Wall clock time and date at job start Wed Apr 1 2020 04:46:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99997 * 2 1 4 4 C 1.53001 * 109.46930 * 89.99932 * 3 2 1 5 5 N 1.46897 * 109.46844 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99800 * 170.00379 * 5 4 3 7 7 C 1.53237 * 109.34066 * 172.74901 * 6 5 4 8 8 N 1.47074 * 108.52291 * 53.82578 * 7 6 5 9 9 C 1.36937 * 120.88214 * 128.79710 * 8 7 6 10 10 H 1.08006 * 119.99943 * 210.26145 * 9 8 7 11 11 C 1.38814 * 120.00371 * 30.25675 * 9 8 7 12 12 N 1.31620 * 119.99573 * 9.93733 * 11 9 8 13 13 Si 1.86796 * 120.00286 * 189.93547 * 11 9 8 14 14 H 1.48490 * 109.47092 * 60.00089 * 13 11 9 15 15 H 1.48497 * 109.47043 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47220 * 300.00150 * 13 11 9 17 17 C 1.47081 * 118.23813 * 308.81528 * 8 7 6 18 18 C 1.46893 * 111.00295 * 45.69999 * 5 4 3 19 19 C 1.34782 * 119.99919 * 180.02562 * 2 1 3 20 20 O 1.21567 * 120.00033 * 185.39101 * 19 2 1 21 21 C 1.47710 * 119.99871 * 5.38880 * 19 2 1 22 22 N 1.31842 * 126.57413 * 356.23099 * 21 19 2 23 23 N 1.28463 * 110.06229 * 179.88303 * 22 21 19 24 24 H 0.96999 * 124.88456 * 180.18298 * 23 22 21 25 25 C 1.35259 * 110.22810 * 0.40297 * 23 22 21 26 26 C 1.35049 * 107.07330 * 359.74174 * 25 23 22 27 27 C 1.50952 * 110.52444 * 180.02562 * 26 25 23 28 28 C 1.54510 * 104.96401 * 16.77577 * 27 26 25 29 29 C 1.51233 * 142.76822 * 179.72523 * 25 23 22 30 30 H 1.09004 * 109.47083 * 95.22157 * 1 2 3 31 31 H 1.09000 * 109.47520 * 215.22206 * 1 2 3 32 32 H 1.08997 * 109.47225 * 335.22299 * 1 2 3 33 33 H 1.08995 * 109.47344 * 330.00222 * 3 2 1 34 34 H 1.09004 * 109.46788 * 209.99952 * 3 2 1 35 35 H 1.09004 * 109.46687 * 60.00184 * 4 3 2 36 36 H 1.08996 * 109.47517 * 300.00008 * 4 3 2 37 37 H 1.08998 * 109.49624 * 52.78094 * 6 5 4 38 38 H 1.09005 * 109.48801 * 292.70389 * 6 5 4 39 39 H 1.08996 * 109.63139 * 173.53929 * 7 6 5 40 40 H 1.09002 * 109.62759 * 293.92331 * 7 6 5 41 41 H 0.97000 * 120.00136 * 180.02562 * 12 11 9 42 42 H 1.09003 * 109.62875 * 170.89019 * 17 8 7 43 43 H 1.08997 * 109.63130 * 291.47871 * 17 8 7 44 44 H 1.09006 * 109.49353 * 67.28683 * 18 5 4 45 45 H 1.08998 * 109.51495 * 307.22721 * 18 5 4 46 46 H 1.09001 * 110.33831 * 135.64736 * 27 26 25 47 47 H 1.08992 * 110.34259 * 257.79747 * 27 26 25 48 48 H 1.09002 * 110.93135 * 92.68768 * 28 27 26 49 49 H 1.09004 * 110.92888 * 216.31287 * 28 27 26 50 50 H 1.09003 * 110.32535 * 44.29934 * 29 25 23 51 51 H 1.08999 * 110.41120 * 282.12400 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1875 2.9822 1.4425 6 6 3.2446 3.5572 2.7931 7 6 4.1672 4.7807 2.7852 8 7 3.7105 5.7036 1.7352 9 6 3.4889 7.0267 2.0100 10 1 2.7393 7.5746 1.4583 11 6 4.2276 7.6637 2.9977 12 7 5.2678 7.0608 3.5333 13 14 3.7454 9.3763 3.5665 14 1 2.3655 9.3458 4.1141 15 1 4.6870 9.8311 4.6209 16 1 3.8008 10.3139 2.4163 17 6 3.4976 5.1677 0.3821 18 6 2.6013 3.9291 0.4846 19 6 2.1389 -1.1673 -0.0005 20 8 3.3505 -1.1697 0.0984 21 6 1.4052 -2.4436 -0.1212 22 7 0.0964 -2.5962 -0.1655 23 7 -0.1986 -3.8416 -0.2755 24 1 -1.1001 -4.1956 -0.3291 25 6 0.9287 -4.5887 -0.3009 26 6 1.9716 -3.7362 -0.2053 27 6 3.2776 -4.4929 -0.2271 28 6 2.9192 -5.8913 -0.7779 29 6 1.4271 -6.0134 -0.3963 30 1 -0.3633 -0.0935 -1.0234 31 1 -0.3634 -0.8395 0.5927 32 1 -0.3633 0.9330 0.4307 33 1 1.6085 2.0284 -0.5138 34 1 3.1499 1.1383 -0.5139 35 1 3.0416 0.9507 1.9563 36 1 1.5001 1.8407 1.9564 37 1 3.6325 2.8135 3.4891 38 1 2.2438 3.8585 3.1027 39 1 4.1241 5.2781 3.7541 40 1 5.1906 4.4662 2.5805 41 1 5.7838 7.5057 4.2237 42 1 3.0116 5.9211 -0.2379 43 1 4.4560 4.8907 -0.0570 44 1 1.6094 4.2251 0.8263 45 1 2.5224 3.4552 -0.4938 46 1 3.9914 -3.9979 -0.8854 47 1 3.6854 -4.5739 0.7804 48 1 3.0490 -5.9288 -1.8595 49 1 3.5110 -6.6656 -0.2895 50 1 0.8818 -6.5543 -1.1697 51 1 1.3217 -6.5181 0.5640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001267573346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:34 Heat of formation + Delta-G solvation = 101.342315 kcal Electronic energy + Delta-G solvation = -30623.616411 eV Core-core repulsion = 26561.456914 eV Total energy + Delta-G solvation = -4062.159496 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.25 seconds Orbital eigenvalues (eV) -43.23321 -39.70873 -38.05062 -37.22181 -35.74648 -34.27547 -32.37194 -31.32246 -30.18991 -29.21725 -28.87013 -27.91945 -26.84164 -26.07777 -24.06862 -23.22148 -22.33337 -22.06387 -21.09179 -20.32093 -19.07079 -18.96397 -17.97949 -16.89286 -16.81975 -16.62039 -16.10732 -15.49911 -15.05003 -14.71037 -14.56160 -14.29881 -13.88676 -13.76748 -13.60702 -13.47659 -13.36252 -13.26545 -13.19369 -12.95576 -12.84278 -12.45430 -12.18642 -12.07395 -11.79610 -11.57513 -11.53151 -11.30966 -11.03477 -10.85439 -10.80706 -10.65171 -10.44506 -10.22921 -10.10342 -9.99881 -9.68980 -9.64799 -9.56571 -8.98064 -8.64853 -8.44880 -7.70600 -6.53553 -5.71113 -3.17981 1.28799 1.75663 2.26431 2.88298 3.26171 3.41629 3.46632 3.47660 3.80861 4.18011 4.21542 4.52033 4.55540 4.58244 4.68558 4.77944 5.06446 5.10659 5.17348 5.20720 5.28240 5.33847 5.46696 5.48289 5.49454 5.52150 5.55793 5.65482 5.75826 5.78898 5.82557 5.90795 5.99328 6.05524 6.12356 6.15343 6.21245 6.35377 6.41347 6.50655 6.62286 6.65985 6.79452 7.02321 7.25855 7.34919 7.51029 7.69964 7.76649 7.79758 7.89218 8.11633 8.53044 9.28962 9.90629 10.51348 11.37140 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.001854 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.774290 B =15098.740430 C =15521.816496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.079 3.921 2 N -0.604 5.604 3 C 0.115 3.885 4 C 0.044 3.956 5 N -0.528 5.528 6 C 0.037 3.963 7 C 0.179 3.821 8 N -0.596 5.596 9 C -0.251 4.251 10 H 0.063 0.937 11 C 0.002 3.998 12 N -0.906 5.906 13 Si 0.906 3.094 14 H -0.285 1.285 15 H -0.290 1.290 16 H -0.283 1.283 17 C 0.148 3.852 18 C 0.036 3.964 19 C 0.596 3.404 20 O -0.520 6.520 21 C 0.015 3.985 22 N -0.250 5.250 23 N -0.368 5.368 24 H 0.443 0.557 25 C -0.023 4.023 26 C -0.159 4.159 27 C -0.049 4.049 28 C -0.116 4.116 29 C -0.036 4.036 30 H 0.055 0.945 31 H 0.089 0.911 32 H 0.068 0.932 33 H 0.082 0.918 34 H 0.093 0.907 35 H 0.074 0.926 36 H 0.025 0.975 37 H 0.060 0.940 38 H 0.023 0.977 39 H 0.089 0.911 40 H 0.027 0.973 41 H 0.254 0.746 42 H 0.054 0.946 43 H 0.026 0.974 44 H 0.026 0.974 45 H 0.065 0.935 46 H 0.081 0.919 47 H 0.082 0.918 48 H 0.077 0.923 49 H 0.085 0.915 50 H 0.077 0.923 51 H 0.086 0.914 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -12.591 -28.731 -9.014 32.638 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.338 5.338 3 C -0.007 4.007 4 C -0.086 4.086 5 N -0.254 5.254 6 C -0.092 4.092 7 C 0.053 3.947 8 N -0.319 5.319 9 C -0.381 4.381 10 H 0.081 0.919 11 C -0.196 4.196 12 N -0.550 5.550 13 Si 0.735 3.265 14 H -0.211 1.211 15 H -0.216 1.216 16 H -0.209 1.209 17 C 0.022 3.978 18 C -0.093 4.093 19 C 0.382 3.618 20 O -0.393 6.393 21 C -0.146 4.146 22 N -0.086 5.086 23 N -0.080 5.080 24 H 0.287 0.713 25 C -0.150 4.150 26 C -0.169 4.169 27 C -0.087 4.087 28 C -0.154 4.154 29 C -0.075 4.075 30 H 0.074 0.926 31 H 0.107 0.893 32 H 0.087 0.913 33 H 0.101 0.899 34 H 0.112 0.888 35 H 0.092 0.908 36 H 0.043 0.957 37 H 0.078 0.922 38 H 0.042 0.958 39 H 0.108 0.892 40 H 0.045 0.955 41 H 0.064 0.936 42 H 0.073 0.927 43 H 0.044 0.956 44 H 0.044 0.956 45 H 0.083 0.917 46 H 0.099 0.901 47 H 0.100 0.900 48 H 0.095 0.905 49 H 0.103 0.897 50 H 0.096 0.904 51 H 0.105 0.895 Dipole moment (debyes) X Y Z Total from point charges -12.292 -28.073 -8.950 31.926 hybrid contribution -1.204 0.531 0.637 1.462 sum -13.496 -27.542 -8.313 31.778 Atomic orbital electron populations 1.22030 0.78714 1.03348 1.02315 1.47719 1.07526 1.05714 1.72807 1.21755 0.98055 0.83205 0.97727 1.22417 0.96500 0.93497 0.96136 1.62010 1.51678 1.02947 1.08721 1.22910 0.99805 0.98566 0.87912 1.20871 0.93179 0.86108 0.94538 1.44063 1.78960 1.05671 1.03208 1.19134 1.14094 0.86091 1.18790 0.91911 1.25163 0.95551 0.97802 1.01132 1.69961 1.17841 1.37820 1.29388 0.86328 0.77552 0.84390 0.78189 1.21130 1.21607 1.20907 1.20991 0.96111 0.92064 0.88660 1.22760 0.96929 0.94682 0.94972 1.17004 0.86249 0.81609 0.76938 1.90828 1.12865 1.86360 1.49294 1.21378 0.89209 0.94220 1.09744 1.73919 1.15919 0.98607 1.20111 1.42752 1.08666 1.03101 1.53449 0.71337 1.22206 0.86740 0.98126 1.07893 1.20872 0.97294 0.91080 1.07606 1.20426 0.93176 0.92737 1.02377 1.22446 0.93837 0.97271 1.01819 1.20642 0.96126 0.88050 1.02720 0.92633 0.89297 0.91303 0.89941 0.88819 0.90776 0.95658 0.92201 0.95841 0.89249 0.95490 0.93553 0.92723 0.95573 0.95571 0.91659 0.90059 0.90009 0.90459 0.89673 0.90427 0.89518 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.81 9.45 59.85 0.57 1.37 16 2 N -0.60 -8.00 2.87 -182.74 -0.53 -8.52 16 3 C 0.11 1.64 4.59 -4.04 -0.02 1.62 16 4 C 0.04 0.72 5.59 -3.82 -0.02 0.69 16 5 N -0.53 -10.18 4.78 -234.32 -1.12 -11.30 16 6 C 0.04 0.78 5.58 -3.70 -0.02 0.76 16 7 C 0.18 4.54 5.36 -3.61 -0.02 4.52 16 8 N -0.60 -15.65 3.03 -172.02 -0.52 -16.17 16 9 C -0.25 -7.09 9.63 -15.06 -0.14 -7.23 16 10 H 0.06 1.73 7.85 -52.48 -0.41 1.31 16 11 C 0.00 0.06 5.08 -17.43 -0.09 -0.03 16 12 N -0.91 -26.91 10.99 55.49 0.61 -26.30 16 13 Si 0.91 22.10 29.57 -169.99 -5.03 17.08 16 14 H -0.28 -6.86 7.11 56.52 0.40 -6.46 16 15 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 16 H -0.28 -6.81 7.11 56.52 0.40 -6.41 16 17 C 0.15 3.28 6.69 -3.60 -0.02 3.26 16 18 C 0.04 0.67 5.04 -3.71 -0.02 0.65 16 19 C 0.60 8.86 7.67 -12.39 -0.09 8.77 16 20 O -0.52 -9.32 16.56 5.31 0.09 -9.23 16 21 C 0.01 0.18 6.84 -82.80 -0.57 -0.38 16 22 N -0.25 -2.52 8.82 33.40 0.29 -2.23 16 23 N -0.37 -2.62 6.84 33.61 0.23 -2.39 16 24 H 0.44 1.41 8.96 -190.44 -1.71 -0.30 16 25 C -0.02 -0.18 8.12 -81.95 -0.67 -0.84 16 26 C -0.16 -1.71 6.82 -104.44 -0.71 -2.42 16 27 C -0.05 -0.42 6.78 -26.97 -0.18 -0.61 16 28 C -0.12 -0.57 7.13 -25.16 -0.18 -0.75 16 29 C -0.04 -0.16 6.78 -26.84 -0.18 -0.34 16 30 H 0.06 0.51 8.14 -51.93 -0.42 0.09 16 31 H 0.09 0.89 5.66 -51.93 -0.29 0.60 16 32 H 0.07 0.64 8.03 -51.93 -0.42 0.23 16 33 H 0.08 1.06 6.11 -51.93 -0.32 0.74 16 34 H 0.09 1.49 7.50 -51.93 -0.39 1.10 16 35 H 0.07 1.31 8.14 -51.93 -0.42 0.88 16 36 H 0.03 0.40 8.08 -51.93 -0.42 -0.02 16 37 H 0.06 1.17 8.11 -51.93 -0.42 0.75 16 38 H 0.02 0.50 8.14 -51.93 -0.42 0.08 16 39 H 0.09 2.48 6.17 -51.93 -0.32 2.16 16 40 H 0.03 0.74 8.14 -51.93 -0.42 0.31 16 41 H 0.25 7.31 8.31 -40.82 -0.34 6.97 16 42 H 0.05 1.15 7.95 -51.93 -0.41 0.73 16 43 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 44 H 0.03 0.50 8.14 -51.93 -0.42 0.07 16 45 H 0.07 1.03 5.73 -51.93 -0.30 0.73 16 46 H 0.08 0.78 8.14 -51.93 -0.42 0.36 16 47 H 0.08 0.70 8.14 -51.93 -0.42 0.28 16 48 H 0.08 0.35 8.14 -51.93 -0.42 -0.07 16 49 H 0.08 0.28 8.14 -51.93 -0.42 -0.15 16 50 H 0.08 0.21 8.14 -51.93 -0.42 -0.21 16 51 H 0.09 0.29 8.14 -51.93 -0.42 -0.14 16 LS Contribution 398.11 15.07 6.00 6.00 Total: -1.00 -34.98 398.11 -11.96 -46.94 By element: Atomic # 1 Polarization: 6.73 SS G_CDS: -9.62 Total: -2.89 kcal Atomic # 6 Polarization: 11.40 SS G_CDS: -2.37 Total: 9.03 kcal Atomic # 7 Polarization: -65.89 SS G_CDS: -1.03 Total: -66.92 kcal Atomic # 8 Polarization: -9.32 SS G_CDS: 0.09 Total: -9.23 kcal Atomic # 14 Polarization: 22.10 SS G_CDS: -5.03 Total: 17.08 kcal Total LS contribution 6.00 Total: 6.00 kcal Total: -34.98 -11.96 -46.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267573346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.278 kcal (2) G-P(sol) polarization free energy of solvation -34.975 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 113.303 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.960 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -46.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 101.342 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.25 seconds