Wall clock time and date at job start Wed Apr 1 2020 05:32:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 C 1.52999 * 109.47455 * 2 1 4 4 C 1.53003 * 109.47084 * 120.00488 * 2 1 3 5 5 C 1.50695 * 109.47713 * 64.99558 * 4 2 1 6 6 N 1.30298 * 126.34987 * 270.16184 * 5 4 2 7 7 N 1.28521 * 110.05239 * 180.30719 * 6 5 4 8 8 C 1.31219 * 109.86682 * 359.71586 * 7 6 5 9 9 N 1.38571 * 126.47963 * 180.02562 * 8 7 6 10 10 C 1.46903 * 110.99846 * 307.25865 * 9 8 7 11 11 C 1.46895 * 111.00141 * 71.20854 * 9 8 7 12 12 H 1.08998 * 109.47427 * 55.00356 * 11 9 8 13 13 C 1.53003 * 109.47432 * 295.00109 * 11 9 8 14 14 C 1.50703 * 109.47512 * 175.00249 * 11 9 8 15 15 H 1.08004 * 119.99481 * 359.97438 * 14 11 9 16 16 C 1.37874 * 120.00506 * 180.02562 * 14 11 9 17 17 N 1.31520 * 119.99523 * 0.02562 * 16 14 11 18 18 Si 1.86796 * 120.00172 * 180.02562 * 16 14 11 19 19 H 1.48493 * 109.47166 * 60.00047 * 18 16 14 20 20 H 1.48505 * 109.47247 * 180.02562 * 18 16 14 21 21 H 1.48505 * 109.46893 * 299.99858 * 18 16 14 22 22 N 1.36455 * 107.04782 * 359.97438 * 8 7 6 23 23 C 1.46503 * 127.13673 * 179.97438 * 22 8 7 24 24 C 1.53009 * 109.46837 * 85.84477 * 23 22 8 25 25 N 1.46494 * 109.46971 * 180.02562 * 24 23 22 26 26 C 1.34425 * 126.82254 * 124.99978 * 25 24 23 27 27 N 1.30835 * 108.07650 * 179.97438 * 26 25 24 28 28 C 1.33231 * 109.83085 * 0.02562 * 27 26 25 29 29 N 1.30715 * 108.94891 * 0.26256 * 28 27 26 30 30 H 1.09005 * 109.46860 * 299.99975 * 1 2 3 31 31 H 1.08995 * 109.47242 * 59.99731 * 1 2 3 32 32 H 1.09003 * 109.47222 * 180.02562 * 1 2 3 33 33 H 1.09004 * 109.47079 * 239.99522 * 2 1 3 34 34 H 1.09001 * 109.47304 * 180.02562 * 3 2 1 35 35 H 1.08995 * 109.47115 * 300.00346 * 3 2 1 36 36 H 1.09005 * 109.47066 * 60.00151 * 3 2 1 37 37 H 1.09000 * 109.46722 * 304.99510 * 4 2 1 38 38 H 1.09002 * 109.46823 * 184.99895 * 4 2 1 39 39 H 1.09002 * 109.47258 * 61.73384 * 10 9 8 40 40 H 1.09002 * 109.47031 * 181.73928 * 10 9 8 41 41 H 1.09007 * 109.47131 * 301.73418 * 10 9 8 42 42 H 1.08998 * 109.47016 * 300.00498 * 13 11 9 43 43 H 1.09006 * 109.46660 * 59.99895 * 13 11 9 44 44 H 1.08998 * 109.47556 * 179.97438 * 13 11 9 45 45 H 0.97002 * 119.99545 * 180.02562 * 17 16 14 46 46 H 1.09002 * 109.47211 * 325.84654 * 23 22 8 47 47 H 1.09001 * 109.47201 * 205.84286 * 23 22 8 48 48 H 1.08993 * 109.46808 * 60.00048 * 24 23 22 49 49 H 1.08995 * 109.46822 * 300.00251 * 24 23 22 50 50 H 1.08000 * 125.96243 * 359.97438 * 26 25 24 51 51 H 1.08003 * 125.52967 * 179.97438 * 28 27 26 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 6 2.0400 -0.7214 1.2492 5 6 1.6413 -2.1734 1.1889 6 7 0.5390 -2.6914 1.6518 7 7 0.5241 -3.9587 1.4384 8 6 1.6225 -4.3193 0.8176 9 7 1.9611 -5.6032 0.4212 10 6 1.8639 -6.5441 1.5452 11 6 1.1289 -6.0428 -0.7066 12 1 1.2048 -5.3189 -1.5180 13 6 -0.3286 -6.1501 -0.2537 14 6 1.6056 -7.3889 -1.1882 15 1 2.4434 -7.8695 -0.7050 16 6 0.9729 -8.0063 -2.2463 17 7 -0.0463 -7.4201 -2.8356 18 14 1.5634 -9.6751 -2.8427 19 1 1.4588 -10.6612 -1.7373 20 1 0.7229 -10.1188 -3.9837 21 1 2.9783 -9.5716 -3.2816 22 7 2.3677 -3.1909 0.6350 23 6 3.6778 -3.0915 -0.0130 24 6 3.4894 -2.9399 -1.5238 25 7 4.7995 -2.8411 -2.1718 26 6 5.2655 -3.6132 -3.1687 27 7 6.4727 -3.2063 -3.4668 28 6 6.8103 -2.1817 -2.6850 29 7 5.8204 -1.9247 -1.8710 30 1 -0.3633 0.5139 0.8900 31 1 -0.3633 0.5138 -0.8899 32 1 -0.3634 -1.0277 0.0005 33 1 1.8934 -0.5139 -0.8900 34 1 3.1301 1.4424 -0.0005 35 1 1.6768 1.9563 -0.8899 36 1 1.6768 1.9563 0.8900 37 1 1.6054 -0.2618 2.1369 38 1 3.1264 -0.6444 1.2951 39 1 0.8351 -6.5764 1.9040 40 1 2.1647 -7.5381 1.2140 41 1 2.5198 -6.2159 2.3516 42 1 -0.4045 -6.8739 0.5577 43 1 -0.6734 -5.1764 0.0946 44 1 -0.9462 -6.4758 -1.0906 45 1 -0.4916 -7.8547 -3.5798 46 1 4.2543 -3.9934 0.1926 47 1 4.2104 -2.2234 0.3756 48 1 2.9130 -2.0380 -1.7293 49 1 2.9568 -3.8079 -1.9123 50 1 4.7359 -4.4273 -3.6410 51 1 7.7513 -1.6524 -2.7154 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001434596982.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:32:38 Heat of formation + Delta-G solvation = 166.018989 kcal Electronic energy + Delta-G solvation = -32404.521910 eV Core-core repulsion = 28377.459756 eV Total energy + Delta-G solvation = -4027.062154 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.19 seconds Orbital eigenvalues (eV) -44.06202 -43.02229 -39.09051 -37.63331 -37.00187 -34.85652 -34.51742 -32.19692 -31.73523 -30.68931 -30.06942 -28.15788 -27.94074 -27.19763 -26.88651 -25.66550 -23.27311 -22.99177 -22.67264 -22.21037 -21.18864 -20.72230 -18.78475 -18.26170 -17.83662 -17.42062 -17.03056 -16.67529 -16.53853 -16.15668 -15.96335 -15.71521 -15.41178 -15.19068 -14.93854 -14.83686 -14.68053 -14.24985 -14.04876 -13.59461 -13.42297 -13.25467 -13.12280 -13.08963 -12.98892 -12.85313 -12.68310 -12.66085 -12.51790 -12.39232 -12.10627 -12.08854 -11.99071 -11.83747 -11.63759 -11.47001 -11.42753 -11.05940 -10.93527 -10.80787 -10.65433 -10.50534 -9.97752 -9.45476 -8.12833 -6.25647 0.53349 0.73483 0.96245 1.47555 1.48518 1.52704 1.56534 1.82275 1.99994 2.43019 2.98481 3.17539 3.22119 3.32232 3.43428 3.51069 3.72362 3.86486 3.89497 3.95588 4.06834 4.13691 4.23731 4.28263 4.30328 4.49399 4.54863 4.63983 4.66692 4.73238 4.81623 4.85183 4.89791 4.96994 5.00725 5.02476 5.08560 5.10174 5.12891 5.21263 5.24925 5.40027 5.43590 5.45928 5.46251 5.63769 5.65057 5.73260 5.82161 5.98236 6.20849 6.61413 6.83522 7.07846 7.43811 7.75961 8.93114 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008002 B = 0.004546 C = 0.003289 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3498.285128 B = 6157.788431 C = 8510.070848 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.085 4.085 3 C -0.138 4.138 4 C -0.023 4.023 5 C 0.190 3.810 6 N -0.321 5.321 7 N -0.343 5.343 8 C 0.357 3.643 9 N -0.464 5.464 10 C 0.051 3.949 11 C 0.240 3.760 12 H 0.009 0.991 13 C -0.157 4.157 14 C -0.516 4.516 15 H 0.069 0.931 16 C 0.022 3.978 17 N -0.917 5.917 18 Si 0.958 3.042 19 H -0.273 1.273 20 H -0.290 1.290 21 H -0.266 1.266 22 N -0.466 5.466 23 C 0.118 3.882 24 C 0.128 3.872 25 N -0.377 5.377 26 C 0.265 3.735 27 N -0.571 5.571 28 C 0.199 3.801 29 N -0.337 5.337 30 H 0.066 0.934 31 H 0.058 0.942 32 H 0.027 0.973 33 H 0.056 0.944 34 H 0.066 0.934 35 H 0.059 0.941 36 H 0.069 0.931 37 H 0.110 0.890 38 H 0.106 0.894 39 H 0.028 0.972 40 H 0.086 0.914 41 H 0.065 0.935 42 H 0.030 0.970 43 H 0.027 0.973 44 H 0.061 0.939 45 H 0.262 0.738 46 H 0.099 0.901 47 H 0.126 0.874 48 H 0.099 0.901 49 H 0.101 0.899 50 H 0.236 0.764 51 H 0.249 0.751 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.592 15.116 3.491 18.785 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C -0.104 4.104 3 C -0.195 4.195 4 C -0.063 4.063 5 C -0.078 4.078 6 N -0.160 5.160 7 N -0.185 5.185 8 C 0.000 4.000 9 N -0.190 5.190 10 C -0.096 4.096 11 C 0.134 3.866 12 H 0.027 0.973 13 C -0.216 4.216 14 C -0.554 4.554 15 H 0.087 0.913 16 C -0.178 4.178 17 N -0.556 5.556 18 Si 0.784 3.216 19 H -0.199 1.199 20 H -0.216 1.216 21 H -0.191 1.191 22 N -0.160 5.160 23 C -0.006 4.006 24 C 0.005 3.995 25 N -0.167 5.167 26 C -0.032 4.032 27 N -0.299 5.299 28 C -0.104 4.104 29 N -0.165 5.165 30 H 0.085 0.915 31 H 0.077 0.923 32 H 0.046 0.954 33 H 0.075 0.925 34 H 0.085 0.915 35 H 0.078 0.922 36 H 0.088 0.912 37 H 0.129 0.871 38 H 0.124 0.876 39 H 0.046 0.954 40 H 0.105 0.895 41 H 0.083 0.917 42 H 0.049 0.951 43 H 0.046 0.954 44 H 0.079 0.921 45 H 0.071 0.929 46 H 0.117 0.883 47 H 0.144 0.856 48 H 0.117 0.883 49 H 0.119 0.881 50 H 0.252 0.748 51 H 0.265 0.735 Dipole moment (debyes) X Y Z Total from point charges 9.746 15.403 4.188 18.703 hybrid contribution -0.155 -1.486 -0.986 1.790 sum 9.591 13.917 3.202 17.203 Atomic orbital electron populations 1.21827 0.95436 1.00728 1.02299 1.21064 0.95837 0.97466 0.96053 1.21763 1.01545 0.93392 1.02837 1.20398 1.02825 0.81863 1.01204 1.25434 0.89986 0.94069 0.98279 1.73927 1.18555 1.01693 1.21802 1.74667 1.18197 1.06233 1.19438 1.22841 0.88385 0.89336 0.99469 1.59331 1.54506 0.95753 1.09398 1.22202 1.00065 0.96369 0.90971 1.19034 0.87373 0.95062 0.85130 0.97333 1.22242 1.00971 0.98303 1.00086 1.21184 1.15725 1.02788 1.15732 0.91298 1.25598 0.94802 1.00932 0.96430 1.70026 1.22275 1.39911 1.23369 0.85604 0.78462 0.79913 0.77629 1.19859 1.21604 1.19129 1.46285 1.18047 1.06971 1.44723 1.21936 0.81087 1.06439 0.91159 1.21974 0.80024 1.05060 0.92470 1.50310 1.13605 1.24967 1.27864 1.26658 0.91336 0.96334 0.88857 1.70637 1.13171 1.15968 1.30085 1.26701 0.99863 0.93968 0.89827 1.77946 0.98386 1.14565 1.25577 0.91483 0.92287 0.95426 0.92518 0.91478 0.92156 0.91226 0.87141 0.87596 0.95351 0.89530 0.91660 0.95126 0.95392 0.92057 0.92867 0.88295 0.85608 0.88321 0.88118 0.74803 0.73519 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -3.19 9.01 71.98 0.65 -2.54 16 2 C -0.08 -1.52 2.91 -10.79 -0.03 -1.55 16 3 C -0.14 -1.74 9.19 71.98 0.66 -1.07 16 4 C -0.02 -0.44 5.05 29.85 0.15 -0.29 16 5 C 0.19 5.51 6.54 137.64 0.90 6.41 16 6 N -0.32 -11.96 11.48 -49.54 -0.57 -12.53 16 7 N -0.34 -14.44 9.87 -58.01 -0.57 -15.01 16 8 C 0.36 13.67 6.20 260.11 1.61 15.29 16 9 N -0.46 -18.67 4.77 -710.99 -3.39 -22.06 16 10 C 0.05 1.94 8.70 127.69 1.11 3.05 16 11 C 0.24 11.35 2.31 44.17 0.10 11.45 16 12 H 0.01 0.46 7.91 -2.39 -0.02 0.44 16 13 C -0.16 -7.82 8.19 71.98 0.59 -7.23 16 14 C -0.52 -25.55 7.91 25.60 0.20 -25.35 16 15 H 0.07 3.32 6.76 -2.91 -0.02 3.30 16 16 C 0.02 1.13 5.30 84.65 0.45 1.58 16 17 N -0.92 -49.67 11.32 21.45 0.24 -49.42 16 18 Si 0.96 40.51 29.54 68.60 2.03 42.54 16 19 H -0.27 -11.38 7.11 99.48 0.71 -10.67 16 20 H -0.29 -12.35 7.11 99.48 0.71 -11.64 16 21 H -0.27 -10.81 7.11 99.48 0.71 -10.10 16 22 N -0.47 -14.02 2.81 -514.83 -1.45 -15.47 16 23 C 0.12 2.77 6.27 86.38 0.54 3.31 16 24 C 0.13 3.02 6.88 86.38 0.59 3.61 16 25 N -0.38 -8.74 3.69 -352.07 -1.30 -10.04 16 26 C 0.26 6.22 12.63 180.36 2.28 8.50 16 27 N -0.57 -14.07 11.19 -204.01 -2.28 -16.35 16 28 C 0.20 4.08 13.03 180.77 2.36 6.43 16 29 N -0.34 -7.57 12.56 -61.25 -0.77 -8.34 16 30 H 0.07 1.33 8.14 -2.38 -0.02 1.31 16 31 H 0.06 1.18 8.14 -2.39 -0.02 1.16 16 32 H 0.03 0.80 6.83 -2.39 -0.02 0.78 16 33 H 0.06 1.13 6.70 -2.38 -0.02 1.11 16 34 H 0.07 0.73 8.14 -2.39 -0.02 0.71 16 35 H 0.06 0.75 8.14 -2.39 -0.02 0.73 16 36 H 0.07 0.75 8.14 -2.38 -0.02 0.73 16 37 H 0.11 1.87 8.14 -2.39 -0.02 1.85 16 38 H 0.11 1.47 7.19 -2.39 -0.02 1.46 16 39 H 0.03 1.14 6.31 -2.39 -0.02 1.13 16 40 H 0.09 3.27 6.46 -2.39 -0.02 3.25 16 41 H 0.06 2.15 8.14 -2.38 -0.02 2.13 16 42 H 0.03 1.49 6.43 -2.39 -0.02 1.47 16 43 H 0.03 1.39 5.97 -2.38 -0.01 1.37 16 44 H 0.06 3.36 6.07 -2.39 -0.01 3.35 16 45 H 0.26 13.70 8.31 -92.71 -0.77 12.93 16 46 H 0.10 2.54 8.14 -2.39 -0.02 2.52 16 47 H 0.13 2.37 7.13 -2.39 -0.02 2.36 16 48 H 0.10 2.18 6.70 -2.39 -0.02 2.17 16 49 H 0.10 2.83 7.89 -2.39 -0.02 2.81 16 50 H 0.24 4.57 8.06 -2.91 -0.02 4.54 16 51 H 0.25 2.93 8.06 -2.91 -0.02 2.91 16 Total: -1.00 -66.03 406.59 5.03 -61.00 By element: Atomic # 1 Polarization: 23.17 SS G_CDS: 0.93 Total: 24.10 kcal Atomic # 6 Polarization: 9.43 SS G_CDS: 12.16 Total: 21.59 kcal Atomic # 7 Polarization: -139.14 SS G_CDS: -10.09 Total: -149.23 kcal Atomic # 14 Polarization: 40.51 SS G_CDS: 2.03 Total: 42.54 kcal Total: -66.03 5.03 -61.00 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001434596982.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.021 kcal (2) G-P(sol) polarization free energy of solvation -66.033 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 160.987 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.002 kcal (6) G-S(sol) free energy of system = (1) + (5) 166.019 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds