Wall clock time and date at job start Wed Apr 1 2020 06:28:51 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31517 * 1 3 3 Si 1.86796 * 119.99740 * 2 1 4 4 H 1.48497 * 109.47317 * 269.99957 * 3 2 1 5 5 H 1.48504 * 109.47236 * 30.00126 * 3 2 1 6 6 H 1.48502 * 109.47181 * 149.99933 * 3 2 1 7 7 C 1.37878 * 120.00073 * 179.97438 * 2 1 3 8 8 H 1.07996 * 119.99696 * 179.97438 * 7 2 1 9 9 C 1.50704 * 119.99829 * 0.02562 * 7 2 1 10 10 C 1.53003 * 109.46741 * 179.97438 * 9 7 2 11 11 C 1.52998 * 109.47201 * 179.97438 * 10 9 7 12 12 N 1.46897 * 109.47343 * 180.02562 * 11 10 9 13 13 C 1.48220 * 111.00039 * 189.99795 * 12 11 10 14 14 C 1.52669 * 85.71736 * 223.27306 * 13 12 11 15 15 C 1.48220 * 111.00123 * 90.27998 * 12 11 10 16 16 C 1.52229 * 122.20226 * 150.22634 * 14 13 12 17 17 N 1.47314 * 87.61217 * 150.21701 * 16 14 13 18 18 C 1.34779 * 135.87288 * 153.97885 * 17 16 14 19 19 O 1.21285 * 119.99838 * 0.02562 * 18 17 16 20 20 C 1.50696 * 119.99547 * 180.02562 * 18 17 16 21 21 H 1.08998 * 109.51474 * 63.45420 * 20 18 17 22 22 C 1.53125 * 109.49457 * 303.38883 * 20 18 17 23 23 C 1.53395 * 108.84499 * 239.97375 * 22 20 18 24 24 C 1.53388 * 108.59859 * 59.00264 * 23 22 20 25 25 C 1.53144 * 108.82582 * 301.04523 * 24 23 22 26 26 N 1.46909 * 109.36772 * 359.97438 * 25 24 23 27 27 C 1.46944 * 111.06186 * 298.00849 * 26 25 24 28 28 C 1.53124 * 109.34838 * 61.96289 * 27 26 25 29 29 C 1.47314 * 88.24824 * 334.23824 * 17 16 14 30 30 H 0.96995 * 120.00346 * 0.02562 * 1 2 3 31 31 H 1.08996 * 109.47196 * 59.99754 * 9 7 2 32 32 H 1.09000 * 109.47214 * 299.99439 * 9 7 2 33 33 H 1.08996 * 109.47265 * 60.00056 * 10 9 7 34 34 H 1.09000 * 109.47021 * 299.99817 * 10 9 7 35 35 H 1.09004 * 109.46961 * 59.99619 * 11 10 9 36 36 H 1.09001 * 109.47184 * 300.00384 * 11 10 9 37 37 H 1.09009 * 113.83435 * 109.07179 * 13 12 11 38 38 H 1.09004 * 113.83309 * 337.47556 * 13 12 11 39 39 H 1.08999 * 113.83374 * 22.52265 * 15 12 11 40 40 H 1.09004 * 113.83178 * 250.92639 * 15 12 11 41 41 H 1.09000 * 113.53396 * 35.52600 * 16 14 13 42 42 H 1.09002 * 113.59011 * 264.91491 * 16 14 13 43 43 H 1.08995 * 109.57466 * 120.16530 * 22 20 18 44 44 H 1.08996 * 109.57165 * 359.78176 * 22 20 18 45 45 H 1.08996 * 110.76044 * 180.02562 * 23 22 20 46 46 H 1.09004 * 109.57634 * 181.24368 * 24 23 22 47 47 H 1.08998 * 109.57554 * 60.84867 * 24 23 22 48 48 H 1.08990 * 109.48841 * 119.96007 * 25 24 23 49 49 H 1.09004 * 109.48263 * 240.00026 * 25 24 23 50 50 H 1.08998 * 109.49342 * 181.92799 * 27 26 25 51 51 H 1.09002 * 109.48748 * 302.00443 * 27 26 25 52 52 H 1.09001 * 109.57409 * 119.86917 * 28 27 26 53 53 H 1.09004 * 109.57523 * 240.24883 * 28 27 26 54 54 H 1.09005 * 113.52706 * 140.44971 * 29 17 16 55 55 H 1.09005 * 113.52641 * 271.07383 * 29 17 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3152 0.0000 0.0000 3 14 2.2491 1.6177 0.0000 4 1 2.4966 2.0465 -1.4000 5 1 1.4465 2.6527 0.7001 6 1 3.5467 1.4402 0.7001 7 6 2.0046 -1.1941 0.0005 8 1 3.0845 -1.1940 0.0001 9 6 1.2510 -2.4992 0.0005 10 6 2.2454 -3.6621 0.0005 11 6 1.4804 -4.9871 0.0012 12 7 2.4351 -6.1036 0.0018 13 6 1.7445 -7.3931 -0.2378 14 6 2.6297 -7.9434 0.8777 15 6 2.7751 -6.5111 1.3858 16 6 2.1811 -9.0831 1.7817 17 7 3.5993 -9.4625 1.9037 18 6 4.3533 -10.1070 2.8162 19 8 3.8458 -10.5267 3.8347 20 6 5.8268 -10.3061 2.5709 21 1 6.3229 -9.3365 2.5273 22 6 6.0289 -11.0435 1.2442 23 6 6.7658 -12.3610 1.5169 24 6 5.9266 -13.1985 2.4901 25 6 5.7265 -12.4015 3.7824 26 7 6.4027 -11.1028 3.6635 27 6 7.8506 -11.2760 3.4820 28 6 8.1110 -12.0412 2.1816 29 6 3.8356 -8.8247 0.5970 30 1 -0.4850 0.8400 -0.0004 31 1 0.6247 -2.5571 -0.8896 32 1 0.6241 -2.5568 0.8903 33 1 2.8720 -3.6043 0.8905 34 1 2.8720 -3.6043 -0.8895 35 1 0.8534 -5.0451 -0.8886 36 1 0.8540 -5.0446 0.8914 37 1 1.9487 -7.8269 -1.2168 38 1 0.6830 -7.3769 0.0096 39 1 2.0258 -6.2277 2.1250 40 1 3.7904 -6.2506 1.6847 41 1 1.5732 -9.8300 1.2712 42 1 1.7381 -8.7477 2.7194 43 1 6.6222 -10.4261 0.5699 44 1 5.0597 -11.2540 0.7921 45 1 6.9268 -12.9125 0.5907 46 1 6.4467 -14.1303 2.7124 47 1 4.9573 -13.4170 2.0419 48 1 4.6614 -12.2431 3.9507 49 1 6.1486 -12.9561 4.6206 50 1 8.3303 -10.2985 3.4312 51 1 8.2577 -11.8380 4.3226 52 1 8.7129 -11.4278 1.5111 53 1 8.6386 -12.9690 2.4031 54 1 4.7741 -8.2725 0.5456 55 1 3.6948 -9.4988 -0.2480 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001277950179.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:51 Heat of formation + Delta-G solvation = 24.036383 kcal Electronic energy + Delta-G solvation = -31086.083103 eV Core-core repulsion = 27124.111714 eV Total energy + Delta-G solvation = -3961.971390 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.29 seconds Orbital eigenvalues (eV) -42.56558 -41.75959 -39.54952 -37.95220 -35.90521 -33.84613 -33.20718 -32.82107 -31.86286 -30.50743 -28.58636 -27.25073 -27.17115 -26.11199 -24.64679 -24.00439 -23.84651 -23.05396 -21.69385 -20.53579 -19.29555 -18.69988 -18.45437 -18.14950 -17.46818 -17.20943 -17.06447 -16.81528 -16.59855 -16.44367 -16.05593 -15.82712 -15.25409 -15.03802 -14.50969 -14.33942 -14.05796 -13.99763 -13.91332 -13.85832 -13.67821 -13.47880 -13.26210 -13.17209 -13.07823 -12.92932 -12.76563 -12.72365 -12.57490 -12.48010 -12.21713 -12.16310 -11.86136 -11.72636 -11.56830 -11.39811 -11.36981 -11.31789 -11.12156 -11.03283 -10.55064 -10.46022 -9.84120 -9.61548 -9.16398 -8.20145 -6.30918 1.39752 1.41141 1.52306 1.54740 1.69082 2.40818 2.80910 2.96977 3.12760 3.25791 3.37605 3.39452 3.61461 3.75568 3.80094 3.84897 4.04776 4.09357 4.19546 4.25637 4.29975 4.33069 4.34303 4.39121 4.41928 4.49274 4.55707 4.59346 4.59498 4.64520 4.71828 4.73113 4.74498 4.78845 4.81943 4.89800 4.93372 4.98020 5.01466 5.04025 5.08107 5.14806 5.17096 5.20881 5.27131 5.27346 5.28287 5.46579 5.53650 5.78161 5.86759 6.00527 6.07572 6.14456 6.28015 6.69083 6.85931 7.12293 7.38142 8.91530 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.020034 B = 0.001766 C = 0.001704 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1397.285115 B =15851.608380 C =16427.808530 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.933 5.933 2 C -0.002 4.002 3 Si 0.965 3.035 4 H -0.271 1.271 5 H -0.282 1.282 6 H -0.265 1.265 7 C -0.543 4.543 8 H 0.057 0.943 9 C 0.024 3.976 10 C -0.084 4.084 11 C 0.034 3.966 12 N -0.487 5.487 13 C 0.029 3.971 14 C -0.116 4.116 15 C 0.028 3.972 16 C 0.115 3.885 17 N -0.647 5.647 18 C 0.543 3.457 19 O -0.570 6.570 20 C 0.076 3.924 21 H 0.114 0.886 22 C -0.134 4.134 23 C -0.088 4.088 24 C -0.146 4.146 25 C 0.039 3.961 26 N -0.534 5.534 27 C 0.051 3.949 28 C -0.145 4.145 29 C 0.138 3.862 30 H 0.263 0.737 31 H -0.007 1.007 32 H -0.011 1.011 33 H 0.041 0.959 34 H 0.051 0.949 35 H 0.070 0.930 36 H 0.036 0.964 37 H 0.114 0.886 38 H 0.082 0.918 39 H 0.068 0.932 40 H 0.085 0.915 41 H 0.110 0.890 42 H 0.064 0.936 43 H 0.096 0.904 44 H 0.068 0.932 45 H 0.095 0.905 46 H 0.075 0.925 47 H 0.055 0.945 48 H 0.075 0.925 49 H 0.073 0.927 50 H 0.082 0.918 51 H 0.081 0.919 52 H 0.079 0.921 53 H 0.074 0.926 54 H 0.092 0.908 55 H 0.120 0.880 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 14.465 -30.461 0.182 33.722 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.573 5.573 2 C -0.200 4.200 3 Si 0.789 3.211 4 H -0.196 1.196 5 H -0.207 1.207 6 H -0.189 1.189 7 C -0.581 4.581 8 H 0.076 0.924 9 C -0.013 4.013 10 C -0.123 4.123 11 C -0.094 4.094 12 N -0.209 5.209 13 C -0.100 4.100 14 C -0.117 4.117 15 C -0.101 4.101 16 C -0.008 4.008 17 N -0.382 5.382 18 C 0.334 3.666 19 O -0.449 6.449 20 C -0.036 4.036 21 H 0.131 0.869 22 C -0.173 4.173 23 C -0.108 4.108 24 C -0.186 4.186 25 C -0.089 4.089 26 N -0.255 5.255 27 C -0.076 4.076 28 C -0.184 4.184 29 C 0.017 3.983 30 H 0.072 0.928 31 H 0.012 0.988 32 H 0.007 0.993 33 H 0.060 0.940 34 H 0.070 0.930 35 H 0.088 0.912 36 H 0.054 0.946 37 H 0.132 0.868 38 H 0.100 0.900 39 H 0.086 0.914 40 H 0.104 0.896 41 H 0.128 0.872 42 H 0.082 0.918 43 H 0.115 0.885 44 H 0.087 0.913 45 H 0.113 0.887 46 H 0.094 0.906 47 H 0.073 0.927 48 H 0.093 0.907 49 H 0.092 0.908 50 H 0.100 0.900 51 H 0.100 0.900 52 H 0.098 0.902 53 H 0.093 0.907 54 H 0.110 0.890 55 H 0.137 0.863 Dipole moment (debyes) X Y Z Total from point charges 14.630 -30.183 0.919 33.554 hybrid contribution -0.839 0.654 0.200 1.083 sum 13.791 -29.529 1.119 32.610 Atomic orbital electron populations 1.70091 1.07727 1.27736 1.51754 1.25991 0.95819 1.03367 0.94784 0.85454 0.78630 0.78446 0.78567 1.19617 1.20711 1.18885 1.21700 0.93479 0.92505 1.50396 0.92428 1.18997 0.94457 0.93184 0.94700 1.21260 0.97782 0.92940 1.00274 1.22557 0.94223 0.92030 1.00604 1.68560 1.31783 1.02235 1.18324 1.23748 0.97250 0.89221 0.99732 1.22797 0.98658 0.93010 0.97271 1.23648 1.02425 0.92505 0.91515 1.22924 0.83859 0.94866 0.99106 1.49710 1.11259 1.56287 1.20946 1.20484 0.88891 0.75680 0.81528 1.90618 1.75017 1.50752 1.28561 1.21589 0.90405 0.99750 0.91860 0.86865 1.22252 1.01903 0.97285 0.95866 1.21215 0.95028 0.95437 0.99075 1.22256 1.00169 0.99443 0.96684 1.22413 1.00754 0.88454 0.97271 1.62175 1.04353 1.16976 1.41963 1.22315 0.86365 1.01287 0.97660 1.22261 0.96736 1.01631 0.97742 1.22761 0.98316 0.92254 0.84996 0.92787 0.98839 0.99269 0.94024 0.93048 0.91172 0.94554 0.86759 0.90030 0.91410 0.89646 0.87245 0.91761 0.88547 0.91304 0.88688 0.90613 0.92656 0.90686 0.90836 0.89950 0.90035 0.90188 0.90714 0.88959 0.86254 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -57.19 13.29 21.45 0.28 -56.90 16 2 C 0.00 -0.12 5.46 84.65 0.46 0.34 16 3 Si 0.96 44.72 29.54 68.60 2.03 46.75 16 4 H -0.27 -12.07 7.11 99.48 0.71 -11.36 16 5 H -0.28 -12.74 7.11 99.48 0.71 -12.03 16 6 H -0.26 -11.77 7.11 99.48 0.71 -11.06 16 7 C -0.54 -31.45 9.11 25.60 0.23 -31.21 16 8 H 0.06 3.22 7.74 -2.91 -0.02 3.20 16 9 C 0.02 1.29 4.97 29.85 0.15 1.44 16 10 C -0.08 -3.52 5.46 30.59 0.17 -3.35 16 11 C 0.03 1.12 4.80 86.30 0.41 1.53 16 12 N -0.49 -12.31 6.15 -930.50 -5.73 -18.03 16 13 C 0.03 0.50 7.78 85.94 0.67 1.17 16 14 C -0.12 -1.86 1.46 -52.90 -0.08 -1.94 16 15 C 0.03 0.64 7.78 85.94 0.67 1.30 16 16 C 0.12 1.92 8.44 83.67 0.71 2.63 16 17 N -0.65 -11.65 3.46 -858.58 -2.97 -14.62 16 18 C 0.54 12.40 6.86 87.66 0.60 13.00 16 19 O -0.57 -17.95 14.61 -3.05 -0.04 -18.00 16 20 C 0.08 1.29 2.73 44.20 0.12 1.41 16 21 H 0.11 1.77 8.14 -2.39 -0.02 1.75 16 22 C -0.13 -1.50 4.68 30.77 0.14 -1.36 16 23 C -0.09 -0.93 3.45 -10.39 -0.04 -0.97 16 24 C -0.15 -2.01 5.75 30.77 0.18 -1.83 16 25 C 0.04 0.75 5.65 86.35 0.49 1.24 16 26 N -0.53 -10.08 4.82 -874.27 -4.22 -14.30 16 27 C 0.05 0.66 6.10 86.34 0.53 1.18 16 28 C -0.14 -1.32 5.75 30.78 0.18 -1.14 16 29 C 0.14 1.70 7.08 83.59 0.59 2.29 16 30 H 0.26 15.13 8.31 -92.71 -0.77 14.36 16 31 H -0.01 -0.39 8.14 -2.39 -0.02 -0.40 16 32 H -0.01 -0.64 8.14 -2.39 -0.02 -0.65 16 33 H 0.04 1.74 8.14 -2.39 -0.02 1.72 16 34 H 0.05 2.15 8.14 -2.39 -0.02 2.13 16 35 H 0.07 2.25 8.08 -2.38 -0.02 2.23 16 36 H 0.04 1.19 7.39 -2.39 -0.02 1.18 16 37 H 0.11 1.49 8.14 -2.38 -0.02 1.47 16 38 H 0.08 1.35 7.92 -2.38 -0.02 1.33 16 39 H 0.07 1.68 7.48 -2.39 -0.02 1.66 16 40 H 0.09 2.01 8.14 -2.38 -0.02 2.00 16 41 H 0.11 1.37 8.14 -2.39 -0.02 1.35 16 42 H 0.06 1.30 8.14 -2.39 -0.02 1.28 16 43 H 0.10 0.74 8.14 -2.39 -0.02 0.72 16 44 H 0.07 0.82 6.94 -2.39 -0.02 0.80 16 45 H 0.09 0.78 8.14 -2.39 -0.02 0.76 16 46 H 0.08 0.87 8.14 -2.38 -0.02 0.85 16 47 H 0.05 0.83 8.14 -2.39 -0.02 0.81 16 48 H 0.07 1.92 5.27 -2.39 -0.01 1.91 16 49 H 0.07 1.32 8.14 -2.39 -0.02 1.30 16 50 H 0.08 0.95 8.14 -2.39 -0.02 0.93 16 51 H 0.08 0.99 8.14 -2.39 -0.02 0.97 16 52 H 0.08 0.57 8.14 -2.39 -0.02 0.55 16 53 H 0.07 0.59 8.14 -2.39 -0.02 0.57 16 54 H 0.09 1.07 8.14 -2.38 -0.02 1.05 16 55 H 0.12 0.86 8.14 -2.38 -0.02 0.84 16 Total: -1.00 -73.52 418.48 -3.63 -77.15 By element: Atomic # 1 Polarization: 11.39 SS G_CDS: 0.84 Total: 12.22 kcal Atomic # 6 Polarization: -20.45 SS G_CDS: 6.18 Total: -14.27 kcal Atomic # 7 Polarization: -91.23 SS G_CDS: -12.63 Total: -103.86 kcal Atomic # 8 Polarization: -17.95 SS G_CDS: -0.04 Total: -18.00 kcal Atomic # 14 Polarization: 44.72 SS G_CDS: 2.03 Total: 46.75 kcal Total: -73.52 -3.63 -77.15 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001277950179.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 101.189 kcal (2) G-P(sol) polarization free energy of solvation -73.524 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 27.666 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -3.629 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -77.153 kcal (6) G-S(sol) free energy of system = (1) + (5) 24.036 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.29 seconds