Wall clock time and date at job start Wed Apr 1 2020 05:34:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47077 * 2 1 4 4 C 1.35496 * 126.97839 * 266.23458 * 3 2 1 5 5 N 1.30516 * 107.30317 * 180.25892 * 4 3 2 6 6 N 1.28591 * 109.67540 * 359.56407 * 5 4 3 7 7 C 1.30525 * 109.67342 * 0.44621 * 6 5 4 8 8 C 1.50691 * 126.34619 * 179.73095 * 7 6 5 9 9 N 1.46498 * 109.47379 * 0.67379 * 8 7 6 10 10 C 1.36742 * 127.13609 * 85.32226 * 9 8 7 11 11 C 1.50704 * 126.34689 * 359.96588 * 10 9 8 12 12 C 1.52991 * 109.47280 * 123.58501 * 11 10 9 13 13 C 1.53005 * 109.46902 * 243.58495 * 11 10 9 14 14 N 1.30298 * 107.30568 * 179.83454 * 10 9 8 15 15 N 1.28526 * 110.04974 * 0.43827 * 14 10 9 16 16 C 1.31216 * 109.86362 * 359.72239 * 15 14 10 17 17 N 1.38579 * 126.47655 * 179.97438 * 16 15 14 18 18 C 1.46901 * 111.00076 * 259.26853 * 17 16 15 19 19 C 1.46905 * 111.00002 * 23.21918 * 17 16 15 20 20 H 1.09002 * 109.46885 * 300.00497 * 19 17 16 21 21 C 1.53005 * 109.47145 * 60.00185 * 19 17 16 22 22 C 1.50701 * 109.47346 * 180.02562 * 19 17 16 23 23 H 1.07998 * 119.99859 * 359.97438 * 22 19 17 24 24 C 1.37873 * 120.00129 * 180.02562 * 22 19 17 25 25 N 1.31522 * 119.99829 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00307 * 180.02562 * 24 22 19 27 27 H 1.48499 * 109.46978 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47353 * 119.99656 * 26 24 22 29 29 H 1.48500 * 109.47114 * 239.99780 * 26 24 22 30 30 H 1.08997 * 109.47370 * 60.00256 * 1 2 3 31 31 H 1.09003 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47140 * 299.99853 * 1 2 3 33 33 H 1.08999 * 109.47140 * 240.00147 * 2 1 3 34 34 H 1.08997 * 109.47370 * 119.99743 * 2 1 3 35 35 H 1.08000 * 126.34435 * 359.97438 * 4 3 2 36 36 H 1.09008 * 109.47095 * 120.67443 * 8 7 6 37 37 H 1.09007 * 109.47252 * 240.67194 * 8 7 6 38 38 H 1.08994 * 109.47031 * 3.58068 * 11 10 9 39 39 H 1.09004 * 109.46996 * 60.00081 * 12 11 10 40 40 H 1.08999 * 109.46996 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47543 * 299.99773 * 12 11 10 42 42 H 1.09007 * 109.46996 * 59.99797 * 13 11 10 43 43 H 1.08995 * 109.47336 * 179.97438 * 13 11 10 44 44 H 1.08993 * 109.47201 * 300.00368 * 13 11 10 45 45 H 1.08995 * 109.47098 * 63.29916 * 18 17 16 46 46 H 1.09005 * 109.47186 * 183.29692 * 18 17 16 47 47 H 1.08998 * 109.47276 * 303.29364 * 18 17 16 48 48 H 1.09000 * 109.47094 * 59.99594 * 21 19 17 49 49 H 1.08998 * 109.47336 * 180.02562 * 21 19 17 50 50 H 1.09003 * 109.47030 * 300.00391 * 21 19 17 51 51 H 0.96998 * 119.99620 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3570 2.1260 -1.0801 5 7 2.7447 3.2924 -0.6412 6 7 2.6597 3.3225 0.6415 7 6 2.2229 2.1734 1.0800 8 6 1.9894 1.7974 2.5205 9 7 2.3149 2.9370 3.3816 10 6 1.4939 3.9769 3.7202 11 6 0.0678 4.1710 3.2733 12 6 -0.8379 4.2993 4.4996 13 6 -0.0334 5.4431 2.4292 14 7 2.1723 4.7673 4.5030 15 7 3.3597 4.3059 4.6733 16 6 3.5019 3.1841 4.0075 17 7 4.6423 2.3989 3.9503 18 6 5.3773 2.6282 2.6992 19 6 5.5030 2.6348 5.1173 20 1 5.8011 3.6829 5.1428 21 6 4.7348 2.2918 6.3953 22 6 6.7305 1.7660 5.0200 23 1 6.8583 1.1044 4.1760 24 6 7.6899 1.8149 6.0090 25 7 7.5339 2.6202 7.0371 26 14 9.2117 0.7386 5.8882 27 1 9.1484 -0.0703 4.6444 28 1 10.4237 1.5962 5.8602 29 1 9.2727 -0.1663 7.0640 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3181 1.8110 -2.1124 36 1 0.9434 1.5239 2.6597 37 1 2.6242 0.9509 2.7826 38 1 -0.2462 3.3139 2.6777 39 1 -0.5239 5.1566 5.0952 40 1 -1.8693 4.4402 4.1764 41 1 -0.7659 3.3931 5.1010 42 1 0.6119 5.3517 1.5554 43 1 -1.0647 5.5834 2.1056 44 1 0.2807 6.3003 3.0247 45 1 5.7216 3.6618 2.6644 46 1 6.2355 1.9577 2.6538 47 1 4.7202 2.4353 1.8512 48 1 4.4365 1.2437 6.3697 49 1 5.3732 2.4673 7.2611 50 1 3.8471 2.9205 6.4654 51 1 8.2087 2.6544 7.7331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001417522493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:34 Heat of formation + Delta-G solvation = 175.670747 kcal Electronic energy + Delta-G solvation = -32750.006641 eV Core-core repulsion = 28723.363019 eV Total energy + Delta-G solvation = -4026.643623 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -43.40986 -42.37859 -37.12165 -36.21458 -35.54555 -34.91375 -32.75128 -31.12245 -30.93605 -29.22484 -28.72073 -27.36207 -27.11940 -25.42780 -24.63303 -24.27818 -23.14121 -22.55963 -21.73407 -21.13674 -19.72736 -19.06561 -17.69492 -16.92883 -16.47226 -16.18703 -16.01931 -15.42865 -15.21681 -14.98326 -14.89552 -14.45017 -14.09954 -14.02545 -13.73916 -13.63703 -13.32246 -13.11413 -12.87890 -12.85958 -12.30096 -12.11993 -12.01522 -11.88263 -11.63095 -11.56244 -11.18982 -11.09341 -11.06430 -10.92377 -10.87629 -10.66749 -10.52320 -10.48426 -10.25820 -10.17195 -10.04338 -9.89694 -9.74581 -9.38849 -9.12732 -8.53364 -8.39412 -7.41518 -6.01393 -4.08402 1.51600 1.90865 2.37152 2.65618 2.73147 3.28941 3.36507 3.39156 3.52019 3.88096 4.01254 4.25846 4.30082 4.35897 4.46173 4.49712 4.60601 4.63760 4.72867 4.90150 4.92904 5.00883 5.14077 5.21350 5.30653 5.31635 5.42422 5.56040 5.63404 5.70632 5.79317 5.84863 5.88065 5.90108 6.02019 6.15043 6.28181 6.31625 6.40475 6.48087 6.53455 6.61706 6.97270 6.99625 7.15570 7.25385 7.51626 7.73632 7.78343 8.01332 8.28245 8.50985 8.56568 8.94031 9.44395 9.56084 11.05178 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003927 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.411036 B = 7128.059320 C = 8716.006113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.171 4.171 2 C 0.097 3.903 3 N -0.468 5.468 4 C 0.151 3.849 5 N -0.293 5.293 6 N -0.263 5.263 7 C 0.153 3.847 8 C 0.208 3.792 9 N -0.472 5.472 10 C 0.172 3.828 11 C 0.007 3.993 12 C -0.140 4.140 13 C -0.139 4.139 14 N -0.280 5.280 15 N -0.312 5.312 16 C 0.396 3.604 17 N -0.466 5.466 18 C 0.050 3.950 19 C 0.228 3.772 20 H 0.026 0.974 21 C -0.132 4.132 22 C -0.513 4.513 23 H 0.064 0.936 24 C 0.064 3.936 25 N -0.883 5.883 26 Si 0.898 3.102 27 H -0.274 1.274 28 H -0.284 1.284 29 H -0.284 1.284 30 H 0.065 0.935 31 H 0.083 0.917 32 H 0.064 0.936 33 H 0.102 0.898 34 H 0.100 0.900 35 H 0.218 0.782 36 H 0.108 0.892 37 H 0.124 0.876 38 H 0.070 0.930 39 H 0.071 0.929 40 H 0.061 0.939 41 H 0.054 0.946 42 H 0.059 0.941 43 H 0.058 0.942 44 H 0.068 0.932 45 H 0.031 0.969 46 H 0.089 0.911 47 H 0.044 0.956 48 H 0.025 0.975 49 H 0.089 0.911 50 H 0.019 0.981 51 H 0.262 0.738 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -19.054 -7.826 -15.652 25.870 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.229 4.229 2 C -0.026 4.026 3 N -0.161 5.161 4 C -0.136 4.136 5 N -0.132 5.132 6 N -0.104 5.104 7 C -0.116 4.116 8 C 0.080 3.920 9 N -0.168 5.168 10 C -0.095 4.095 11 C -0.015 4.015 12 C -0.199 4.199 13 C -0.197 4.197 14 N -0.118 5.118 15 N -0.154 5.154 16 C 0.040 3.960 17 N -0.191 5.191 18 C -0.098 4.098 19 C 0.124 3.876 20 H 0.044 0.956 21 C -0.190 4.190 22 C -0.552 4.552 23 H 0.082 0.918 24 C -0.139 4.139 25 N -0.521 5.521 26 Si 0.726 3.274 27 H -0.198 1.198 28 H -0.210 1.210 29 H -0.210 1.210 30 H 0.084 0.916 31 H 0.102 0.898 32 H 0.083 0.917 33 H 0.121 0.879 34 H 0.118 0.882 35 H 0.235 0.765 36 H 0.126 0.874 37 H 0.142 0.858 38 H 0.089 0.911 39 H 0.090 0.910 40 H 0.080 0.920 41 H 0.073 0.927 42 H 0.078 0.922 43 H 0.077 0.923 44 H 0.087 0.913 45 H 0.050 0.950 46 H 0.107 0.893 47 H 0.063 0.937 48 H 0.044 0.956 49 H 0.108 0.892 50 H 0.038 0.962 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -18.191 -5.660 -14.545 23.969 hybrid contribution 0.415 -2.572 -1.126 2.838 sum -17.777 -8.232 -15.671 25.087 Atomic orbital electron populations 1.22174 0.93459 1.03783 1.03434 1.22022 0.96037 0.78782 1.05777 1.46312 1.49357 1.14014 1.06408 1.26469 1.02512 0.89743 0.94836 1.74344 1.18068 1.17506 1.03305 1.74431 1.15889 1.17145 1.02921 1.24956 1.04567 0.89790 0.92270 1.19697 1.03315 0.88956 0.80066 1.45745 1.11750 1.20443 1.38849 1.24363 0.96131 0.87927 1.01085 1.19365 0.85644 0.99381 0.97062 1.21802 0.98068 1.03139 0.96843 1.21774 1.01296 0.96797 0.99848 1.73902 0.99982 1.23157 1.14791 1.74823 1.10383 1.06371 1.23858 1.22938 0.87820 0.91371 0.93845 1.59146 1.04614 1.48172 1.07200 1.22227 0.98060 1.01053 0.88444 1.19346 0.88557 0.97059 0.82639 0.95633 1.21803 0.98340 0.97571 1.01282 1.21085 1.02870 1.23700 1.07559 0.91839 1.24895 0.98225 0.95593 0.95176 1.69934 1.34689 1.37178 1.10336 0.86442 0.82780 0.80218 0.77931 1.19849 1.20990 1.20997 0.91552 0.89846 0.91718 0.87939 0.88215 0.76546 0.87372 0.85832 0.91146 0.91009 0.92048 0.92672 0.92230 0.92314 0.91292 0.95032 0.89296 0.93748 0.95609 0.89234 0.96185 0.92826 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.51 10.24 37.16 0.38 -0.13 16 2 C 0.10 0.39 6.70 -4.04 -0.03 0.37 16 3 N -0.47 -4.04 2.75 -115.31 -0.32 -4.35 16 4 C 0.15 1.45 12.74 -89.95 -1.15 0.30 16 5 N -0.29 -4.30 12.21 29.69 0.36 -3.94 16 6 N -0.26 -4.26 11.27 32.79 0.37 -3.89 16 7 C 0.15 1.90 6.82 -154.99 -1.06 0.84 16 8 C 0.21 2.53 5.94 -5.20 -0.03 2.50 16 9 N -0.47 -8.08 2.54 -115.36 -0.29 -8.38 16 10 C 0.17 2.96 6.58 -154.01 -1.01 1.94 16 11 C 0.01 0.08 3.29 -91.77 -0.30 -0.22 16 12 C -0.14 -1.53 9.17 37.15 0.34 -1.19 16 13 C -0.14 -1.70 9.18 37.16 0.34 -1.36 16 14 N -0.28 -5.97 12.17 32.99 0.40 -5.57 16 15 N -0.31 -7.51 10.18 30.31 0.31 -7.20 16 16 C 0.40 8.55 5.97 -318.88 -1.90 6.65 16 17 N -0.47 -10.48 4.64 -176.08 -0.82 -11.29 16 18 C 0.05 1.05 9.18 60.07 0.55 1.60 16 19 C 0.23 6.01 1.74 -68.86 -0.12 5.90 16 20 H 0.03 0.78 7.90 -51.93 -0.41 0.37 16 21 C -0.13 -3.44 8.80 37.16 0.33 -3.12 16 22 C -0.51 -13.95 7.92 -34.44 -0.27 -14.23 16 23 H 0.06 1.68 6.39 -52.49 -0.34 1.34 16 24 C 0.06 1.75 5.30 -17.82 -0.09 1.66 16 25 N -0.88 -25.55 11.32 55.43 0.63 -24.92 16 26 Si 0.90 21.12 29.54 -169.99 -5.02 16.10 16 27 H -0.27 -6.28 7.11 56.52 0.40 -5.88 16 28 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 29 H -0.28 -6.63 7.11 56.52 0.40 -6.23 16 30 H 0.07 0.22 8.14 -51.93 -0.42 -0.20 16 31 H 0.08 0.12 8.14 -51.93 -0.42 -0.30 16 32 H 0.06 0.25 8.14 -51.93 -0.42 -0.17 16 33 H 0.10 0.21 8.14 -51.93 -0.42 -0.22 16 34 H 0.10 0.36 7.99 -51.93 -0.41 -0.06 16 35 H 0.22 1.04 8.06 -52.49 -0.42 0.62 16 36 H 0.11 0.91 7.39 -51.92 -0.38 0.53 16 37 H 0.12 1.46 8.13 -51.93 -0.42 1.04 16 38 H 0.07 0.73 7.03 -51.93 -0.37 0.36 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.06 0.51 8.14 -51.93 -0.42 0.08 16 41 H 0.05 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.06 0.85 8.14 -51.93 -0.42 0.42 16 43 H 0.06 0.56 8.14 -51.93 -0.42 0.13 16 44 H 0.07 0.93 8.14 -51.93 -0.42 0.51 16 45 H 0.03 0.71 8.14 -51.93 -0.42 0.29 16 46 H 0.09 1.87 6.21 -51.93 -0.32 1.54 16 47 H 0.04 0.85 6.37 -51.93 -0.33 0.52 16 48 H 0.02 0.63 8.14 -51.93 -0.42 0.21 16 49 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 50 H 0.02 0.50 6.34 -51.93 -0.33 0.17 16 51 H 0.26 7.18 8.31 -40.82 -0.34 6.84 16 LS Contribution 411.40 15.07 6.20 6.20 Total: -1.00 -36.77 411.40 -10.47 -47.24 By element: Atomic # 1 Polarization: 6.77 SS G_CDS: -8.26 Total: -1.49 kcal Atomic # 6 Polarization: 5.53 SS G_CDS: -4.03 Total: 1.50 kcal Atomic # 7 Polarization: -70.19 SS G_CDS: 0.64 Total: -69.54 kcal Atomic # 14 Polarization: 21.12 SS G_CDS: -5.02 Total: 16.10 kcal Total LS contribution 6.20 Total: 6.20 kcal Total: -36.77 -10.47 -47.24 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417522493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 222.908 kcal (2) G-P(sol) polarization free energy of solvation -36.770 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 186.138 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.467 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.237 kcal (6) G-S(sol) free energy of system = (1) + (5) 175.671 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds