Wall clock time and date at job start Wed Apr 1 2020 04:47:24 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46499 * 1 3 3 C 1.46503 * 119.99856 * 2 1 4 4 C 1.53004 * 109.47267 * 270.00386 * 3 2 1 5 5 N 1.46896 * 109.47066 * 179.97438 * 4 3 2 6 6 C 1.46900 * 111.00211 * 294.29908 * 5 4 3 7 7 C 1.53243 * 109.33996 * 172.74589 * 6 5 4 8 8 N 1.47079 * 108.51978 * 53.83238 * 7 6 5 9 9 C 1.36937 * 120.87913 * 128.83165 * 8 7 6 10 10 H 1.07998 * 120.00678 * 333.49312 * 9 8 7 11 11 C 1.38815 * 119.99653 * 153.48605 * 9 8 7 12 12 N 1.31616 * 119.99852 * 159.44311 * 11 9 8 13 13 Si 1.86795 * 120.00199 * 339.44816 * 11 9 8 14 14 H 1.48502 * 109.47505 * 91.97247 * 13 11 9 15 15 H 1.48505 * 109.47365 * 211.97271 * 13 11 9 16 16 H 1.48503 * 109.47171 * 331.97584 * 13 11 9 17 17 C 1.47084 * 118.23775 * 308.81731 * 8 7 6 18 18 C 1.46907 * 110.99690 * 170.00132 * 5 4 3 19 19 C 1.34777 * 120.00494 * 180.02562 * 2 1 3 20 20 O 1.21271 * 120.00285 * 179.97438 * 19 2 1 21 21 C 1.50702 * 119.99527 * 359.97438 * 19 2 1 22 22 H 1.09001 * 115.56298 * 34.29837 * 21 19 2 23 23 C 1.52999 * 117.49776 * 248.60858 * 21 19 2 24 24 C 1.53000 * 60.03227 * 252.52612 * 23 21 19 25 25 H 1.08996 * 117.49749 * 107.50314 * 24 23 21 26 26 C 1.50697 * 117.49713 * 252.49916 * 24 23 21 27 27 C 1.34675 * 126.59441 * 33.29390 * 26 24 23 28 28 N 1.34127 * 108.02159 * 179.87372 * 27 26 24 29 29 C 1.30495 * 109.25695 * 0.40189 * 28 27 26 30 30 N 1.35048 * 108.69890 * 359.75233 * 29 28 27 31 31 H 0.97007 * 126.39451 * 179.97438 * 30 29 28 32 32 H 1.09002 * 109.46727 * 269.99793 * 1 2 3 33 33 H 1.08998 * 109.47526 * 29.99799 * 1 2 3 34 34 H 1.09005 * 109.47219 * 149.99856 * 1 2 3 35 35 H 1.08998 * 109.47214 * 29.99871 * 3 2 1 36 36 H 1.08999 * 109.47086 * 150.00214 * 3 2 1 37 37 H 1.08998 * 109.47126 * 300.00409 * 4 3 2 38 38 H 1.09003 * 109.46754 * 59.99695 * 4 3 2 39 39 H 1.08992 * 109.49557 * 292.71221 * 6 5 4 40 40 H 1.09002 * 109.49211 * 52.78972 * 6 5 4 41 41 H 1.09003 * 109.62624 * 294.12366 * 7 6 5 42 42 H 1.08993 * 109.78716 * 173.63653 * 7 6 5 43 43 H 0.97004 * 120.00124 * 179.97438 * 12 11 9 44 44 H 1.09000 * 109.62304 * 291.47300 * 17 8 7 45 45 H 1.09003 * 109.78772 * 170.98717 * 17 8 7 46 46 H 1.09004 * 109.49194 * 307.21141 * 18 5 4 47 47 H 1.08996 * 109.49431 * 67.29344 * 18 5 4 48 48 H 1.09004 * 117.49696 * 145.02343 * 23 21 19 49 49 H 1.09001 * 117.50076 * 0.03135 * 23 21 19 50 50 H 1.08003 * 125.98305 * 0.03301 * 27 26 24 51 51 H 1.08003 * 125.65063 * 179.77768 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2688 0.0000 4 6 2.4524 1.7105 -1.4425 5 7 3.1863 2.9830 -1.4425 6 6 2.3666 4.0636 -0.8782 7 6 3.2234 5.3252 -0.7283 8 7 3.8413 5.6275 -2.0283 9 6 3.7454 6.8778 -2.5784 10 1 2.9104 7.5154 -2.3280 11 6 4.7215 7.3259 -3.4578 12 7 4.4573 8.3137 -4.2865 13 14 6.4100 6.5270 -3.4650 14 1 6.4318 5.4244 -4.4594 15 1 7.4351 7.5392 -3.8257 16 1 6.7057 5.9823 -2.1154 17 6 4.5653 4.5512 -2.7217 18 6 3.6557 3.3200 -2.7931 19 6 2.1390 -1.1671 -0.0005 20 8 3.3517 -1.1671 -0.0010 21 6 1.3855 -2.4723 -0.0005 22 1 0.4466 -2.4733 -0.5543 23 6 1.4614 -3.3318 1.2629 24 6 2.2082 -3.7631 -0.0009 25 1 3.2940 -3.6682 -0.0010 26 6 1.6584 -4.9388 -0.7668 27 6 0.3613 -5.2772 -0.8959 28 7 0.2940 -6.3812 -1.6547 29 6 1.5006 -6.7447 -1.9936 30 7 2.3818 -5.8713 -1.4601 31 1 3.3472 -5.8998 -1.5510 32 1 -0.3633 0.0000 1.0277 33 1 -0.3634 0.8900 -0.5138 34 1 -0.3634 -0.8900 -0.5139 35 1 1.6084 2.0284 0.5138 36 1 3.1499 1.1384 0.5138 37 1 3.0414 0.9509 -1.9564 38 1 1.4999 1.8408 -1.9563 39 1 1.5285 4.2699 -1.5439 40 1 1.9896 3.7618 0.0990 41 1 4.0012 5.1533 0.0157 42 1 2.5974 6.1615 -0.4172 43 1 5.1396 8.6271 -4.9008 44 1 5.4721 4.3050 -2.1692 45 1 4.8267 4.8723 -3.7301 46 1 4.2137 2.4789 -3.2047 47 1 2.7997 3.5367 -3.4322 48 1 0.5725 -3.8984 1.5404 49 1 2.0560 -2.9531 2.0943 50 1 -0.4778 -4.7503 -0.4661 51 1 1.7528 -7.6017 -2.6005 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001481468451.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:24 Heat of formation + Delta-G solvation = 100.196993 kcal Electronic energy + Delta-G solvation = -30212.963214 eV Core-core repulsion = 26150.754053 eV Total energy + Delta-G solvation = -4062.209161 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -42.52166 -40.44917 -38.51328 -37.17368 -35.93122 -34.50572 -32.92787 -31.71236 -30.58510 -29.99769 -29.41110 -27.10099 -26.43340 -24.44926 -23.77771 -23.51998 -22.42730 -22.05161 -21.54321 -20.78170 -19.42610 -19.17467 -18.64317 -17.35808 -16.99235 -16.39652 -15.94407 -15.39522 -15.35535 -15.12281 -14.80652 -14.69381 -14.44247 -14.11570 -13.97215 -13.89939 -13.83135 -13.68725 -13.36024 -13.09124 -12.78224 -12.59686 -12.46511 -12.33320 -12.17200 -11.77541 -11.69693 -11.47415 -11.16737 -11.06401 -10.86614 -10.54896 -10.43852 -10.41626 -10.30703 -10.11020 -10.04201 -9.82182 -9.45376 -8.96539 -8.70456 -8.62590 -8.01219 -6.95303 -5.93912 -3.28996 1.44993 2.20020 2.50583 2.68255 2.76979 3.34194 3.50107 3.50885 3.55993 3.94385 4.20116 4.22268 4.29672 4.34831 4.51804 4.55065 4.61187 4.79514 4.87773 4.90707 4.98018 5.04564 5.06307 5.17737 5.21371 5.31500 5.32951 5.42535 5.47175 5.49327 5.63050 5.71295 5.76969 5.83933 5.92860 5.95357 6.02526 6.07889 6.22659 6.25074 6.26390 6.38822 6.57853 6.66348 6.88713 6.90230 7.07460 7.39717 7.45193 7.60898 7.90264 7.95067 8.33115 8.93891 9.72871 10.12497 11.22059 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020420 B = 0.001886 C = 0.001810 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1370.853214 B =14844.350284 C =15467.483835 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.610 5.610 3 C 0.118 3.882 4 C 0.044 3.956 5 N -0.531 5.531 6 C 0.039 3.961 7 C 0.152 3.848 8 N -0.608 5.608 9 C -0.259 4.259 10 H 0.085 0.915 11 C 0.021 3.979 12 N -0.910 5.910 13 Si 0.884 3.116 14 H -0.289 1.289 15 H -0.303 1.303 16 H -0.269 1.269 17 C 0.130 3.870 18 C 0.046 3.954 19 C 0.542 3.458 20 O -0.533 6.533 21 C -0.174 4.174 22 H 0.131 0.869 23 C -0.129 4.129 24 C -0.057 4.057 25 H 0.125 0.875 26 C 0.011 3.989 27 C -0.023 4.023 28 N -0.493 5.493 29 C 0.185 3.815 30 N -0.564 5.564 31 H 0.422 0.578 32 H 0.060 0.940 33 H 0.073 0.927 34 H 0.073 0.927 35 H 0.080 0.920 36 H 0.093 0.907 37 H 0.072 0.928 38 H 0.029 0.971 39 H 0.033 0.967 40 H 0.067 0.933 41 H 0.030 0.970 42 H 0.065 0.935 43 H 0.262 0.738 44 H 0.033 0.967 45 H 0.075 0.925 46 H 0.065 0.935 47 H 0.035 0.965 48 H 0.112 0.888 49 H 0.108 0.892 50 H 0.168 0.832 51 H 0.210 0.790 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.165 -28.724 10.380 31.888 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.067 4.067 2 N -0.343 5.343 3 C -0.004 4.004 4 C -0.086 4.086 5 N -0.257 5.257 6 C -0.090 4.090 7 C 0.025 3.975 8 N -0.333 5.333 9 C -0.387 4.387 10 H 0.103 0.897 11 C -0.177 4.177 12 N -0.553 5.553 13 Si 0.714 3.286 14 H -0.217 1.217 15 H -0.232 1.232 16 H -0.194 1.194 17 C 0.004 3.996 18 C -0.083 4.083 19 C 0.329 3.671 20 O -0.410 6.410 21 C -0.195 4.195 22 H 0.148 0.852 23 C -0.167 4.167 24 C -0.077 4.077 25 H 0.143 0.857 26 C -0.105 4.105 27 C -0.171 4.171 28 N -0.211 5.211 29 C -0.098 4.098 30 N -0.167 5.167 31 H 0.260 0.740 32 H 0.079 0.921 33 H 0.092 0.908 34 H 0.091 0.909 35 H 0.098 0.902 36 H 0.112 0.888 37 H 0.090 0.910 38 H 0.047 0.953 39 H 0.051 0.949 40 H 0.085 0.915 41 H 0.048 0.952 42 H 0.083 0.917 43 H 0.072 0.928 44 H 0.051 0.949 45 H 0.093 0.907 46 H 0.083 0.917 47 H 0.053 0.947 48 H 0.130 0.870 49 H 0.126 0.874 50 H 0.185 0.815 51 H 0.226 0.774 Dipole moment (debyes) X Y Z Total from point charges -8.838 -29.017 10.324 32.042 hybrid contribution 1.329 0.139 -0.700 1.509 sum -7.509 -28.878 9.624 31.353 Atomic orbital electron populations 1.21877 0.79230 1.03436 1.02148 1.47752 1.07181 1.06016 1.73378 1.21533 0.98139 0.83342 0.97380 1.22374 0.96801 0.92933 0.96457 1.61849 1.38895 1.01756 1.23183 1.22711 0.95262 0.92850 0.98219 1.21000 0.94860 0.93631 0.87973 1.44410 1.63229 1.07815 1.17817 1.18922 1.05750 0.90939 1.23053 0.89691 1.25263 0.98028 0.96522 0.97936 1.69836 1.33915 1.29883 1.21660 0.86952 0.85918 0.77414 0.78299 1.21657 1.23178 1.19425 1.21429 0.93603 0.87151 0.97383 1.22621 0.98904 0.98800 0.88004 1.19571 0.87300 0.84264 0.75917 1.90729 1.13699 1.87111 1.49438 1.22467 1.02070 0.89755 1.05256 0.85152 1.23145 1.02793 1.00113 0.90681 1.20144 0.99103 0.89391 0.99046 0.85664 1.20296 0.92304 0.94946 1.02922 1.22031 0.94741 0.96990 1.03376 1.70300 1.22407 1.13501 1.14929 1.25014 0.84443 0.97853 1.02531 1.43217 1.10795 1.22355 1.40289 0.74043 0.92133 0.90785 0.90853 0.90174 0.88834 0.90974 0.95316 0.94903 0.91522 0.95168 0.91651 0.92799 0.94885 0.90738 0.91696 0.94659 0.87019 0.87368 0.81467 0.77392 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.46 10.27 59.85 0.61 1.07 16 2 N -0.61 -5.90 2.87 -181.57 -0.52 -6.43 16 3 C 0.12 1.38 5.34 -4.04 -0.02 1.36 16 4 C 0.04 0.61 5.29 -3.82 -0.02 0.58 16 5 N -0.53 -8.97 4.63 -234.32 -1.08 -10.05 16 6 C 0.04 0.64 5.46 -3.70 -0.02 0.62 16 7 C 0.15 3.02 6.69 -3.60 -0.02 3.00 16 8 N -0.61 -14.79 2.82 -172.01 -0.48 -15.28 16 9 C -0.26 -7.30 10.08 -15.06 -0.15 -7.46 16 10 H 0.09 2.54 8.05 -52.49 -0.42 2.12 16 11 C 0.02 0.62 5.24 -17.43 -0.09 0.53 16 12 N -0.91 -28.12 13.97 55.49 0.78 -27.34 16 13 Si 0.88 22.85 24.31 -169.99 -4.13 18.72 16 14 H -0.29 -7.19 6.58 56.52 0.37 -6.82 16 15 H -0.30 -7.95 7.11 56.52 0.40 -7.55 16 16 H -0.27 -6.93 6.61 56.52 0.37 -6.55 16 17 C 0.13 2.96 4.35 -3.60 -0.02 2.94 16 18 C 0.05 0.87 5.62 -3.70 -0.02 0.85 16 19 C 0.54 5.86 7.46 -10.98 -0.08 5.78 16 20 O -0.53 -7.89 15.84 5.57 0.09 -7.80 16 21 C -0.17 -1.26 4.82 -91.73 -0.44 -1.71 16 22 H 0.13 0.74 6.28 -51.93 -0.33 0.42 16 23 C -0.13 -0.74 9.75 -26.73 -0.26 -1.00 16 24 C -0.06 -0.41 5.85 -91.73 -0.54 -0.95 16 25 H 0.13 1.05 7.67 -51.93 -0.40 0.65 16 26 C 0.01 0.08 6.92 -81.60 -0.56 -0.48 16 27 C -0.02 -0.20 10.94 -17.81 -0.19 -0.39 16 28 N -0.49 -4.78 11.25 -14.66 -0.16 -4.95 16 29 C 0.19 1.23 13.04 -90.37 -1.18 0.05 16 30 N -0.56 -3.37 6.15 -10.30 -0.06 -3.44 16 31 H 0.42 1.37 8.96 -40.82 -0.37 1.00 16 32 H 0.06 0.28 8.14 -51.93 -0.42 -0.14 16 33 H 0.07 0.44 8.07 -51.93 -0.42 0.02 16 34 H 0.07 0.33 5.99 -51.93 -0.31 0.02 16 35 H 0.08 0.82 6.33 -51.93 -0.33 0.49 16 36 H 0.09 1.29 7.42 -51.93 -0.39 0.91 16 37 H 0.07 1.08 7.97 -51.93 -0.41 0.67 16 38 H 0.03 0.38 8.12 -51.93 -0.42 -0.04 16 39 H 0.03 0.57 8.14 -51.93 -0.42 0.15 16 40 H 0.07 0.89 6.16 -51.93 -0.32 0.57 16 41 H 0.03 0.60 8.14 -51.93 -0.42 0.18 16 42 H 0.07 1.26 7.95 -51.93 -0.41 0.85 16 43 H 0.26 7.70 8.31 -40.82 -0.34 7.36 16 44 H 0.03 0.77 6.94 -51.93 -0.36 0.41 16 45 H 0.07 1.82 4.61 -51.93 -0.24 1.58 16 46 H 0.06 1.12 7.99 -51.93 -0.41 0.70 16 47 H 0.04 0.69 8.14 -51.93 -0.42 0.26 16 48 H 0.11 0.45 7.94 -51.93 -0.41 0.03 16 49 H 0.11 0.64 8.14 -51.93 -0.42 0.22 16 50 H 0.17 1.07 8.06 -52.48 -0.42 0.65 16 51 H 0.21 0.57 8.06 -52.48 -0.42 0.14 16 LS Contribution 400.85 15.07 6.04 6.04 Total: -1.00 -36.76 400.85 -10.66 -47.42 By element: Atomic # 1 Polarization: 6.40 SS G_CDS: -8.11 Total: -1.70 kcal Atomic # 6 Polarization: 7.81 SS G_CDS: -3.01 Total: 4.80 kcal Atomic # 7 Polarization: -65.93 SS G_CDS: -1.54 Total: -67.48 kcal Atomic # 8 Polarization: -7.89 SS G_CDS: 0.09 Total: -7.80 kcal Atomic # 14 Polarization: 22.85 SS G_CDS: -4.13 Total: 18.72 kcal Total LS contribution 6.04 Total: 6.04 kcal Total: -36.76 -10.66 -47.42 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001481468451.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 147.620 kcal (2) G-P(sol) polarization free energy of solvation -36.760 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 110.860 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -10.663 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -47.423 kcal (6) G-S(sol) free energy of system = (1) + (5) 100.197 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds