Wall clock time and date at job start Wed Apr 1 2020 05:34:33 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 N 1.46507 * 109.47077 * 2 1 4 4 C 1.35496 * 126.97839 * 266.23458 * 3 2 1 5 5 N 1.30516 * 107.30317 * 180.25892 * 4 3 2 6 6 N 1.28591 * 109.67540 * 359.56407 * 5 4 3 7 7 C 1.30525 * 109.67342 * 0.44621 * 6 5 4 8 8 C 1.50691 * 126.34619 * 179.73095 * 7 6 5 9 9 N 1.46498 * 109.47379 * 0.67379 * 8 7 6 10 10 C 1.36742 * 127.13609 * 85.32226 * 9 8 7 11 11 C 1.50704 * 126.34689 * 359.96588 * 10 9 8 12 12 C 1.52991 * 109.47280 * 123.58501 * 11 10 9 13 13 C 1.53005 * 109.46902 * 243.58495 * 11 10 9 14 14 N 1.30298 * 107.30568 * 179.83454 * 10 9 8 15 15 N 1.28526 * 110.04974 * 0.43827 * 14 10 9 16 16 C 1.31216 * 109.86362 * 359.72239 * 15 14 10 17 17 N 1.38579 * 126.47655 * 179.97438 * 16 15 14 18 18 C 1.46901 * 111.00076 * 259.26853 * 17 16 15 19 19 C 1.46905 * 111.00002 * 23.21918 * 17 16 15 20 20 H 1.09002 * 109.46885 * 300.00497 * 19 17 16 21 21 C 1.53005 * 109.47145 * 60.00185 * 19 17 16 22 22 C 1.50701 * 109.47346 * 180.02562 * 19 17 16 23 23 H 1.07998 * 119.99859 * 359.97438 * 22 19 17 24 24 C 1.37873 * 120.00129 * 180.02562 * 22 19 17 25 25 N 1.31522 * 119.99829 * 359.97438 * 24 22 19 26 26 Si 1.86796 * 120.00307 * 180.02562 * 24 22 19 27 27 H 1.48499 * 109.46978 * 359.97438 * 26 24 22 28 28 H 1.48497 * 109.47353 * 119.99656 * 26 24 22 29 29 H 1.48500 * 109.47114 * 239.99780 * 26 24 22 30 30 H 1.08997 * 109.47370 * 60.00256 * 1 2 3 31 31 H 1.09003 * 109.46700 * 180.02562 * 1 2 3 32 32 H 1.08999 * 109.47140 * 299.99853 * 1 2 3 33 33 H 1.08999 * 109.47140 * 240.00147 * 2 1 3 34 34 H 1.08997 * 109.47370 * 119.99743 * 2 1 3 35 35 H 1.08000 * 126.34435 * 359.97438 * 4 3 2 36 36 H 1.09008 * 109.47095 * 120.67443 * 8 7 6 37 37 H 1.09007 * 109.47252 * 240.67194 * 8 7 6 38 38 H 1.08994 * 109.47031 * 3.58068 * 11 10 9 39 39 H 1.09004 * 109.46996 * 60.00081 * 12 11 10 40 40 H 1.08999 * 109.46996 * 179.97438 * 12 11 10 41 41 H 1.08994 * 109.47543 * 299.99773 * 12 11 10 42 42 H 1.09007 * 109.46996 * 59.99797 * 13 11 10 43 43 H 1.08995 * 109.47336 * 179.97438 * 13 11 10 44 44 H 1.08993 * 109.47201 * 300.00368 * 13 11 10 45 45 H 1.08995 * 109.47098 * 63.29916 * 18 17 16 46 46 H 1.09005 * 109.47186 * 183.29692 * 18 17 16 47 47 H 1.08998 * 109.47276 * 303.29364 * 18 17 16 48 48 H 1.09000 * 109.47094 * 59.99594 * 21 19 17 49 49 H 1.08998 * 109.47336 * 180.02562 * 21 19 17 50 50 H 1.09003 * 109.47030 * 300.00391 * 21 19 17 51 51 H 0.96998 * 119.99620 * 179.97438 * 25 24 22 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.3570 2.1260 -1.0801 5 7 2.7447 3.2924 -0.6412 6 7 2.6597 3.3225 0.6415 7 6 2.2229 2.1734 1.0800 8 6 1.9894 1.7974 2.5205 9 7 2.3149 2.9370 3.3816 10 6 1.4939 3.9769 3.7202 11 6 0.0678 4.1710 3.2733 12 6 -0.8379 4.2993 4.4996 13 6 -0.0334 5.4431 2.4292 14 7 2.1723 4.7673 4.5030 15 7 3.3597 4.3059 4.6733 16 6 3.5019 3.1841 4.0075 17 7 4.6423 2.3989 3.9503 18 6 5.3773 2.6282 2.6992 19 6 5.5030 2.6348 5.1173 20 1 5.8011 3.6829 5.1428 21 6 4.7348 2.2918 6.3953 22 6 6.7305 1.7660 5.0200 23 1 6.8583 1.1044 4.1760 24 6 7.6899 1.8149 6.0090 25 7 7.5339 2.6202 7.0371 26 14 9.2117 0.7386 5.8882 27 1 9.1484 -0.0703 4.6444 28 1 10.4237 1.5962 5.8602 29 1 9.2727 -0.1663 7.0640 30 1 -0.3634 0.5138 -0.8900 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 1.8933 -0.5138 -0.8900 34 1 1.8933 -0.5138 0.8900 35 1 2.3181 1.8110 -2.1124 36 1 0.9434 1.5239 2.6597 37 1 2.6242 0.9509 2.7826 38 1 -0.2462 3.3139 2.6777 39 1 -0.5239 5.1566 5.0952 40 1 -1.8693 4.4402 4.1764 41 1 -0.7659 3.3931 5.1010 42 1 0.6119 5.3517 1.5554 43 1 -1.0647 5.5834 2.1056 44 1 0.2807 6.3003 3.0247 45 1 5.7216 3.6618 2.6644 46 1 6.2355 1.9577 2.6538 47 1 4.7202 2.4353 1.8512 48 1 4.4365 1.2437 6.3697 49 1 5.3732 2.4673 7.2611 50 1 3.8471 2.9205 6.4654 51 1 8.2087 2.6544 7.7331 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001417522493.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:34:33 Heat of formation + Delta-G solvation = 154.613800 kcal Electronic energy + Delta-G solvation = -32750.919739 eV Core-core repulsion = 28723.363019 eV Total energy + Delta-G solvation = -4027.556720 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.03 seconds Orbital eigenvalues (eV) -44.31688 -43.81027 -38.93149 -36.94756 -36.64566 -36.11763 -34.75711 -32.05840 -31.52267 -31.27149 -30.31050 -28.43498 -28.05914 -27.40633 -26.15482 -25.07960 -24.45519 -23.62975 -23.12764 -22.19505 -21.06426 -20.55229 -18.59907 -18.34658 -17.91794 -17.43984 -17.24801 -16.94392 -16.54206 -16.15586 -15.88220 -15.73356 -15.37873 -15.10090 -14.95834 -14.71239 -14.48706 -14.21466 -14.00769 -13.96416 -13.69788 -13.19536 -13.05430 -13.03763 -12.90380 -12.76738 -12.60708 -12.38997 -12.34305 -12.26135 -12.22204 -12.18126 -12.17314 -12.07291 -12.03315 -11.44375 -11.37571 -11.21294 -11.15497 -11.06566 -10.58819 -10.32413 -10.25397 -9.22148 -8.12996 -6.28446 0.71932 0.76127 1.17408 1.44017 1.44710 1.56850 1.62654 1.84644 1.94041 2.40983 2.93916 3.01434 3.17844 3.28179 3.54581 3.67347 3.73160 3.81668 3.95927 4.07018 4.08032 4.15055 4.28167 4.36767 4.39928 4.43923 4.49661 4.55158 4.63579 4.76943 4.78723 4.82238 4.86052 4.87147 4.92885 4.94945 4.98178 5.01725 5.04178 5.14134 5.14759 5.26320 5.33457 5.40089 5.42869 5.57786 5.64612 5.89623 5.92213 5.96831 6.15779 6.57969 6.81391 7.40318 7.70584 7.88225 8.94386 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.010671 B = 0.003927 C = 0.003212 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2623.411036 B = 7128.059320 C = 8716.006113 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.166 4.166 2 C 0.087 3.913 3 N -0.456 5.456 4 C 0.174 3.826 5 N -0.350 5.350 6 N -0.320 5.320 7 C 0.149 3.851 8 C 0.199 3.801 9 N -0.463 5.463 10 C 0.199 3.801 11 C 0.007 3.993 12 C -0.135 4.135 13 C -0.132 4.132 14 N -0.326 5.326 15 N -0.364 5.364 16 C 0.377 3.623 17 N -0.454 5.454 18 C 0.063 3.937 19 C 0.240 3.760 20 H -0.028 1.028 21 C -0.112 4.112 22 C -0.525 4.525 23 H 0.072 0.928 24 C 0.012 3.988 25 N -0.919 5.919 26 Si 0.970 3.030 27 H -0.259 1.259 28 H -0.285 1.285 29 H -0.278 1.278 30 H 0.063 0.937 31 H 0.103 0.897 32 H 0.057 0.943 33 H 0.130 0.870 34 H 0.108 0.892 35 H 0.263 0.737 36 H 0.154 0.846 37 H 0.130 0.870 38 H 0.104 0.896 39 H 0.048 0.952 40 H 0.098 0.902 41 H 0.056 0.944 42 H 0.035 0.965 43 H 0.096 0.904 44 H 0.047 0.953 45 H 0.001 0.999 46 H 0.090 0.910 47 H 0.065 0.935 48 H 0.034 0.966 49 H 0.064 0.936 50 H 0.015 0.985 51 H 0.263 0.737 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.384 -11.331 -18.088 30.214 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.224 4.224 2 C -0.033 4.033 3 N -0.147 5.147 4 C -0.114 4.114 5 N -0.189 5.189 6 N -0.161 5.161 7 C -0.122 4.122 8 C 0.074 3.926 9 N -0.158 5.158 10 C -0.070 4.070 11 C -0.014 4.014 12 C -0.193 4.193 13 C -0.190 4.190 14 N -0.163 5.163 15 N -0.206 5.206 16 C 0.019 3.981 17 N -0.179 5.179 18 C -0.085 4.085 19 C 0.134 3.866 20 H -0.010 1.010 21 C -0.171 4.171 22 C -0.563 4.563 23 H 0.091 0.909 24 C -0.187 4.187 25 N -0.558 5.558 26 Si 0.795 3.205 27 H -0.183 1.183 28 H -0.211 1.211 29 H -0.204 1.204 30 H 0.082 0.918 31 H 0.121 0.879 32 H 0.076 0.924 33 H 0.148 0.852 34 H 0.126 0.874 35 H 0.279 0.721 36 H 0.171 0.829 37 H 0.148 0.852 38 H 0.122 0.878 39 H 0.067 0.933 40 H 0.117 0.883 41 H 0.075 0.925 42 H 0.055 0.945 43 H 0.115 0.885 44 H 0.066 0.934 45 H 0.019 0.981 46 H 0.108 0.892 47 H 0.084 0.916 48 H 0.053 0.947 49 H 0.083 0.917 50 H 0.034 0.966 51 H 0.072 0.928 Dipole moment (debyes) X Y Z Total from point charges -20.565 -9.201 -17.016 28.233 hybrid contribution 0.984 -1.475 -0.495 1.841 sum -19.581 -10.675 -17.512 28.355 Atomic orbital electron populations 1.22164 0.92354 1.04932 1.02963 1.22479 0.96889 0.76294 1.07638 1.46525 1.48212 1.15129 1.04829 1.27266 0.99338 0.88284 0.96509 1.74225 1.20975 1.20596 1.03096 1.74326 1.18051 1.19614 1.04074 1.24775 1.04640 0.89829 0.92913 1.20180 1.06110 0.87041 0.79291 1.45840 1.09902 1.21473 1.38558 1.25368 0.97358 0.86200 0.98095 1.19725 0.82698 1.00764 0.98229 1.21786 0.99547 1.02261 0.95740 1.21710 1.02984 0.95872 0.98406 1.73799 0.99798 1.25025 1.17705 1.74674 1.12229 1.08074 1.25631 1.22748 0.88669 0.91404 0.95281 1.59082 1.04380 1.48240 1.06194 1.22127 0.98460 0.99091 0.88788 1.18973 0.89402 0.93886 0.84331 1.00997 1.21553 0.97448 0.97751 1.00320 1.21350 1.03314 1.23740 1.07905 0.90947 1.25806 1.01422 0.96820 0.94649 1.70095 1.35826 1.38720 1.11148 0.85319 0.78306 0.78328 0.78529 1.18288 1.21071 1.20383 0.91779 0.87862 0.92432 0.85191 0.87403 0.72122 0.82898 0.85222 0.87772 0.93251 0.88316 0.92537 0.94536 0.88550 0.93359 0.98058 0.89163 0.91599 0.94717 0.91732 0.96643 0.92772 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.17 -0.26 10.24 71.98 0.74 0.48 16 2 C 0.09 0.32 6.70 86.38 0.58 0.90 16 3 N -0.46 -6.34 2.75 -518.72 -1.42 -7.77 16 4 C 0.17 2.83 12.74 180.11 2.30 5.12 16 5 N -0.35 -10.03 12.21 -59.99 -0.73 -10.76 16 6 N -0.32 -10.25 11.27 -50.16 -0.57 -10.82 16 7 C 0.15 3.41 6.82 137.98 0.94 4.35 16 8 C 0.20 4.40 5.94 85.63 0.51 4.91 16 9 N -0.46 -15.75 2.54 -518.90 -1.32 -17.07 16 10 C 0.20 6.82 6.58 137.64 0.91 7.72 16 11 C 0.01 0.15 3.29 -11.54 -0.04 0.12 16 12 C -0.14 -2.62 9.17 71.98 0.66 -1.96 16 13 C -0.13 -3.06 9.18 71.98 0.66 -2.40 16 14 N -0.33 -14.57 12.17 -49.53 -0.60 -15.18 16 15 N -0.36 -18.62 10.18 -58.01 -0.59 -19.21 16 16 C 0.38 16.88 5.97 260.11 1.55 18.43 16 17 N -0.45 -21.08 4.64 -710.98 -3.30 -24.38 16 18 C 0.06 2.74 9.18 127.69 1.17 3.91 16 19 C 0.24 13.25 1.74 44.17 0.08 13.33 16 20 H -0.03 -1.80 7.90 -2.39 -0.02 -1.82 16 21 C -0.11 -6.13 8.80 71.98 0.63 -5.50 16 22 C -0.52 -29.09 7.92 25.60 0.20 -28.89 16 23 H 0.07 3.81 6.39 -2.91 -0.02 3.79 16 24 C 0.01 0.69 5.30 84.65 0.45 1.14 16 25 N -0.92 -54.98 11.32 21.45 0.24 -54.74 16 26 Si 0.97 43.49 29.54 68.60 2.03 45.52 16 27 H -0.26 -10.91 7.11 99.48 0.71 -10.20 16 28 H -0.28 -12.73 7.11 99.48 0.71 -12.02 16 29 H -0.28 -12.15 7.11 99.48 0.71 -11.45 16 30 H 0.06 0.16 8.14 -2.39 -0.02 0.14 16 31 H 0.10 -0.20 8.14 -2.39 -0.02 -0.22 16 32 H 0.06 0.19 8.14 -2.39 -0.02 0.17 16 33 H 0.13 -0.17 8.14 -2.39 -0.02 -0.19 16 34 H 0.11 0.29 7.99 -2.39 -0.02 0.27 16 35 H 0.26 1.37 8.06 -2.91 -0.02 1.35 16 36 H 0.15 1.93 7.39 -2.38 -0.02 1.91 16 37 H 0.13 2.74 8.13 -2.38 -0.02 2.72 16 38 H 0.10 1.71 7.03 -2.39 -0.02 1.69 16 39 H 0.05 1.19 8.14 -2.38 -0.02 1.17 16 40 H 0.10 1.21 8.14 -2.39 -0.02 1.19 16 41 H 0.06 1.09 8.14 -2.39 -0.02 1.07 16 42 H 0.04 1.02 8.14 -2.38 -0.02 1.00 16 43 H 0.10 1.52 8.14 -2.39 -0.02 1.50 16 44 H 0.05 1.31 8.14 -2.39 -0.02 1.30 16 45 H 0.00 0.03 8.14 -2.39 -0.02 0.01 16 46 H 0.09 3.85 6.21 -2.38 -0.01 3.83 16 47 H 0.07 2.56 6.37 -2.39 -0.02 2.55 16 48 H 0.03 1.76 8.14 -2.39 -0.02 1.74 16 49 H 0.06 3.83 6.07 -2.39 -0.01 3.82 16 50 H 0.01 0.81 6.34 -2.39 -0.02 0.79 16 51 H 0.26 14.86 8.31 -92.71 -0.77 14.09 16 Total: -1.00 -88.52 411.40 5.99 -82.53 By element: Atomic # 1 Polarization: 9.28 SS G_CDS: 0.92 Total: 10.20 kcal Atomic # 6 Polarization: 10.33 SS G_CDS: 11.34 Total: 21.67 kcal Atomic # 7 Polarization: -151.62 SS G_CDS: -8.29 Total: -159.92 kcal Atomic # 14 Polarization: 43.49 SS G_CDS: 2.03 Total: 45.52 kcal Total: -88.52 5.99 -82.53 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001417522493.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 237.145 kcal (2) G-P(sol) polarization free energy of solvation -88.525 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 148.620 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.994 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -82.531 kcal (6) G-S(sol) free energy of system = (1) + (5) 154.614 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.03 seconds