Wall clock time and date at job start Wed Apr 1 2020 05:14:40 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50696 * 1 3 3 N 1.30295 * 126.35225 * 2 1 4 4 N 1.28530 * 110.05743 * 179.97438 * 3 2 1 5 5 C 1.31218 * 109.85770 * 0.02562 * 4 3 2 6 6 N 1.38581 * 126.47093 * 180.02562 * 5 4 3 7 7 C 1.46906 * 110.99796 * 241.80627 * 6 5 4 8 8 C 1.46901 * 110.99924 * 5.75883 * 6 5 4 9 9 H 1.08997 * 109.46962 * 55.00506 * 8 6 5 10 10 C 1.52999 * 109.47440 * 294.99963 * 8 6 5 11 11 C 1.50697 * 109.46944 * 175.00170 * 8 6 5 12 12 H 1.07999 * 120.00286 * 359.97438 * 11 8 6 13 13 C 1.37876 * 120.00014 * 180.02562 * 11 8 6 14 14 N 1.31508 * 120.00055 * 0.02562 * 13 11 8 15 15 Si 1.86800 * 119.99877 * 179.97438 * 13 11 8 16 16 H 1.48495 * 109.47531 * 60.00378 * 15 13 11 17 17 H 1.48504 * 109.46993 * 179.97438 * 15 13 11 18 18 H 1.48500 * 109.47402 * 299.99862 * 15 13 11 19 19 N 1.36452 * 107.05625 * 359.97438 * 5 4 3 20 20 C 1.46502 * 127.13814 * 180.02562 * 19 5 4 21 21 C 1.50700 * 109.47003 * 263.90043 * 20 19 5 22 22 N 1.30833 * 125.96158 * 4.85333 * 21 20 19 23 23 C 1.33241 * 109.82974 * 179.86900 * 22 21 20 24 24 N 1.30718 * 108.94199 * 0.40074 * 23 22 21 25 25 N 1.34429 * 125.96076 * 185.16315 * 21 20 19 26 26 C 1.46501 * 126.82000 * 0.02562 * 25 21 20 27 27 C 1.53003 * 109.47227 * 64.78947 * 26 25 21 28 28 C 1.53005 * 109.46841 * 184.78340 * 26 25 21 29 29 C 1.52998 * 109.47246 * 304.78376 * 26 25 21 30 30 H 1.08998 * 109.47329 * 90.02056 * 1 2 3 31 31 H 1.09001 * 109.47296 * 210.02697 * 1 2 3 32 32 H 1.09002 * 109.46873 * 330.02866 * 1 2 3 33 33 H 1.09005 * 109.46962 * 64.35667 * 7 6 5 34 34 H 1.08999 * 109.47054 * 184.35477 * 7 6 5 35 35 H 1.08995 * 109.47227 * 304.35585 * 7 6 5 36 36 H 1.09004 * 109.46655 * 60.00106 * 10 8 6 37 37 H 1.08991 * 109.47298 * 179.97438 * 10 8 6 38 38 H 1.09001 * 109.47074 * 300.00500 * 10 8 6 39 39 H 0.97002 * 120.00268 * 180.02562 * 14 13 11 40 40 H 1.08994 * 109.46698 * 23.89943 * 20 19 5 41 41 H 1.09002 * 109.46884 * 143.89943 * 20 19 5 42 42 H 1.07996 * 125.53053 * 180.12989 * 23 22 21 43 43 H 1.08994 * 109.47018 * 54.79220 * 27 26 25 44 44 H 1.09003 * 109.46970 * 174.79438 * 27 26 25 45 45 H 1.09000 * 109.46512 * 294.79233 * 27 26 25 46 46 H 1.09002 * 109.46529 * 60.00112 * 28 26 25 47 47 H 1.08997 * 109.47292 * 179.97438 * 28 26 25 48 48 H 1.08998 * 109.47512 * 300.00270 * 28 26 25 49 49 H 1.09002 * 109.46965 * 65.54499 * 29 26 25 50 50 H 1.08998 * 109.47069 * 185.54823 * 29 26 25 51 51 H 1.08999 * 109.46943 * 305.55085 * 29 26 25 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5070 0.0000 0.0000 3 7 2.2793 1.0494 0.0000 4 7 3.5129 0.6887 0.0005 5 6 3.5945 -0.6209 0.0004 6 7 4.7579 -1.3738 0.0013 7 6 4.8490 -2.2036 -1.2076 8 6 5.9411 -0.5142 0.1402 9 1 5.8393 0.1026 1.0330 10 6 6.0647 0.3863 -1.0905 11 6 7.1740 -1.3724 0.2605 12 1 7.0874 -2.4486 0.2366 13 6 8.4127 -0.7835 0.4021 14 7 8.5181 0.5269 0.4327 15 14 9.9409 -1.8473 0.5519 16 1 10.0803 -2.6878 -0.6643 17 1 11.1370 -0.9784 0.6922 18 1 9.8205 -2.7213 1.7465 19 7 2.3174 -1.1014 0.0002 20 6 1.9008 -2.5060 0.0006 21 6 1.6135 -2.9450 -1.4122 22 7 1.7996 -2.2299 -2.4918 23 6 1.4420 -2.9320 -3.5662 24 7 1.0135 -4.1059 -3.1827 25 7 1.1159 -4.1377 -1.7824 26 6 0.7517 -5.2492 -0.9003 27 6 -0.4170 -4.8291 -0.0065 28 6 0.3394 -6.4565 -1.7449 29 6 1.9521 -5.6227 -0.0283 30 1 -0.3634 -0.0004 -1.0276 31 1 -0.3634 -0.8897 0.5143 32 1 -0.3633 0.8903 0.5134 33 1 4.9262 -1.5607 -2.0845 34 1 5.7312 -2.8407 -1.1453 35 1 3.9572 -2.8248 -1.2898 36 1 5.1728 1.0069 -1.1775 37 1 6.9423 1.0243 -0.9873 38 1 6.1665 -0.2307 -1.9834 39 1 9.3896 0.9412 0.5319 40 1 2.6982 -3.1212 0.4172 41 1 1.0013 -2.6180 0.6059 42 1 1.4934 -2.5858 -4.5879 43 1 -1.2401 -4.4754 -0.6272 44 1 -0.7482 -5.6834 0.5839 45 1 -0.0950 -4.0294 0.6604 46 1 1.1720 -6.7557 -2.3816 47 1 0.0688 -7.2837 -1.0886 48 1 -0.5157 -6.1904 -2.3661 49 1 2.1842 -4.7964 0.6437 50 1 1.7137 -6.5109 0.5568 51 1 2.8135 -5.8268 -0.6642 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001411684499.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:14:40 Heat of formation + Delta-G solvation = 199.720008 kcal Electronic energy + Delta-G solvation = -33040.984137 eV Core-core repulsion = 29015.383369 eV Total energy + Delta-G solvation = -4025.600768 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -42.72936 -42.14105 -37.64950 -37.27277 -35.37119 -32.86043 -31.68818 -31.46838 -31.15443 -28.69964 -28.15535 -28.02798 -27.61960 -27.01874 -25.13336 -24.84000 -23.25608 -21.88976 -21.57778 -20.36897 -19.84646 -19.38763 -17.14786 -16.78304 -16.19889 -16.06719 -15.89233 -15.42846 -15.16137 -14.97194 -14.58766 -14.43166 -14.05033 -13.85097 -13.53274 -13.42384 -13.17068 -13.03392 -12.85280 -12.72787 -12.70555 -12.61709 -12.36700 -12.23793 -12.14552 -11.79472 -11.53416 -11.38818 -11.30042 -11.05435 -10.88987 -10.72956 -10.43167 -10.15994 -10.09723 -10.03229 -9.92208 -9.86341 -9.70048 -9.61435 -8.84029 -8.81068 -8.36578 -7.30121 -5.99786 -4.07093 1.33687 1.78502 2.32887 2.60219 2.79611 3.31403 3.36644 3.37741 3.50949 3.69886 3.91527 4.18261 4.29282 4.30936 4.38421 4.49043 4.58771 4.65296 4.68610 4.93847 4.97265 5.08659 5.13425 5.14821 5.19633 5.23656 5.28551 5.31502 5.47971 5.52265 5.64794 5.69368 5.73081 5.75630 5.94077 6.10377 6.17250 6.23266 6.27766 6.41055 6.51245 6.55544 6.89598 7.04625 7.20095 7.34019 7.54064 7.71628 7.77536 7.94240 8.02073 8.34396 8.50412 8.93938 9.45315 9.57171 11.06438 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011755 B = 0.003814 C = 0.003244 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2381.410569 B = 7339.648556 C = 8629.575474 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.054 4.054 2 C 0.160 3.840 3 N -0.285 5.285 4 N -0.312 5.312 5 C 0.397 3.603 6 N -0.455 5.455 7 C 0.042 3.958 8 C 0.230 3.770 9 H 0.053 0.947 10 C -0.173 4.173 11 C -0.514 4.514 12 H 0.061 0.939 13 C 0.065 3.935 14 N -0.883 5.883 15 Si 0.898 3.102 16 H -0.278 1.278 17 H -0.287 1.287 18 H -0.277 1.277 19 N -0.478 5.478 20 C 0.194 3.806 21 C 0.257 3.743 22 N -0.516 5.516 23 C 0.199 3.801 24 N -0.311 5.311 25 N -0.361 5.361 26 C 0.172 3.828 27 C -0.164 4.164 28 C -0.140 4.140 29 C -0.171 4.171 30 H 0.077 0.923 31 H 0.063 0.937 32 H 0.090 0.910 33 H 0.041 0.959 34 H 0.086 0.914 35 H 0.040 0.960 36 H 0.044 0.956 37 H 0.089 0.911 38 H 0.020 0.980 39 H 0.263 0.737 40 H 0.128 0.872 41 H 0.113 0.887 42 H 0.216 0.784 43 H 0.068 0.932 44 H 0.086 0.914 45 H 0.064 0.936 46 H 0.069 0.931 47 H 0.074 0.926 48 H 0.069 0.931 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.072 0.928 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.441 -14.295 -1.737 25.004 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.113 4.113 2 C -0.107 4.107 3 N -0.123 5.123 4 N -0.155 5.155 5 C 0.042 3.958 6 N -0.179 5.179 7 C -0.105 4.105 8 C 0.126 3.874 9 H 0.071 0.929 10 C -0.232 4.232 11 C -0.553 4.553 12 H 0.079 0.921 13 C -0.138 4.138 14 N -0.521 5.521 15 Si 0.726 3.274 16 H -0.204 1.204 17 H -0.212 1.212 18 H -0.203 1.203 19 N -0.176 5.176 20 C 0.066 3.934 21 C -0.021 4.021 22 N -0.243 5.243 23 C -0.104 4.104 24 N -0.138 5.138 25 N -0.154 5.154 26 C 0.089 3.911 27 C -0.222 4.222 28 C -0.198 4.198 29 C -0.229 4.229 30 H 0.095 0.905 31 H 0.082 0.918 32 H 0.109 0.891 33 H 0.059 0.941 34 H 0.105 0.895 35 H 0.058 0.942 36 H 0.063 0.937 37 H 0.107 0.893 38 H 0.039 0.961 39 H 0.073 0.927 40 H 0.146 0.854 41 H 0.131 0.869 42 H 0.233 0.767 43 H 0.087 0.913 44 H 0.105 0.895 45 H 0.083 0.917 46 H 0.088 0.912 47 H 0.093 0.907 48 H 0.088 0.912 49 H 0.087 0.913 50 H 0.107 0.893 51 H 0.091 0.909 Dipole moment (debyes) X Y Z Total from point charges -19.985 -13.274 -1.770 24.057 hybrid contribution 0.631 -1.596 -0.528 1.796 sum -19.354 -14.870 -2.298 24.514 Atomic orbital electron populations 1.20015 0.84837 1.03284 1.03167 1.24354 0.95829 0.82534 1.08005 1.73952 0.97158 1.23982 1.17245 1.74883 1.10134 1.06775 1.23663 1.23199 0.84189 0.89593 0.98822 1.59360 0.99783 1.23079 1.35662 1.22338 1.01236 0.96698 0.90267 1.19350 0.82539 0.89583 0.95924 0.92928 1.22433 1.02816 1.00593 0.97390 1.20974 0.90252 0.92896 1.51157 0.92071 1.24875 0.98814 0.94986 0.95123 1.69912 1.24386 1.08581 1.49214 0.86569 0.82207 0.80102 0.78525 1.20374 1.21241 1.20253 1.45693 1.06613 1.05803 1.59468 1.20243 1.03320 0.81782 0.88053 1.24277 0.96181 0.84221 0.97443 1.70576 1.24548 1.32533 0.96623 1.25996 0.96492 0.88143 0.99723 1.78017 1.25824 1.21917 0.88081 1.50664 1.47501 1.12254 1.04994 1.20933 0.95939 0.85258 0.88964 1.22342 0.97215 1.03126 0.99559 1.21887 1.03066 0.95021 0.99792 1.22420 0.97111 1.03365 0.99975 0.90453 0.91763 0.89098 0.94082 0.89520 0.94152 0.93706 0.89280 0.96062 0.92727 0.85420 0.86888 0.76728 0.91304 0.89478 0.91680 0.91241 0.90671 0.91184 0.91251 0.89328 0.90918 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.05 -0.60 10.26 36.00 0.37 -0.23 16 2 C 0.16 2.68 8.07 -154.01 -1.24 1.44 16 3 N -0.28 -6.02 12.18 32.99 0.40 -5.62 16 4 N -0.31 -7.37 9.14 30.31 0.28 -7.09 16 5 C 0.40 8.44 6.73 -318.87 -2.15 6.29 16 6 N -0.46 -10.06 4.74 -176.08 -0.84 -10.90 16 7 C 0.04 0.84 8.72 60.07 0.52 1.36 16 8 C 0.23 6.01 2.04 -68.87 -0.14 5.86 16 9 H 0.05 1.56 8.03 -51.93 -0.42 1.14 16 10 C -0.17 -4.56 8.27 37.16 0.31 -4.25 16 11 C -0.51 -13.89 7.94 -34.44 -0.27 -14.17 16 12 H 0.06 1.60 6.75 -52.49 -0.35 1.25 16 13 C 0.06 1.77 5.30 -17.82 -0.09 1.68 16 14 N -0.88 -25.46 11.32 55.43 0.63 -24.83 16 15 Si 0.90 21.07 29.54 -169.99 -5.02 16.05 16 16 H -0.28 -6.43 7.11 56.52 0.40 -6.03 16 17 H -0.29 -6.72 7.11 56.52 0.40 -6.32 16 18 H -0.28 -6.41 7.11 56.52 0.40 -6.00 16 19 N -0.48 -7.97 2.53 -115.37 -0.29 -8.26 16 20 C 0.19 2.34 4.05 -5.19 -0.02 2.32 16 21 C 0.26 3.23 5.71 -155.69 -0.89 2.35 16 22 N -0.52 -7.68 10.54 -11.97 -0.13 -7.81 16 23 C 0.20 2.52 13.03 -91.81 -1.20 1.33 16 24 N -0.31 -3.79 11.82 29.29 0.35 -3.45 16 25 N -0.36 -3.87 3.47 -45.70 -0.16 -4.03 16 26 C 0.17 1.25 1.09 -131.81 -0.14 1.11 16 27 C -0.16 -0.86 8.52 37.16 0.32 -0.54 16 28 C -0.14 -0.91 8.04 37.16 0.30 -0.61 16 29 C -0.17 -1.13 8.31 37.16 0.31 -0.82 16 30 H 0.08 0.84 8.14 -51.93 -0.42 0.41 16 31 H 0.06 0.53 7.41 -51.93 -0.38 0.14 16 32 H 0.09 0.91 8.14 -51.93 -0.42 0.48 16 33 H 0.04 0.89 6.26 -51.93 -0.33 0.56 16 34 H 0.09 1.76 6.54 -51.93 -0.34 1.42 16 35 H 0.04 0.70 4.38 -51.93 -0.23 0.47 16 36 H 0.04 1.18 5.67 -51.93 -0.29 0.89 16 37 H 0.09 2.55 6.07 -51.93 -0.32 2.23 16 38 H 0.02 0.53 6.38 -51.93 -0.33 0.20 16 39 H 0.26 7.23 8.31 -40.82 -0.34 6.89 16 40 H 0.13 1.52 5.91 -51.93 -0.31 1.21 16 41 H 0.11 0.95 5.33 -51.93 -0.28 0.68 16 42 H 0.22 2.06 8.06 -52.49 -0.42 1.64 16 43 H 0.07 0.41 8.14 -51.93 -0.42 -0.01 16 44 H 0.09 0.27 8.14 -51.93 -0.42 -0.15 16 45 H 0.06 0.32 5.74 -51.93 -0.30 0.02 16 46 H 0.07 0.54 8.14 -51.93 -0.42 0.12 16 47 H 0.07 0.31 8.14 -51.93 -0.42 -0.11 16 48 H 0.07 0.51 8.14 -51.93 -0.42 0.09 16 49 H 0.07 0.47 5.30 -51.93 -0.27 0.19 16 50 H 0.09 0.38 8.14 -51.93 -0.42 -0.04 16 51 H 0.07 0.60 8.14 -51.93 -0.42 0.18 16 LS Contribution 392.08 15.07 5.91 5.91 Total: -1.00 -34.96 392.08 -10.40 -45.36 By element: Atomic # 1 Polarization: 9.05 SS G_CDS: -7.51 Total: 1.54 kcal Atomic # 6 Polarization: 7.14 SS G_CDS: -4.02 Total: 3.12 kcal Atomic # 7 Polarization: -72.22 SS G_CDS: 0.24 Total: -71.98 kcal Atomic # 14 Polarization: 21.07 SS G_CDS: -5.02 Total: 16.05 kcal Total LS contribution 5.91 Total: 5.91 kcal Total: -34.96 -10.40 -45.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001411684499.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 245.079 kcal (2) G-P(sol) polarization free energy of solvation -34.956 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 210.123 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.403 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.359 kcal (6) G-S(sol) free energy of system = (1) + (5) 199.720 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds