Wall clock time and date at job start Wed Apr 1 2020 04:46:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.46500 * 119.99997 * 2 1 4 4 C 1.53001 * 109.46930 * 89.99932 * 3 2 1 5 5 N 1.46897 * 109.46844 * 179.97438 * 4 3 2 6 6 C 1.46904 * 110.99800 * 170.00379 * 5 4 3 7 7 C 1.53237 * 109.34066 * 172.74901 * 6 5 4 8 8 N 1.47074 * 108.52291 * 53.82578 * 7 6 5 9 9 C 1.36937 * 120.88214 * 128.79710 * 8 7 6 10 10 H 1.08006 * 119.99943 * 210.26145 * 9 8 7 11 11 C 1.38814 * 120.00371 * 30.25675 * 9 8 7 12 12 N 1.31620 * 119.99573 * 9.93733 * 11 9 8 13 13 Si 1.86796 * 120.00286 * 189.93547 * 11 9 8 14 14 H 1.48490 * 109.47092 * 60.00089 * 13 11 9 15 15 H 1.48497 * 109.47043 * 180.02562 * 13 11 9 16 16 H 1.48497 * 109.47220 * 300.00150 * 13 11 9 17 17 C 1.47081 * 118.23813 * 308.81528 * 8 7 6 18 18 C 1.46893 * 111.00295 * 45.69999 * 5 4 3 19 19 C 1.34782 * 119.99919 * 180.02562 * 2 1 3 20 20 O 1.21567 * 120.00033 * 185.39101 * 19 2 1 21 21 C 1.47710 * 119.99871 * 5.38880 * 19 2 1 22 22 N 1.31842 * 126.57413 * 356.23099 * 21 19 2 23 23 N 1.28463 * 110.06229 * 179.88303 * 22 21 19 24 24 H 0.96999 * 124.88456 * 180.18298 * 23 22 21 25 25 C 1.35259 * 110.22810 * 0.40297 * 23 22 21 26 26 C 1.35049 * 107.07330 * 359.74174 * 25 23 22 27 27 C 1.50952 * 110.52444 * 180.02562 * 26 25 23 28 28 C 1.54510 * 104.96401 * 16.77577 * 27 26 25 29 29 C 1.51233 * 142.76822 * 179.72523 * 25 23 22 30 30 H 1.09004 * 109.47083 * 95.22157 * 1 2 3 31 31 H 1.09000 * 109.47520 * 215.22206 * 1 2 3 32 32 H 1.08997 * 109.47225 * 335.22299 * 1 2 3 33 33 H 1.08995 * 109.47344 * 330.00222 * 3 2 1 34 34 H 1.09004 * 109.46788 * 209.99952 * 3 2 1 35 35 H 1.09004 * 109.46687 * 60.00184 * 4 3 2 36 36 H 1.08996 * 109.47517 * 300.00008 * 4 3 2 37 37 H 1.08998 * 109.49624 * 52.78094 * 6 5 4 38 38 H 1.09005 * 109.48801 * 292.70389 * 6 5 4 39 39 H 1.08996 * 109.63139 * 173.53929 * 7 6 5 40 40 H 1.09002 * 109.62759 * 293.92331 * 7 6 5 41 41 H 0.97000 * 120.00136 * 180.02562 * 12 11 9 42 42 H 1.09003 * 109.62875 * 170.89019 * 17 8 7 43 43 H 1.08997 * 109.63130 * 291.47871 * 17 8 7 44 44 H 1.09006 * 109.49353 * 67.28683 * 18 5 4 45 45 H 1.08998 * 109.51495 * 307.22721 * 18 5 4 46 46 H 1.09001 * 110.33831 * 135.64736 * 27 26 25 47 47 H 1.08992 * 110.34259 * 257.79747 * 27 26 25 48 48 H 1.09002 * 110.93135 * 92.68768 * 28 27 26 49 49 H 1.09004 * 110.92888 * 216.31287 * 28 27 26 50 50 H 1.09003 * 110.32535 * 44.29934 * 29 25 23 51 51 H 1.08999 * 110.41120 * 282.12400 * 29 25 23 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.4525 1.7104 1.4425 5 7 3.1875 2.9822 1.4425 6 6 3.2446 3.5572 2.7931 7 6 4.1672 4.7807 2.7852 8 7 3.7105 5.7036 1.7352 9 6 3.4889 7.0267 2.0100 10 1 2.7393 7.5746 1.4583 11 6 4.2276 7.6637 2.9977 12 7 5.2678 7.0608 3.5333 13 14 3.7454 9.3763 3.5665 14 1 2.3655 9.3458 4.1141 15 1 4.6870 9.8311 4.6209 16 1 3.8008 10.3139 2.4163 17 6 3.4976 5.1677 0.3821 18 6 2.6013 3.9291 0.4846 19 6 2.1389 -1.1673 -0.0005 20 8 3.3505 -1.1697 0.0984 21 6 1.4052 -2.4436 -0.1212 22 7 0.0964 -2.5962 -0.1655 23 7 -0.1986 -3.8416 -0.2755 24 1 -1.1001 -4.1956 -0.3291 25 6 0.9287 -4.5887 -0.3009 26 6 1.9716 -3.7362 -0.2053 27 6 3.2776 -4.4929 -0.2271 28 6 2.9192 -5.8913 -0.7779 29 6 1.4271 -6.0134 -0.3963 30 1 -0.3633 -0.0935 -1.0234 31 1 -0.3634 -0.8395 0.5927 32 1 -0.3633 0.9330 0.4307 33 1 1.6085 2.0284 -0.5138 34 1 3.1499 1.1383 -0.5139 35 1 3.0416 0.9507 1.9563 36 1 1.5001 1.8407 1.9564 37 1 3.6325 2.8135 3.4891 38 1 2.2438 3.8585 3.1027 39 1 4.1241 5.2781 3.7541 40 1 5.1906 4.4662 2.5805 41 1 5.7838 7.5057 4.2237 42 1 3.0116 5.9211 -0.2379 43 1 4.4560 4.8907 -0.0570 44 1 1.6094 4.2251 0.8263 45 1 2.5224 3.4552 -0.4938 46 1 3.9914 -3.9979 -0.8854 47 1 3.6854 -4.5739 0.7804 48 1 3.0490 -5.9288 -1.8595 49 1 3.5110 -6.6656 -0.2895 50 1 0.8818 -6.5543 -1.1697 51 1 1.3217 -6.5181 0.5640 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001267573346.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:46:33 Heat of formation + Delta-G solvation = 77.174733 kcal Electronic energy + Delta-G solvation = -30624.664396 eV Core-core repulsion = 26561.456914 eV Total energy + Delta-G solvation = -4063.207481 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -43.92645 -40.85247 -39.66765 -37.77835 -37.06643 -35.94174 -33.52843 -32.95203 -31.85795 -30.45000 -29.73748 -28.54519 -28.08528 -27.44636 -25.58793 -24.60980 -24.04006 -22.75151 -22.32267 -21.05116 -20.79088 -20.01601 -18.76408 -18.61667 -17.76483 -17.50247 -17.26871 -16.91980 -16.37687 -16.01581 -15.93772 -15.51597 -15.36349 -15.21576 -15.12710 -14.88243 -14.51357 -14.29632 -14.11754 -13.99862 -13.78245 -13.63684 -13.19196 -13.12570 -13.04652 -12.90313 -12.82471 -12.60236 -12.37727 -12.16900 -12.06294 -12.03389 -11.97770 -11.91522 -11.60704 -11.53281 -11.43841 -11.20878 -10.59147 -10.40421 -9.79648 -9.57963 -9.27909 -8.63072 -7.86037 -5.37386 0.42777 1.05435 1.46690 1.49318 1.56263 1.63128 1.94750 2.24804 2.50659 3.00843 3.15710 3.30373 3.53162 3.67452 3.70345 3.84878 3.93296 4.08935 4.21160 4.24135 4.24507 4.31646 4.34944 4.39680 4.55559 4.56911 4.64276 4.68558 4.70493 4.78611 4.83209 4.84989 4.89436 4.90412 4.98732 5.00646 5.02629 5.08968 5.18261 5.19303 5.36010 5.36824 5.37823 5.46937 5.60920 5.68697 6.08496 6.14194 6.22116 6.28673 6.39877 6.77276 7.06104 7.14003 7.82868 8.39709 9.20370 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.030635 B = 0.001854 C = 0.001803 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 913.774290 B =15098.740430 C =15521.816496 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.080 3.920 2 N -0.603 5.603 3 C 0.123 3.877 4 C 0.055 3.945 5 N -0.542 5.542 6 C 0.053 3.947 7 C 0.188 3.812 8 N -0.614 5.614 9 C -0.264 4.264 10 H 0.069 0.931 11 C -0.054 4.054 12 N -0.939 5.939 13 Si 0.975 3.025 14 H -0.276 1.276 15 H -0.294 1.294 16 H -0.274 1.274 17 C 0.143 3.857 18 C 0.048 3.952 19 C 0.590 3.410 20 O -0.566 6.566 21 C -0.020 4.020 22 N -0.249 5.249 23 N -0.348 5.348 24 H 0.462 0.538 25 C -0.002 4.002 26 C -0.199 4.199 27 C -0.055 4.055 28 C -0.107 4.107 29 C -0.031 4.031 30 H 0.068 0.932 31 H 0.091 0.909 32 H 0.081 0.919 33 H 0.105 0.895 34 H 0.074 0.926 35 H 0.056 0.944 36 H 0.037 0.963 37 H 0.071 0.929 38 H 0.024 0.976 39 H 0.060 0.940 40 H -0.005 1.005 41 H 0.250 0.750 42 H 0.066 0.934 43 H 0.013 0.987 44 H 0.030 0.970 45 H 0.100 0.900 46 H 0.058 0.942 47 H 0.074 0.926 48 H 0.082 0.918 49 H 0.106 0.894 50 H 0.106 0.894 51 H 0.106 0.894 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.719 -30.728 -10.099 35.962 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.063 4.063 2 N -0.335 5.335 3 C 0.000 4.000 4 C -0.074 4.074 5 N -0.268 5.268 6 C -0.076 4.076 7 C 0.062 3.938 8 N -0.338 5.338 9 C -0.394 4.394 10 H 0.087 0.913 11 C -0.249 4.249 12 N -0.585 5.585 13 Si 0.803 3.197 14 H -0.202 1.202 15 H -0.220 1.220 16 H -0.200 1.200 17 C 0.017 3.983 18 C -0.080 4.080 19 C 0.377 3.623 20 O -0.443 6.443 21 C -0.179 4.179 22 N -0.086 5.086 23 N -0.064 5.064 24 H 0.310 0.690 25 C -0.130 4.130 26 C -0.209 4.209 27 C -0.094 4.094 28 C -0.145 4.145 29 C -0.070 4.070 30 H 0.086 0.914 31 H 0.109 0.891 32 H 0.100 0.900 33 H 0.123 0.877 34 H 0.092 0.908 35 H 0.075 0.925 36 H 0.055 0.945 37 H 0.089 0.911 38 H 0.042 0.958 39 H 0.078 0.922 40 H 0.013 0.987 41 H 0.059 0.941 42 H 0.084 0.916 43 H 0.031 0.969 44 H 0.049 0.951 45 H 0.118 0.882 46 H 0.077 0.923 47 H 0.092 0.908 48 H 0.100 0.900 49 H 0.124 0.876 50 H 0.124 0.876 51 H 0.124 0.876 Dipole moment (debyes) X Y Z Total from point charges -15.493 -30.089 -10.070 35.310 hybrid contribution -0.248 1.078 0.924 1.442 sum -15.741 -29.010 -9.145 34.250 Atomic orbital electron populations 1.22184 0.76585 1.04159 1.03323 1.47796 1.08742 1.04863 1.72062 1.21591 0.97946 0.84356 0.96113 1.22303 0.96156 0.91274 0.97641 1.61898 1.53177 1.04043 1.07698 1.22574 0.98538 0.96987 0.89516 1.20584 0.92638 0.87497 0.93099 1.44345 1.79024 1.05518 1.04941 1.19516 1.14052 0.87084 1.18795 0.91289 1.25999 0.95622 1.01779 1.01497 1.70153 1.19055 1.39391 1.29908 0.85232 0.77227 0.79693 0.77590 1.20219 1.22035 1.19970 1.21165 0.96415 0.93923 0.86800 1.22633 0.95771 0.93150 0.96495 1.17433 0.85981 0.82774 0.76109 1.90788 1.14826 1.87153 1.51529 1.21190 0.90309 0.93840 1.12518 1.73816 1.14661 1.00041 1.20073 1.42856 1.09741 1.02319 1.51437 0.68986 1.22723 0.85747 0.99267 1.05263 1.21271 0.99256 0.91202 1.09209 1.20517 0.92256 0.94858 1.01731 1.22467 0.94719 0.95107 1.02186 1.20825 0.95411 0.86002 1.04749 0.91367 0.89079 0.89984 0.87671 0.90775 0.92516 0.94450 0.91087 0.95786 0.92178 0.98713 0.94056 0.91607 0.96874 0.95125 0.88210 0.92319 0.90804 0.89950 0.87552 0.87554 0.87568 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 1.46 9.45 127.77 1.21 2.67 16 2 N -0.60 -15.55 2.87 -850.34 -2.44 -17.99 16 3 C 0.12 3.38 4.59 86.38 0.40 3.78 16 4 C 0.06 1.76 5.59 86.30 0.48 2.24 16 5 N -0.54 -20.70 4.78 -895.26 -4.28 -24.98 16 6 C 0.05 2.26 5.58 86.38 0.48 2.74 16 7 C 0.19 9.89 5.36 86.35 0.46 10.35 16 8 N -0.61 -32.80 3.03 -698.14 -2.12 -34.92 16 9 C -0.26 -15.03 9.63 84.03 0.81 -14.22 16 10 H 0.07 3.76 7.85 -2.91 -0.02 3.74 16 11 C -0.05 -3.11 5.08 84.86 0.43 -2.68 16 12 N -0.94 -57.62 10.99 21.65 0.24 -57.39 16 13 Si 0.98 45.89 29.57 68.60 2.03 47.92 16 14 H -0.28 -12.53 7.11 99.48 0.71 -11.82 16 15 H -0.29 -13.92 7.11 99.48 0.71 -13.21 16 16 H -0.27 -12.41 7.11 99.48 0.71 -11.70 16 17 C 0.14 6.28 6.69 86.35 0.58 6.86 16 18 C 0.05 1.72 5.04 86.38 0.44 2.16 16 19 C 0.59 17.98 7.67 86.75 0.67 18.64 16 20 O -0.57 -21.51 16.56 -3.93 -0.07 -21.57 16 21 C -0.02 -0.51 6.84 42.42 0.29 -0.22 16 22 N -0.25 -4.64 8.82 -48.24 -0.43 -5.07 16 23 N -0.35 -4.07 6.84 -47.56 -0.33 -4.39 16 24 H 0.46 1.37 8.96 -220.00 -1.97 -0.60 16 25 C 0.00 -0.03 8.12 41.47 0.34 0.31 16 26 C -0.20 -4.24 6.82 -19.75 -0.13 -4.38 16 27 C -0.06 -0.97 6.78 30.44 0.21 -0.77 16 28 C -0.11 -0.82 7.13 31.61 0.23 -0.59 16 29 C -0.03 -0.16 6.78 30.52 0.21 0.05 16 30 H 0.07 1.10 8.14 -2.39 -0.02 1.08 16 31 H 0.09 1.67 5.66 -2.39 -0.01 1.65 16 32 H 0.08 1.30 8.03 -2.39 -0.02 1.28 16 33 H 0.11 2.41 6.11 -2.39 -0.01 2.40 16 34 H 0.07 2.37 7.50 -2.39 -0.02 2.36 16 35 H 0.06 2.02 8.14 -2.38 -0.02 2.01 16 36 H 0.04 1.12 8.08 -2.39 -0.02 1.10 16 37 H 0.07 2.82 8.11 -2.39 -0.02 2.80 16 38 H 0.02 1.02 8.14 -2.38 -0.02 1.00 16 39 H 0.06 3.49 6.17 -2.39 -0.01 3.47 16 40 H -0.01 -0.30 8.14 -2.39 -0.02 -0.32 16 41 H 0.25 14.86 8.31 -92.71 -0.77 14.09 16 42 H 0.07 2.71 7.95 -2.39 -0.02 2.69 16 43 H 0.01 0.61 8.14 -2.39 -0.02 0.60 16 44 H 0.03 1.09 8.14 -2.38 -0.02 1.07 16 45 H 0.10 2.88 5.73 -2.39 -0.01 2.86 16 46 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 47 H 0.07 1.34 8.14 -2.39 -0.02 1.32 16 48 H 0.08 0.56 8.14 -2.39 -0.02 0.54 16 49 H 0.11 0.38 8.14 -2.38 -0.02 0.36 16 50 H 0.11 0.04 8.14 -2.39 -0.02 0.02 16 51 H 0.11 0.24 8.14 -2.39 -0.02 0.22 16 Total: -1.00 -79.90 398.11 -1.33 -81.23 By element: Atomic # 1 Polarization: 11.24 SS G_CDS: -1.03 Total: 10.21 kcal Atomic # 6 Polarization: 19.86 SS G_CDS: 7.08 Total: 26.94 kcal Atomic # 7 Polarization: -135.39 SS G_CDS: -9.35 Total: -144.74 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.07 Total: -21.57 kcal Atomic # 14 Polarization: 45.89 SS G_CDS: 2.03 Total: 47.92 kcal Total: -79.90 -1.33 -81.23 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001267573346.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 158.409 kcal (2) G-P(sol) polarization free energy of solvation -79.900 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 78.509 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -1.334 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -81.235 kcal (6) G-S(sol) free energy of system = (1) + (5) 77.175 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.18 seconds