Wall clock time and date at job start Wed Apr 1 2020 04:43:07 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.31000 * 1 3 3 C 1.50700 * 120.00127 * 2 1 4 4 C 1.52998 * 109.47145 * 124.99728 * 3 2 1 5 5 N 1.46504 * 109.47136 * 179.97438 * 4 3 2 6 6 C 1.34811 * 126.59168 * 124.70524 * 5 4 3 7 7 C 1.36601 * 106.83754 * 180.26859 * 6 5 4 8 8 C 1.47524 * 125.76956 * 180.02562 * 7 6 5 9 9 O 1.21593 * 119.99950 * 6.79289 * 8 7 6 10 10 N 1.34773 * 119.99676 * 186.79181 * 8 7 6 11 11 C 1.46928 * 120.63545 * 5.73629 * 10 8 7 12 12 C 1.53618 * 108.54744 * 126.36662 * 11 10 8 13 13 C 1.53039 * 109.24338 * 54.85347 * 12 11 10 14 14 C 1.53040 * 109.53883 * 298.51607 * 13 12 11 15 15 H 1.08993 * 109.52216 * 301.39375 * 14 13 12 16 16 C 1.53007 * 109.49603 * 181.31419 * 14 13 12 17 17 N 1.46492 * 109.47029 * 175.16019 * 16 14 13 18 18 C 1.46497 * 120.00232 * 89.99980 * 17 16 14 19 19 C 1.36936 * 120.00063 * 270.00041 * 17 16 14 20 20 H 1.08003 * 120.00114 * 141.68232 * 19 17 16 21 21 C 1.38811 * 120.00113 * 321.67550 * 19 17 16 22 22 N 1.31622 * 120.00051 * 160.89859 * 21 19 17 23 23 Si 1.86803 * 119.99990 * 340.91166 * 21 19 17 24 24 H 1.48495 * 109.47496 * 94.72584 * 23 21 19 25 25 H 1.48498 * 109.46909 * 214.72557 * 23 21 19 26 26 H 1.48505 * 109.46755 * 334.72216 * 23 21 19 27 27 C 1.46935 * 120.62895 * 186.01086 * 10 8 7 28 28 N 1.34397 * 108.45828 * 0.02562 * 7 6 5 29 29 N 1.28758 * 109.52531 * 0.02562 * 28 7 6 30 30 H 1.07998 * 119.99812 * 0.02562 * 1 2 3 31 31 H 1.07997 * 120.00069 * 180.02562 * 1 2 3 32 32 H 1.07998 * 119.99812 * 179.97438 * 2 1 3 33 33 H 1.09002 * 109.46974 * 4.99454 * 3 2 1 34 34 H 1.09001 * 109.47092 * 245.00096 * 3 2 1 35 35 H 1.09002 * 109.47408 * 59.99992 * 4 3 2 36 36 H 1.09001 * 109.47426 * 300.00163 * 4 3 2 37 37 H 1.08001 * 126.58320 * 0.27350 * 6 5 4 38 38 H 1.09005 * 109.58614 * 246.20330 * 11 10 8 39 39 H 1.09005 * 109.58358 * 6.61957 * 11 10 8 40 40 H 1.09004 * 109.62892 * 294.86649 * 12 11 10 41 41 H 1.09000 * 109.45856 * 174.74488 * 12 11 10 42 42 H 1.08999 * 109.45982 * 178.49003 * 13 12 11 43 43 H 1.09009 * 109.45443 * 58.53458 * 13 12 11 44 44 H 1.08999 * 109.47088 * 295.16141 * 16 14 13 45 45 H 1.09004 * 109.46673 * 55.15718 * 16 14 13 46 46 H 1.09001 * 109.47051 * 95.62221 * 18 17 16 47 47 H 1.08996 * 109.47680 * 215.62718 * 18 17 16 48 48 H 1.09005 * 109.46963 * 335.62624 * 18 17 16 49 49 H 0.97000 * 119.99588 * 180.02562 * 22 21 19 50 50 H 1.08994 * 109.58612 * 353.37472 * 27 10 8 51 51 H 1.09002 * 109.58617 * 113.65630 * 27 10 8 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.3100 0.0000 0.0000 3 6 2.0635 1.3051 0.0000 4 6 3.0350 1.3331 1.1816 5 7 3.7680 2.6016 1.1813 6 6 3.8449 3.4855 2.1962 7 6 4.6219 4.5213 1.7608 8 6 4.9781 5.7202 2.5431 9 8 4.6753 5.7912 3.7186 10 7 5.6391 6.7368 1.9548 11 6 5.9017 6.7221 0.5092 12 6 5.3725 8.0307 -0.0968 13 6 5.9952 9.2171 0.6427 14 6 5.5894 9.1710 2.1176 15 1 4.5028 9.1982 2.1975 16 6 6.1856 10.3754 2.8492 17 7 5.7033 10.3943 4.2323 18 6 6.4540 9.6970 5.2794 19 6 4.5509 11.0638 4.5465 20 1 3.8669 10.6501 5.2728 21 6 4.2617 12.2743 3.9317 22 7 3.0280 12.7328 3.9288 23 14 5.6236 13.2523 3.1082 24 1 5.6624 12.9247 1.6603 25 1 5.3638 14.7043 3.2803 26 1 6.9271 12.9056 3.7294 27 6 6.1162 7.8780 2.7479 28 7 5.0068 4.2634 0.4992 29 7 4.5180 3.1333 0.1227 30 1 -0.5400 0.9353 -0.0004 31 1 -0.5400 -0.9353 0.0004 32 1 1.8500 -0.9353 0.0004 33 1 1.3586 2.1316 0.0895 34 1 2.6213 1.4026 -0.9314 35 1 3.7400 0.5065 1.0922 36 1 2.4772 1.2356 2.1130 37 1 3.3814 3.3926 3.1673 38 1 6.9745 6.6423 0.3335 39 1 5.3907 5.8738 0.0537 40 1 4.2877 8.0684 0.0034 41 1 5.6422 8.0774 -1.1519 42 1 5.6427 10.1477 0.1980 43 1 7.0811 9.1651 0.5630 44 1 7.2730 10.3015 2.8445 45 1 5.8815 11.2931 2.3457 46 1 7.1137 10.4024 5.7845 47 1 5.7586 9.2690 6.0013 48 1 7.0483 8.9006 4.8313 49 1 2.8259 13.5785 3.4989 50 1 5.7468 7.7927 3.7698 51 1 7.2062 7.8891 2.7531 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001266468871.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:43:07 Heat of formation + Delta-G solvation = 95.624550 kcal Electronic energy + Delta-G solvation = -30998.982103 eV Core-core repulsion = 26936.574665 eV Total energy + Delta-G solvation = -4062.407437 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.34532 -41.01468 -38.98140 -37.42359 -37.23934 -34.89884 -34.19694 -33.58104 -32.31778 -31.87216 -30.35046 -28.55701 -27.30537 -26.69718 -25.63310 -24.07676 -23.72540 -22.83133 -22.56003 -21.53368 -20.76671 -20.33802 -18.79751 -18.39076 -17.60496 -17.41015 -17.22466 -16.93276 -16.30275 -16.16556 -15.97130 -15.82424 -15.47661 -15.10220 -15.04144 -15.00094 -14.78516 -14.38479 -14.11327 -13.99279 -13.84029 -13.78511 -13.63508 -13.33913 -13.14465 -13.02454 -12.72704 -12.62543 -12.39760 -12.34945 -12.07499 -12.02876 -11.92177 -11.73136 -11.51887 -11.49087 -11.31365 -11.23330 -10.87395 -10.63602 -10.42282 -10.27461 -9.59346 -8.72894 -8.18374 -5.59824 0.10017 0.55326 1.00096 1.29318 1.40170 1.40907 1.53101 1.94284 2.19181 2.42080 3.05254 3.06885 3.30852 3.42235 3.68650 3.77933 3.89923 3.92139 3.93181 4.02236 4.09711 4.12080 4.20480 4.34058 4.36670 4.37361 4.40378 4.56545 4.62607 4.67004 4.74156 4.78018 4.82428 4.83939 4.90600 4.96229 5.03205 5.06018 5.09270 5.12377 5.17546 5.25072 5.37106 5.41107 5.53288 5.64274 5.72067 5.82641 5.95701 6.16143 6.35531 6.81207 6.99724 7.09160 7.63303 8.04613 9.01808 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.017483 B = 0.002318 C = 0.002277 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1601.169109 B =12077.327526 C =12292.636076 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.188 4.188 2 C -0.157 4.157 3 C -0.103 4.103 4 C 0.118 3.882 5 N -0.345 5.345 6 C 0.109 3.891 7 C -0.119 4.119 8 C 0.592 3.408 9 O -0.576 6.576 10 N -0.596 5.596 11 C 0.084 3.916 12 C -0.126 4.126 13 C -0.114 4.114 14 C -0.109 4.109 15 H 0.032 0.968 16 C 0.140 3.860 17 N -0.625 5.625 18 C 0.124 3.876 19 C -0.256 4.256 20 H 0.030 0.970 21 C -0.027 4.027 22 N -0.956 5.956 23 Si 0.955 3.045 24 H -0.268 1.268 25 H -0.310 1.310 26 H -0.256 1.256 27 C 0.130 3.870 28 N -0.216 5.216 29 N -0.080 5.080 30 H 0.092 0.908 31 H 0.112 0.888 32 H 0.131 0.869 33 H 0.065 0.935 34 H 0.080 0.920 35 H 0.122 0.878 36 H 0.135 0.865 37 H 0.231 0.769 38 H 0.085 0.915 39 H 0.130 0.870 40 H 0.042 0.958 41 H 0.102 0.898 42 H 0.055 0.945 43 H 0.088 0.912 44 H 0.075 0.925 45 H 0.036 0.964 46 H 0.018 0.982 47 H 0.026 0.974 48 H 0.065 0.935 49 H 0.262 0.738 50 H 0.071 0.929 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 3.452 -28.358 -11.648 30.851 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.175 4.175 3 C -0.141 4.141 4 C -0.001 4.001 5 N -0.130 5.130 6 C -0.049 4.049 7 C -0.258 4.258 8 C 0.380 3.620 9 O -0.456 6.456 10 N -0.326 5.326 11 C -0.038 4.038 12 C -0.164 4.164 13 C -0.152 4.152 14 C -0.131 4.131 15 H 0.051 0.949 16 C 0.015 3.985 17 N -0.349 5.349 18 C -0.021 4.021 19 C -0.386 4.386 20 H 0.048 0.952 21 C -0.223 4.223 22 N -0.600 5.600 23 Si 0.784 3.216 24 H -0.195 1.195 25 H -0.239 1.239 26 H -0.180 1.180 27 C 0.008 3.992 28 N -0.089 5.089 29 N -0.059 5.059 30 H 0.110 0.890 31 H 0.130 0.870 32 H 0.149 0.851 33 H 0.083 0.917 34 H 0.099 0.901 35 H 0.140 0.860 36 H 0.153 0.847 37 H 0.247 0.753 38 H 0.103 0.897 39 H 0.147 0.853 40 H 0.060 0.940 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.106 0.894 44 H 0.093 0.907 45 H 0.054 0.946 46 H 0.036 0.964 47 H 0.044 0.956 48 H 0.084 0.916 49 H 0.071 0.929 50 H 0.090 0.910 51 H 0.104 0.896 Dipole moment (debyes) X Y Z Total from point charges 3.686 -28.509 -12.480 31.339 hybrid contribution -0.671 1.233 0.947 1.694 sum 3.016 -27.276 -11.533 29.767 Atomic orbital electron populations 1.24103 0.96220 1.02648 0.99453 1.22768 0.95876 0.97587 1.01296 1.20963 0.97778 0.97143 0.98221 1.22512 0.94807 0.79901 1.02855 1.50759 1.34652 1.17927 1.09662 1.23762 0.96763 0.88011 0.96325 1.21292 1.10469 1.00139 0.93869 1.17237 0.77328 0.81925 0.85550 1.90794 1.56195 1.81315 1.17274 1.48071 1.54776 1.19461 1.10340 1.22793 1.02738 1.00371 0.77900 1.21947 0.99605 0.94042 1.00789 1.21582 1.01891 0.98490 0.93216 1.21913 0.99505 0.95527 0.96130 0.94903 1.21324 0.97430 0.95446 0.84329 1.44147 1.26396 1.61061 1.03311 1.21216 0.94502 0.95120 0.91214 1.18622 0.96226 1.00044 1.23691 0.95184 1.26172 0.98069 0.97684 1.00359 1.69997 1.19853 1.22028 1.48141 0.85676 0.81119 0.76286 0.78532 1.19478 1.23862 1.18016 1.21640 0.98648 0.83568 0.95391 1.74292 1.16758 1.07664 1.10164 1.81873 1.09625 1.04710 1.09713 0.88969 0.86987 0.85075 0.91674 0.90135 0.85985 0.84668 0.75266 0.89664 0.85274 0.93957 0.88004 0.92605 0.89376 0.90711 0.94626 0.96386 0.95558 0.91628 0.92880 0.91011 0.89612 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.19 -1.27 14.32 67.78 0.97 -0.30 16 2 C -0.16 -0.89 9.52 25.65 0.24 -0.65 16 3 C -0.10 -0.82 5.86 29.85 0.17 -0.65 16 4 C 0.12 0.73 6.52 86.38 0.56 1.30 16 5 N -0.35 -5.29 3.69 -347.09 -1.28 -6.57 16 6 C 0.11 2.03 11.28 83.85 0.95 2.98 16 7 C -0.12 -3.13 6.71 40.82 0.27 -2.86 16 8 C 0.59 19.92 7.68 86.69 0.67 20.59 16 9 O -0.58 -23.17 16.29 -4.01 -0.07 -23.23 16 10 N -0.60 -19.07 2.97 -821.82 -2.44 -21.51 16 11 C 0.08 2.15 6.15 86.51 0.53 2.69 16 12 C -0.13 -3.26 6.10 30.82 0.19 -3.07 16 13 C -0.11 -3.36 5.16 30.62 0.16 -3.21 16 14 C -0.11 -4.17 2.55 -10.72 -0.03 -4.19 16 15 H 0.03 1.57 8.14 -2.39 -0.02 1.55 16 16 C 0.14 5.90 3.94 86.38 0.34 6.24 16 17 N -0.62 -30.72 2.32 -726.94 -1.69 -32.41 16 18 C 0.12 5.13 9.65 127.77 1.23 6.36 16 19 C -0.26 -15.36 9.97 84.03 0.84 -14.52 16 20 H 0.03 2.05 8.06 -2.91 -0.02 2.02 16 21 C -0.03 -1.66 5.35 84.86 0.45 -1.20 16 22 N -0.96 -62.17 13.97 21.65 0.30 -61.87 16 23 Si 0.96 47.51 24.87 68.60 1.71 49.21 16 24 H -0.27 -12.43 6.69 99.48 0.67 -11.76 16 25 H -0.31 -15.59 7.11 99.48 0.71 -14.88 16 26 H -0.26 -12.03 7.11 99.48 0.71 -11.32 16 27 C 0.13 4.50 4.45 86.36 0.38 4.89 16 28 N -0.22 -5.43 8.75 -49.99 -0.44 -5.87 16 29 N -0.08 -1.72 13.64 37.02 0.51 -1.21 16 30 H 0.09 0.73 7.84 -2.91 -0.02 0.71 16 31 H 0.11 0.52 8.06 -2.91 -0.02 0.50 16 32 H 0.13 0.33 8.06 -2.91 -0.02 0.30 16 33 H 0.06 0.69 7.79 -2.39 -0.02 0.67 16 34 H 0.08 0.84 8.14 -2.39 -0.02 0.82 16 35 H 0.12 0.34 8.14 -2.39 -0.02 0.32 16 36 H 0.14 0.16 8.08 -2.39 -0.02 0.14 16 37 H 0.23 2.93 8.06 -2.91 -0.02 2.91 16 38 H 0.09 1.84 8.14 -2.38 -0.02 1.83 16 39 H 0.13 3.31 4.02 -51.48 -0.21 3.10 16 40 H 0.04 1.28 8.14 -2.38 -0.02 1.26 16 41 H 0.10 2.03 8.14 -2.39 -0.02 2.01 16 42 H 0.06 1.74 8.14 -2.39 -0.02 1.72 16 43 H 0.09 2.13 8.14 -2.38 -0.02 2.11 16 44 H 0.07 2.64 8.07 -2.39 -0.02 2.62 16 45 H 0.04 1.65 3.09 -2.39 -0.01 1.65 16 46 H 0.02 0.71 8.14 -2.39 -0.02 0.69 16 47 H 0.03 1.13 8.08 -2.39 -0.02 1.11 16 48 H 0.07 2.27 6.30 -2.38 -0.02 2.25 16 49 H 0.26 16.08 8.31 -92.71 -0.77 15.31 16 50 H 0.07 2.96 5.35 -2.39 -0.01 2.95 16 51 H 0.09 2.51 8.10 -2.39 -0.02 2.49 16 Total: -1.00 -81.21 403.17 5.22 -75.99 By element: Atomic # 1 Polarization: 12.39 SS G_CDS: 0.68 Total: 13.07 kcal Atomic # 6 Polarization: 6.45 SS G_CDS: 7.94 Total: 14.39 kcal Atomic # 7 Polarization: -124.39 SS G_CDS: -5.04 Total: -129.43 kcal Atomic # 8 Polarization: -23.17 SS G_CDS: -0.07 Total: -23.23 kcal Atomic # 14 Polarization: 47.51 SS G_CDS: 1.71 Total: 49.21 kcal Total: -81.21 5.22 -75.99 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001266468871.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 171.611 kcal (2) G-P(sol) polarization free energy of solvation -81.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 90.405 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.220 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -75.987 kcal (6) G-S(sol) free energy of system = (1) + (5) 95.625 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds