atomic # 6 Polarization: 12.40 SS G_CDS: 7.78 Total: 20.18 kcal Atomic # 7 Polarization: -122.39 SS G_CDS: -5.42 Total: -127.81 kcal Atomic # 8 Polarization: -24.32 SS G_CDS: -0.07 Total: -24.39 kcal Atomic # 14 Polarization: 47.52 SS G_CDS: 2.03 Total: 49.55 kcal Total: -78.25 5.11 -73.14 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266468870.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 164.184 kcal (2) G-P(sol) polarization free energy of solvation -78.245 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 85.939 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.108 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.137 kcal (6) G-S(sol) free energy of system = (1) + (5) 91.047 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds