Wall clock time and date at job start Wed Apr 1 2020 04:43:08 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00127 * 2 1 4 4 C 1.52998 * 109.47145 * 124.99728 * 3 2 1 5 5 N 1.46504 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.34811 * 126.59168 * 124.70524 * 5 4 3 7 7 C 1.36601 * 106.83754 * 180.26859 * 6 5 4 8 8 C 1.47524 * 125.76956 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99950 * 6.79289 * 8 7 6 10 10 N 1.34773 * 119.99676 * 186.79181 * 8 7 6 11 11 C 1.46928 * 120.63545 * 5.73629 * 10 8 7 12 12 C 1.53618 * 108.54744 * 126.36662 * 11 10 8 13 13 C 1.53039 * 109.24338 * 54.85347 * 12 11 10 14 14 C 1.53040 * 109.53883 * 298.51607 * 13 12 11 15 15 H 1.08993 * 109.52216 * 301.39375 * 14 13 12 16 16 C 1.53007 * 109.49603 * 181.31419 * 14 13 12 17 17 N 1.46492 * 109.47029 * 175.16019 * 16 14 13 18 18 C 1.46497 * 120.00232 * 89.99980 * 17 16 14 19 19 C 1.36936 * 120.00063 * 270.00041 * 17 16 14 20 20 H 1.08003 * 120.00114 * 141.68232 * 19 17 16 21 21 C 1.38811 * 120.00113 * 321.67550 * 19 17 16 22 22 N 1.31622 * 120.00051 * 160.89859 * 21 19 17 23 23 Si 1.86803 * 119.99990 * 340.91166 * 21 19 17 24 24 H 1.48495 * 109.47496 * 94.72584 * 23 21 19 25 25 H 1.48498 * 109.46909 * 214.72557 * 23 21 19 26 26 H 1.48505 * 109.46755 * 334.72216 * 23 21 19 27 27 C 1.46935 * 120.62895 * 186.01086 * 10 8 7 28 28 N 1.34397 * 108.45828 * 0.02562 * 7 6 5 29 29 N 1.28758 * 109.52531 * 0.02562 * 28 7 6 30 30 H 1.07998 * 119.99812 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00069 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99812 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46974 * 4.99454 * 3 2 1 34 34 H 1.09001 * 109.47092 * 245.00096 * 3 2 1 35 35 H 1.09002 * 109.47408 * 59.99992 * 4 3 2 36 36 H 1.09001 * 109.47426 * 300.00163 * 4 3 2 37 37 H 1.08001 * 126.58320 * 0.27350 * 6 5 4 38 38 H 1.09005 * 109.58614 * 246.20330 * 11 10 8 39 39 H 1.09005 * 109.58358 * 6.61957 * 11 10 8 40 40 H 1.09004 * 109.62892 * 294.86649 * 12 11 10 41 41 H 1.09000 * 109.45856 * 174.74488 * 12 11 10 42 42 H 1.08999 * 109.45982 * 178.49003 * 13 12 11 43 43 H 1.09009 * 109.45443 * 58.53458 * 13 12 11 44 44 H 1.08999 * 109.47088 * 295.16141 * 16 14 13 45 45 H 1.09004 * 109.46673 * 55.15718 * 16 14 13 46 46 H 1.09001 * 109.47051 * 95.62221 * 18 17 16 47 47 H 1.08996 * 109.47680 * 215.62718 * 18 17 16 48 48 H 1.09005 * 109.46963 * 335.62624 * 18 17 16 49 49 H 0.97000 * 119.99588 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.58612 * 353.37472 * 27 10 8 51 51 H 1.09002 * 109.58617 * 113.65630 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7680 2.6016 1.1813 6 6 3.8449 3.4855 2.1962 7 6 4.6219 4.5213 1.7608 8 6 4.9781 5.7202 2.5431 9 8 4.6753 5.7912 3.7186 10 7 5.6391 6.7368 1.9548 11 6 5.9017 6.7221 0.5092 12 6 5.3725 8.0307 -0.0968 13 6 5.9952 9.2171 0.6427 14 6 5.5894 9.1710 2.1176 15 1 4.5028 9.1982 2.1975 16 6 6.1856 10.3754 2.8492 17 7 5.7033 10.3943 4.2323 18 6 6.4540 9.6970 5.2794 19 6 4.5509 11.0638 4.5465 20 1 3.8669 10.6501 5.2728 21 6 4.2617 12.2743 3.9317 22 7 3.0280 12.7328 3.9288 23 14 5.6236 13.2523 3.1082 24 1 5.6624 12.9247 1.6603 25 1 5.3638 14.7043 3.2803 26 1 6.9271 12.9056 3.7294 27 6 6.1162 7.8780 2.7479 28 7 5.0068 4.2634 0.4992 29 7 4.5180 3.1333 0.1227 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7400 0.5065 1.0922 36 1 2.4772 1.2356 2.1130 37 1 3.3814 3.3926 3.1673 38 1 6.9745 6.6423 0.3335 39 1 5.3907 5.8738 0.0537 40 1 4.2877 8.0684 0.0034 41 1 5.6422 8.0774 -1.1519 42 1 5.6427 10.1477 0.1980 43 1 7.0811 9.1651 0.5630 44 1 7.2730 10.3015 2.8445 45 1 5.8815 11.2931 2.3457 46 1 7.1137 10.4024 5.7845 47 1 5.7586 9.2690 6.0013 48 1 7.0483 8.9006 4.8313 49 1 2.8259 13.5785 3.4989 50 1 5.7468 7.7927 3.7698 51 1 7.2062 7.8891 2.7531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001266468871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:08 Heat of formation + Delta-G solvation = 118.638230 kcal Electronic energy + Delta-G solvation = -30997.984154 eV Core-core repulsion = 26936.574665 eV Total energy + Delta-G solvation = -4061.409489 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.46999 -39.73010 -37.51335 -36.86165 -35.63320 -34.20345 -32.72291 -31.66374 -31.24949 -30.61053 -29.68635 -26.88060 -25.51794 -25.44871 -24.96447 -22.95515 -22.37294 -21.97382 -20.84609 -20.45997 -20.18658 -19.16288 -17.56231 -16.65789 -16.50293 -16.39061 -16.11150 -15.73618 -15.27688 -15.13049 -14.79500 -14.50125 -14.23530 -14.04065 -13.74811 -13.53843 -13.45816 -13.21418 -13.01933 -12.83057 -12.75032 -12.35844 -12.27525 -12.12570 -11.92709 -11.76741 -11.72089 -11.40294 -11.27393 -10.81574 -10.71513 -10.67618 -10.60230 -10.30129 -10.10417 -9.97333 -9.93072 -9.82842 -9.57844 -9.44898 -9.42737 -8.48937 -8.28294 -6.70432 -5.90303 -3.33764 0.90951 1.55412 1.59672 1.82727 3.13081 3.34077 3.36464 3.50400 3.56107 3.90001 4.01315 4.14478 4.35507 4.51557 4.58149 4.60696 4.66363 4.76141 4.93687 4.97306 5.14643 5.19982 5.22965 5.31957 5.37473 5.40228 5.41896 5.49962 5.51502 5.69519 5.86870 6.00582 6.05270 6.07411 6.10698 6.13684 6.19384 6.23266 6.29122 6.33786 6.38436 6.49256 6.53465 6.71275 6.81071 6.84438 6.90620 7.11578 7.57080 7.77002 8.15239 8.31991 8.47623 9.07409 9.79345 10.20494 11.25622 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002318 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.169109 B =12077.327526 C =12292.636076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.179 4.179 2 C -0.160 4.160 3 C -0.107 4.107 4 C 0.126 3.874 5 N -0.361 5.361 6 C 0.093 3.907 7 C -0.090 4.090 8 C 0.598 3.402 9 O -0.536 6.536 10 N -0.592 5.592 11 C 0.083 3.917 12 C -0.131 4.131 13 C -0.118 4.118 14 C -0.118 4.118 15 H 0.083 0.917 16 C 0.146 3.854 17 N -0.613 5.613 18 C 0.123 3.877 19 C -0.261 4.261 20 H 0.078 0.922 21 C 0.031 3.969 22 N -0.906 5.906 23 Si 0.884 3.116 24 H -0.286 1.286 25 H -0.304 1.304 26 H -0.270 1.270 27 C 0.123 3.877 28 N -0.204 5.204 29 N -0.069 5.069 30 H 0.099 0.901 31 H 0.102 0.898 32 H 0.115 0.885 33 H 0.077 0.923 34 H 0.091 0.909 35 H 0.100 0.900 36 H 0.107 0.893 37 H 0.205 0.795 38 H 0.063 0.937 39 H 0.126 0.874 40 H 0.064 0.936 41 H 0.069 0.931 42 H 0.063 0.937 43 H 0.058 0.942 44 H 0.039 0.961 45 H 0.056 0.944 46 H 0.008 0.992 47 H 0.039 0.961 48 H 0.033 0.967 49 H 0.262 0.738 50 H 0.103 0.897 51 H 0.059 0.941 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.023 -26.160 -9.827 27.963 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.179 4.179 3 C -0.145 4.145 4 C 0.005 3.995 5 N -0.146 5.146 6 C -0.063 4.063 7 C -0.229 4.229 8 C 0.383 3.617 9 O -0.412 6.412 10 N -0.323 5.323 11 C -0.040 4.040 12 C -0.169 4.169 13 C -0.156 4.156 14 C -0.140 4.140 15 H 0.102 0.898 16 C 0.019 3.981 17 N -0.337 5.337 18 C -0.022 4.022 19 C -0.390 4.390 20 H 0.096 0.904 21 C -0.168 4.168 22 N -0.548 5.548 23 Si 0.715 3.285 24 H -0.214 1.214 25 H -0.232 1.232 26 H -0.195 1.195 27 C 0.002 3.998 28 N -0.077 5.077 29 N -0.049 5.049 30 H 0.117 0.883 31 H 0.120 0.880 32 H 0.133 0.867 33 H 0.096 0.904 34 H 0.110 0.890 35 H 0.118 0.882 36 H 0.125 0.875 37 H 0.222 0.778 38 H 0.082 0.918 39 H 0.143 0.857 40 H 0.083 0.917 41 H 0.088 0.912 42 H 0.082 0.918 43 H 0.077 0.923 44 H 0.058 0.942 45 H 0.073 0.927 46 H 0.026 0.974 47 H 0.058 0.942 48 H 0.051 0.949 49 H 0.071 0.929 50 H 0.121 0.879 51 H 0.077 0.923 Dipole moment (debyes) X Y Z Total from point charges 1.228 -26.255 -10.611 28.345 hybrid contribution 0.214 0.738 0.349 0.844 sum 1.443 -25.517 -10.263 27.541 Atomic orbital electron populations 1.23985 0.95905 1.02392 0.99253 1.22724 0.96014 0.97585 1.01567 1.21032 0.98042 0.96866 0.98548 1.22041 0.94440 0.81332 1.01641 1.50500 1.35828 1.17381 1.10935 1.23406 0.98379 0.89098 0.95458 1.21583 1.07996 1.00048 0.93274 1.16813 0.78080 0.81093 0.85725 1.90828 1.54573 1.80315 1.15506 1.47970 1.54951 1.20052 1.09319 1.22626 1.01384 1.00398 0.79641 1.21967 1.01088 0.94756 0.99117 1.21596 1.00029 0.97972 0.96012 1.22131 1.02819 0.95529 0.93483 0.89842 1.21183 0.95485 0.95378 0.86035 1.44041 1.27235 1.61183 1.01195 1.21153 0.94740 0.94426 0.91923 1.18808 0.95415 0.99747 1.25012 0.90412 1.25486 0.95903 0.96669 0.98788 1.69847 1.17581 1.21423 1.45919 0.86829 0.84231 0.78853 0.78573 1.21413 1.23196 1.19544 1.21862 0.97439 0.83684 0.96864 1.74378 1.16120 1.06901 1.10339 1.81957 1.09130 1.05001 1.08769 0.88299 0.87985 0.86731 0.90448 0.89037 0.88161 0.87474 0.77794 0.91834 0.85716 0.91725 0.91235 0.91843 0.92324 0.94243 0.92672 0.97414 0.94190 0.94852 0.92857 0.87919 0.92312 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.18 -0.74 14.32 29.01 0.42 -0.32 16 2 C -0.16 -0.63 9.52 -36.03 -0.34 -0.97 16 3 C -0.11 -0.52 5.86 -27.88 -0.16 -0.69 16 4 C 0.13 0.57 6.52 -4.04 -0.03 0.55 16 5 N -0.36 -3.15 3.69 -61.06 -0.23 -3.38 16 6 C 0.09 0.94 11.28 -16.83 -0.19 0.75 16 7 C -0.09 -1.22 6.71 -83.55 -0.56 -1.78 16 8 C 0.60 9.99 7.68 -12.48 -0.10 9.90 16 9 O -0.54 -10.46 16.29 5.28 0.09 -10.38 16 10 N -0.59 -9.66 2.97 -173.73 -0.52 -10.17 16 11 C 0.08 1.14 6.15 -3.49 -0.02 1.12 16 12 C -0.13 -1.83 6.10 -26.39 -0.16 -1.99 16 13 C -0.12 -1.88 5.16 -26.69 -0.14 -2.01 16 14 C -0.12 -2.27 2.55 -90.50 -0.23 -2.51 16 15 H 0.08 1.91 8.14 -51.93 -0.42 1.48 16 16 C 0.15 3.17 3.94 -4.04 -0.02 3.16 16 17 N -0.61 -14.98 2.32 -181.12 -0.42 -15.41 16 18 C 0.12 2.57 9.65 59.85 0.58 3.15 16 19 C -0.26 -7.52 9.97 -15.06 -0.15 -7.67 16 20 H 0.08 2.44 8.06 -52.48 -0.42 2.02 16 21 C 0.03 0.92 5.35 -17.43 -0.09 0.83 16 22 N -0.91 -28.26 13.97 55.49 0.78 -27.49 16 23 Si 0.88 22.78 24.87 -169.99 -4.23 18.55 16 24 H -0.29 -7.07 6.69 56.52 0.38 -6.69 16 25 H -0.30 -7.94 7.11 56.52 0.40 -7.54 16 26 H -0.27 -6.85 7.11 56.52 0.40 -6.45 16 27 C 0.12 2.18 4.45 -3.71 -0.02 2.17 16 28 N -0.20 -2.70 8.75 32.85 0.29 -2.41 16 29 N -0.07 -0.80 13.64 60.35 0.82 0.02 16 30 H 0.10 0.42 7.84 -52.49 -0.41 0.01 16 31 H 0.10 0.33 8.06 -52.49 -0.42 -0.10 16 32 H 0.11 0.31 8.06 -52.49 -0.42 -0.11 16 33 H 0.08 0.45 7.79 -51.93 -0.40 0.04 16 34 H 0.09 0.54 8.14 -51.93 -0.42 0.12 16 35 H 0.10 0.32 8.14 -51.93 -0.42 -0.10 16 36 H 0.11 0.26 8.08 -51.93 -0.42 -0.16 16 37 H 0.21 1.51 8.06 -52.49 -0.42 1.09 16 38 H 0.06 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.13 1.70 4.02 -89.87 -0.36 1.34 16 40 H 0.06 0.98 8.14 -51.93 -0.42 0.56 16 41 H 0.07 0.81 8.14 -51.93 -0.42 0.39 16 42 H 0.06 1.05 8.14 -51.93 -0.42 0.63 16 43 H 0.06 0.84 8.14 -51.92 -0.42 0.42 16 44 H 0.04 0.77 8.07 -51.93 -0.42 0.35 16 45 H 0.06 1.32 3.09 -51.93 -0.16 1.16 16 46 H 0.01 0.16 8.14 -51.93 -0.42 -0.26 16 47 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 48 H 0.03 0.60 6.30 -51.93 -0.33 0.28 16 49 H 0.26 7.73 8.31 -40.82 -0.34 7.39 16 50 H 0.10 2.09 5.35 -51.93 -0.28 1.81 16 51 H 0.06 0.95 8.10 -51.93 -0.42 0.53 16 LS Contribution 403.17 15.07 6.08 6.08 Total: -1.00 -35.07 403.17 -6.83 -41.90 By element: Atomic # 1 Polarization: 7.27 SS G_CDS: -8.28 Total: -1.01 kcal Atomic # 6 Polarization: 4.90 SS G_CDS: -1.21 Total: 3.69 kcal Atomic # 7 Polarization: -59.55 SS G_CDS: 0.72 Total: -58.83 kcal Atomic # 8 Polarization: -10.46 SS G_CDS: 0.09 Total: -10.38 kcal Atomic # 14 Polarization: 22.78 SS G_CDS: -4.23 Total: 18.55 kcal Total LS contribution 6.08 Total: 6.08 kcal Total: -35.07 -6.83 -41.90 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266468871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 160.536 kcal (2) G-P(sol) polarization free energy of solvation -35.067 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 125.469 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.831 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.898 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.638 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds