Wall clock time and date at job start Wed Apr 1 2020 05:32:38
AMSOL-version 7.1
by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers,
I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget,
B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar
Copyright 2004 by Regents of the University of Minnesota.
All rights reserved.
Notice: recipients of this code are asked to comply
with the user agreement in Section 1 of the documentation file.
*******************************************************************************
* 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION
* - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT)
* GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK
* TLIMIT= - A TIME OF 15. SECONDS REQUESTED
* CHARGE - CHARGE ON SYSTEM= -1
* AM1 - THE AM1 HAMILTONIAN TO BE USED
* SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED
* - CHARGE MODEL 2 WILL BE USED (CM2A)
* - THE SOLVENT IS WATER
*******************************************************************************
Atom NO. Chemical Bond length Bond angle Dihedral angle
number (k) symbol (angstroms) (degrees) (degrees)
(I) NA:I NB:NA:I NC:NB:NA:I NA NB NC
1 1 C
2 2 C 1.53002 * 1
3 3 C 1.52999 * 109.47455 * 2 1
4 4 C 1.53003 * 109.47084 * 120.00488 * 2 1 3
5 5 C 1.50695 * 109.47713 * 64.99558 * 4 2 1
6 6 N 1.30298 * 126.34987 * 270.16184 * 5 4 2
7 7 N 1.28521 * 110.05239 * 180.30719 * 6 5 4
8 8 C 1.31219 * 109.86682 * 359.71586 * 7 6 5
9 9 N 1.38571 * 126.47963 * 180.02562 * 8 7 6
10 10 C 1.46903 * 110.99846 * 307.25865 * 9 8 7
11 11 C 1.46895 * 111.00141 * 71.20854 * 9 8 7
12 12 H 1.08998 * 109.47427 * 55.00356 * 11 9 8
13 13 C 1.53003 * 109.47432 * 295.00109 * 11 9 8
14 14 C 1.50703 * 109.47512 * 175.00249 * 11 9 8
15 15 H 1.08004 * 119.99481 * 359.97438 * 14 11 9
16 16 C 1.37874 * 120.00506 * 180.02562 * 14 11 9
17 17 N 1.31520 * 119.99523 * 0.02562 * 16 14 11
18 18 Si 1.86796 * 120.00172 * 180.02562 * 16 14 11
19 19 H 1.48493 * 109.47166 * 60.00047 * 18 16 14
20 20 H 1.48505 * 109.47247 * 180.02562 * 18 16 14
21 21 H 1.48505 * 109.46893 * 299.99858 * 18 16 14
22 22 N 1.36455 * 107.04782 * 359.97438 * 8 7 6
23 23 C 1.46503 * 127.13673 * 179.97438 * 22 8 7
24 24 C 1.53009 * 109.46837 * 85.84477 * 23 22 8
25 25 N 1.46494 * 109.46971 * 180.02562 * 24 23 22
26 26 C 1.34425 * 126.82254 * 124.99978 * 25 24 23
27 27 N 1.30835 * 108.07650 * 179.97438 * 26 25 24
28 28 C 1.33231 * 109.83085 * 0.02562 * 27 26 25
29 29 N 1.30715 * 108.94891 * 0.26256 * 28 27 26
30 30 H 1.09005 * 109.46860 * 299.99975 * 1 2 3
31 31 H 1.08995 * 109.47242 * 59.99731 * 1 2 3
32 32 H 1.09003 * 109.47222 * 180.02562 * 1 2 3
33 33 H 1.09004 * 109.47079 * 239.99522 * 2 1 3
34 34 H 1.09001 * 109.47304 * 180.02562 * 3 2 1
35 35 H 1.08995 * 109.47115 * 300.00346 * 3 2 1
36 36 H 1.09005 * 109.47066 * 60.00151 * 3 2 1
37 37 H 1.09000 * 109.46722 * 304.99510 * 4 2 1
38 38 H 1.09002 * 109.46823 * 184.99895 * 4 2 1
39 39 H 1.09002 * 109.47258 * 61.73384 * 10 9 8
40 40 H 1.09002 * 109.47031 * 181.73928 * 10 9 8
41 41 H 1.09007 * 109.47131 * 301.73418 * 10 9 8
42 42 H 1.08998 * 109.47016 * 300.00498 * 13 11 9
43 43 H 1.09006 * 109.46660 * 59.99895 * 13 11 9
44 44 H 1.08998 * 109.47556 * 179.97438 * 13 11 9
45 45 H 0.97002 * 119.99545 * 180.02562 * 17 16 14
46 46 H 1.09002 * 109.47211 * 325.84654 * 23 22 8
47 47 H 1.09001 * 109.47201 * 205.84286 * 23 22 8
48 48 H 1.08993 * 109.46808 * 60.00048 * 24 23 22
49 49 H 1.08995 * 109.46822 * 300.00251 * 24 23 22
50 50 H 1.08000 * 125.96243 * 359.97438 * 26 25 24
51 51 H 1.08003 * 125.52967 * 179.97438 * 28 27 26
Note: An asterisk (*) indicates this parameter was or will be optimized.
Cartesian coordinates (angstroms)
NO. Atom X Y Z
1 6 0.0000 0.0000 0.0000
2 6 1.5300 0.0000 0.0000
3 6 2.0401 1.4425 0.0000
4 6 2.0400 -0.7214 1.2492
5 6 1.6413 -2.1734 1.1889
6 7 0.5390 -2.6914 1.6518
7 7 0.5241 -3.9587 1.4384
8 6 1.6225 -4.3193 0.8176
9 7 1.9611 -5.6032 0.4212
10 6 1.8639 -6.5441 1.5452
11 6 1.1289 -6.0428 -0.7066
12 1 1.2048 -5.3189 -1.5180
13 6 -0.3286 -6.1501 -0.2537
14 6 1.6056 -7.3889 -1.1882
15 1 2.4434 -7.8695 -0.7050
16 6 0.9729 -8.0063 -2.2463
17 7 -0.0463 -7.4201 -2.8356
18 14 1.5634 -9.6751 -2.8427
19 1 1.4588 -10.6612 -1.7373
20 1 0.7229 -10.1188 -3.9837
21 1 2.9783 -9.5716 -3.2816
22 7 2.3677 -3.1909 0.6350
23 6 3.6778 -3.0915 -0.0130
24 6 3.4894 -2.9399 -1.5238
25 7 4.7995 -2.8411 -2.1718
26 6 5.2655 -3.6132 -3.1687
27 7 6.4727 -3.2063 -3.4668
28 6 6.8103 -2.1817 -2.6850
29 7 5.8204 -1.9247 -1.8710
30 1 -0.3633 0.5139 0.8900
31 1 -0.3633 0.5138 -0.8899
32 1 -0.3634 -1.0277 0.0005
33 1 1.8934 -0.5139 -0.8900
34 1 3.1301 1.4424 -0.0005
35 1 1.6768 1.9563 -0.8899
36 1 1.6768 1.9563 0.8900
37 1 1.6054 -0.2618 2.1369
38 1 3.1264 -0.6444 1.2951
39 1 0.8351 -6.5764 1.9040
40 1 2.1647 -7.5381 1.2140
41 1 2.5198 -6.2159 2.3516
42 1 -0.4045 -6.8739 0.5577
43 1 -0.6734 -5.1764 0.0946
44 1 -0.9462 -6.4758 -1.0906
45 1 -0.4916 -7.8547 -3.5798
46 1 4.2543 -3.9934 0.1926
47 1 4.2104 -2.2234 0.3756
48 1 2.9130 -2.0380 -1.7293
49 1 2.9568 -3.8079 -1.9123
50 1 4.7359 -4.4273 -3.6410
51 1 7.7513 -1.6524 -2.7154
RHF calculation, no. of doubly occupied orbitals= 66
REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN:
H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985)
Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987).
REFERENCE FOR CHARGE MODEL 2:
J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885.
REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL:
J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and
D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63
P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted.
CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R
& SOLVNT=WATER
ZINC001434596982.mol2 51
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
SCF FIELD WAS ACHIEVED
Wall clock time and date at job start Wed Apr 1 2020 05:32:38
Heat of formation + Delta-G solvation = 166.018989 kcal
Electronic energy + Delta-G solvation = -32404.521910 eV
Core-core repulsion = 28377.459756 eV
Total energy + Delta-G solvation = -4027.062154 eV
No. of doubly occupied orbitals = 66
Molecular weight
(most abundant/longest-lived isotopes) = 347.213 amu
Computer time = 1.19 seconds
Orbital eigenvalues (eV)
-44.06202 -43.02229 -39.09051 -37.63331 -37.00187 -34.85652 -34.51742 -32.19692
-31.73523 -30.68931 -30.06942 -28.15788 -27.94074 -27.19763 -26.88651 -25.66550
-23.27311 -22.99177 -22.67264 -22.21037 -21.18864 -20.72230 -18.78475 -18.26170
-17.83662 -17.42062 -17.03056 -16.67529 -16.53853 -16.15668 -15.96335 -15.71521
-15.41178 -15.19068 -14.93854 -14.83686 -14.68053 -14.24985 -14.04876 -13.59461
-13.42297 -13.25467 -13.12280 -13.08963 -12.98892 -12.85313 -12.68310 -12.66085
-12.51790 -12.39232 -12.10627 -12.08854 -11.99071 -11.83747 -11.63759 -11.47001
-11.42753 -11.05940 -10.93527 -10.80787 -10.65433 -10.50534 -9.97752 -9.45476
-8.12833 -6.25647 0.53349 0.73483 0.96245 1.47555 1.48518 1.52704
1.56534 1.82275 1.99994 2.43019 2.98481 3.17539 3.22119 3.32232
3.43428 3.51069 3.72362 3.86486 3.89497 3.95588 4.06834 4.13691
4.23731 4.28263 4.30328 4.49399 4.54863 4.63983 4.66692 4.73238
4.81623 4.85183 4.89791 4.96994 5.00725 5.02476 5.08560 5.10174
5.12891 5.21263 5.24925 5.40027 5.43590 5.45928 5.46251 5.63769
5.65057 5.73260 5.82161 5.98236 6.20849 6.61413 6.83522 7.07846
7.43811 7.75961 8.93114
Molecular weight = 347.21amu
Principal moments of inertia in cm(-1)
A = 0.008002 B = 0.004546 C = 0.003289
Principal moments of inertia in units of 10**(-40)*gram-cm**2
A = 3498.285128 B = 6157.788431 C = 8510.070848
Net atomic charges, atomic populations, and dipole contributions
calculated with CM2
Atom NO. Type Charge No. of electrons
1 C -0.145 4.145
2 C -0.085 4.085
3 C -0.138 4.138
4 C -0.023 4.023
5 C 0.190 3.810
6 N -0.321 5.321
7 N -0.343 5.343
8 C 0.357 3.643
9 N -0.464 5.464
10 C 0.051 3.949
11 C 0.240 3.760
12 H 0.009 0.991
13 C -0.157 4.157
14 C -0.516 4.516
15 H 0.069 0.931
16 C 0.022 3.978
17 N -0.917 5.917
18 Si 0.958 3.042
19 H -0.273 1.273
20 H -0.290 1.290
21 H -0.266 1.266
22 N -0.466 5.466
23 C 0.118 3.882
24 C 0.128 3.872
25 N -0.377 5.377
26 C 0.265 3.735
27 N -0.571 5.571
28 C 0.199 3.801
29 N -0.337 5.337
30 H 0.066 0.934
31 H 0.058 0.942
32 H 0.027 0.973
33 H 0.056 0.944
34 H 0.066 0.934
35 H 0.059 0.941
36 H 0.069 0.931
37 H 0.110 0.890
38 H 0.106 0.894
39 H 0.028 0.972
40 H 0.086 0.914
41 H 0.065 0.935
42 H 0.030 0.970
43 H 0.027 0.973
44 H 0.061 0.939
45 H 0.262 0.738
46 H 0.099 0.901
47 H 0.126 0.874
48 H 0.099 0.901
49 H 0.101 0.899
50 H 0.236 0.764
51 H 0.249 0.751
For the charges calculated by CM2:
Dipole moment (debyes) X Y Z Total
from point charges 10.592 15.116 3.491 18.785
Note: The Mulliken population analysis charges presented below were not
used in the solvation calculation but are provided for completeness.
The chosen solvation model uses CM2 partial charges for calculating
solvation energies.
Net atomic charges, atomic populations, and dipole contributions
using Mulliken population analysis
Atom NO. Type Charge No. of electrons
1 C -0.203 4.203
2 C -0.104 4.104
3 C -0.195 4.195
4 C -0.063 4.063
5 C -0.078 4.078
6 N -0.160 5.160
7 N -0.185 5.185
8 C 0.000 4.000
9 N -0.190 5.190
10 C -0.096 4.096
11 C 0.134 3.866
12 H 0.027 0.973
13 C -0.216 4.216
14 C -0.554 4.554
15 H 0.087 0.913
16 C -0.178 4.178
17 N -0.556 5.556
18 Si 0.784 3.216
19 H -0.199 1.199
20 H -0.216 1.216
21 H -0.191 1.191
22 N -0.160 5.160
23 C -0.006 4.006
24 C 0.005 3.995
25 N -0.167 5.167
26 C -0.032 4.032
27 N -0.299 5.299
28 C -0.104 4.104
29 N -0.165 5.165
30 H 0.085 0.915
31 H 0.077 0.923
32 H 0.046 0.954
33 H 0.075 0.925
34 H 0.085 0.915
35 H 0.078 0.922
36 H 0.088 0.912
37 H 0.129 0.871
38 H 0.124 0.876
39 H 0.046 0.954
40 H 0.105 0.895
41 H 0.083 0.917
42 H 0.049 0.951
43 H 0.046 0.954
44 H 0.079 0.921
45 H 0.071 0.929
46 H 0.117 0.883
47 H 0.144 0.856
48 H 0.117 0.883
49 H 0.119 0.881
50 H 0.252 0.748
51 H 0.265 0.735
Dipole moment (debyes) X Y Z Total
from point charges 9.746 15.403 4.188 18.703
hybrid contribution -0.155 -1.486 -0.986 1.790
sum 9.591 13.917 3.202 17.203
Atomic orbital electron populations
1.21827 0.95436 1.00728 1.02299 1.21064 0.95837 0.97466 0.96053
1.21763 1.01545 0.93392 1.02837 1.20398 1.02825 0.81863 1.01204
1.25434 0.89986 0.94069 0.98279 1.73927 1.18555 1.01693 1.21802
1.74667 1.18197 1.06233 1.19438 1.22841 0.88385 0.89336 0.99469
1.59331 1.54506 0.95753 1.09398 1.22202 1.00065 0.96369 0.90971
1.19034 0.87373 0.95062 0.85130 0.97333 1.22242 1.00971 0.98303
1.00086 1.21184 1.15725 1.02788 1.15732 0.91298 1.25598 0.94802
1.00932 0.96430 1.70026 1.22275 1.39911 1.23369 0.85604 0.78462
0.79913 0.77629 1.19859 1.21604 1.19129 1.46285 1.18047 1.06971
1.44723 1.21936 0.81087 1.06439 0.91159 1.21974 0.80024 1.05060
0.92470 1.50310 1.13605 1.24967 1.27864 1.26658 0.91336 0.96334
0.88857 1.70637 1.13171 1.15968 1.30085 1.26701 0.99863 0.93968
0.89827 1.77946 0.98386 1.14565 1.25577 0.91483 0.92287 0.95426
0.92518 0.91478 0.92156 0.91226 0.87141 0.87596 0.95351 0.89530
0.91660 0.95126 0.95392 0.92057 0.92867 0.88295 0.85608 0.88321
0.88118 0.74803 0.73519
Number of geometries 1
Number of calculations of the screened coulomb radii 1
The total number of SCF iterations 15.
Note: The number of geometries may not
correspond to the number of cycles due to rejected geometry changes.
In the following table subtotal= G_P + SS G_CDS.
Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M
number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value
1 C -0.15 -3.19 9.01 71.98 0.65 -2.54 16
2 C -0.08 -1.52 2.91 -10.79 -0.03 -1.55 16
3 C -0.14 -1.74 9.19 71.98 0.66 -1.07 16
4 C -0.02 -0.44 5.05 29.85 0.15 -0.29 16
5 C 0.19 5.51 6.54 137.64 0.90 6.41 16
6 N -0.32 -11.96 11.48 -49.54 -0.57 -12.53 16
7 N -0.34 -14.44 9.87 -58.01 -0.57 -15.01 16
8 C 0.36 13.67 6.20 260.11 1.61 15.29 16
9 N -0.46 -18.67 4.77 -710.99 -3.39 -22.06 16
10 C 0.05 1.94 8.70 127.69 1.11 3.05 16
11 C 0.24 11.35 2.31 44.17 0.10 11.45 16
12 H 0.01 0.46 7.91 -2.39 -0.02 0.44 16
13 C -0.16 -7.82 8.19 71.98 0.59 -7.23 16
14 C -0.52 -25.55 7.91 25.60 0.20 -25.35 16
15 H 0.07 3.32 6.76 -2.91 -0.02 3.30 16
16 C 0.02 1.13 5.30 84.65 0.45 1.58 16
17 N -0.92 -49.67 11.32 21.45 0.24 -49.42 16
18 Si 0.96 40.51 29.54 68.60 2.03 42.54 16
19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16
20 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16
21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16
22 N -0.47 -14.02 2.81 -514.83 -1.45 -15.47 16
23 C 0.12 2.77 6.27 86.38 0.54 3.31 16
24 C 0.13 3.02 6.88 86.38 0.59 3.61 16
25 N -0.38 -8.74 3.69 -352.07 -1.30 -10.04 16
26 C 0.26 6.22 12.63 180.36 2.28 8.50 16
27 N -0.57 -14.07 11.19 -204.01 -2.28 -16.35 16
28 C 0.20 4.08 13.03 180.77 2.36 6.43 16
29 N -0.34 -7.57 12.56 -61.25 -0.77 -8.34 16
30 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16
31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16
32 H 0.03 0.80 6.83 -2.39 -0.02 0.78 16
33 H 0.06 1.13 6.70 -2.38 -0.02 1.11 16
34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16
35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16
36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16
37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16
38 H 0.11 1.47 7.19 -2.39 -0.02 1.46 16
39 H 0.03 1.14 6.31 -2.39 -0.02 1.13 16
40 H 0.09 3.27 6.46 -2.39 -0.02 3.25 16
41 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16
42 H 0.03 1.49 6.43 -2.39 -0.02 1.47 16
43 H 0.03 1.39 5.97 -2.38 -0.01 1.37 16
44 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16
45 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16
46 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16
47 H 0.13 2.37 7.13 -2.39 -0.02 2.36 16
48 H 0.10 2.18 6.70 -2.39 -0.02 2.17 16
49 H 0.10 2.83 7.89 -2.39 -0.02 2.81 16
50 H 0.24 4.57 8.06 -2.91 -0.02 4.54 16
51 H 0.25 2.93 8.06 -2.91 -0.02 2.91 16
Total: -1.00 -66.03 406.59 5.03 -61.00
By element:
Atomic # 1 Polarization: 23.17 SS G_CDS: 0.93 Total: 24.10 kcal
Atomic # 6 Polarization: 9.43 SS G_CDS: 12.16 Total: 21.59 kcal
Atomic # 7 Polarization: -139.14 SS G_CDS: -10.09 Total: -149.23 kcal
Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal
Total: -66.03 5.03 -61.00 kcal
The number of atoms in the molecule is 51
The average number of expansion shells was 16.00
The maximum number of expansion shells was 16
The minimum number of expansion shells was 16
**** NOTA BENE ****
This is the net solvation energy for this exact molecular structure
(nuclear and electronic)! The standard-state solvation energy should be
obtained as the difference between the heat of formation plus delta-G solvation
for the relaxed solvated system and that for the relaxed gas-phase system.
ZINC001434596982.mol2 51
1SCF run
This is a breakdown of the solvation energy calculated
without geometric relaxation in solution:
(1) E-EN(sol) electronic-nuclear energy of solute 227.021 kcal
(2) G-P(sol) polarization free energy of solvation -66.033 kcal
(3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.987 kcal
(4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal
(5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.002 kcal
(6) G-S(sol) free energy of system = (1) + (5) 166.019 kcal
1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED
Total computer time = 1.19 seconds