Wall clock time and date at job start Wed Apr 1 2020 05:19:47 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47173 * 2 1 4 4 H 1.09001 * 109.47661 * 305.00644 * 3 2 1 5 5 C 1.53004 * 109.46791 * 65.00279 * 3 2 1 6 6 C 1.50698 * 109.47441 * 185.00099 * 3 2 1 7 7 N 1.30300 * 126.34894 * 299.98080 * 6 3 2 8 8 N 1.28525 * 110.05507 * 180.02562 * 7 6 3 9 9 C 1.31221 * 109.85819 * 359.97438 * 8 7 6 10 10 N 1.38577 * 126.46830 * 180.02562 * 9 8 7 11 11 C 1.46896 * 111.00552 * 251.10375 * 10 9 8 12 12 C 1.46905 * 111.00456 * 15.06490 * 10 9 8 13 13 H 1.08996 * 109.47024 * 54.99035 * 12 10 9 14 14 C 1.53000 * 109.46589 * 294.99630 * 12 10 9 15 15 C 1.50693 * 109.47279 * 174.99571 * 12 10 9 16 16 H 1.08002 * 120.00352 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00088 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99613 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 120.00455 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46876 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47085 * 120.00083 * 19 17 15 22 22 H 1.48499 * 109.47563 * 240.00447 * 19 17 15 23 23 N 1.36448 * 107.05793 * 0.02562 * 9 8 7 24 24 C 1.46499 * 127.13810 * 179.97438 * 23 9 8 25 25 C 1.50708 * 109.46810 * 94.33985 * 24 23 9 26 26 C 1.35347 * 126.91169 * 84.91791 * 25 24 23 27 27 N 1.33770 * 106.49624 * 179.97438 * 26 25 24 28 28 N 1.28632 * 108.88685 * 0.02562 * 27 26 25 29 29 N 1.28724 * 110.17773 * 359.75357 * 28 27 26 30 30 C 1.46501 * 125.86954 * 180.24022 * 29 28 27 31 31 H 1.08992 * 109.47042 * 299.99309 * 1 2 3 32 32 H 1.08999 * 109.47382 * 59.99856 * 1 2 3 33 33 H 1.09008 * 109.46881 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47215 * 240.00547 * 2 1 3 35 35 H 1.08995 * 109.47326 * 120.00664 * 2 1 3 36 36 H 1.09002 * 109.47140 * 299.99684 * 5 3 2 37 37 H 1.09004 * 109.47137 * 60.00080 * 5 3 2 38 38 H 1.09001 * 109.46895 * 180.02562 * 5 3 2 39 39 H 1.09005 * 109.46984 * 54.14214 * 11 10 9 40 40 H 1.08996 * 109.47527 * 174.14253 * 11 10 9 41 41 H 1.09004 * 109.47318 * 294.14482 * 11 10 9 42 42 H 1.09003 * 109.47294 * 300.00024 * 14 12 10 43 43 H 1.08997 * 109.47164 * 59.99913 * 14 12 10 44 44 H 1.08995 * 109.47058 * 180.02562 * 14 12 10 45 45 H 0.97004 * 120.00063 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.47060 * 214.33699 * 24 23 9 47 47 H 1.08995 * 109.47486 * 334.34205 * 24 23 9 48 48 H 1.08002 * 126.75286 * 359.97438 * 26 25 24 49 49 H 1.09000 * 109.46998 * 270.17659 * 30 29 28 50 50 H 1.08997 * 109.46853 * 30.17532 * 30 29 28 51 51 H 1.08995 * 109.46770 * 150.17474 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1239 7 7 4.3857 0.8947 0.7030 8 7 5.5897 1.0858 0.2960 9 6 5.5785 1.7729 -0.8219 10 7 6.6849 2.1693 -1.5562 11 6 6.8930 3.6198 -1.4534 12 6 7.8858 1.4341 -1.1374 13 1 7.6981 0.3626 -1.2056 14 6 8.2298 1.8005 0.3077 15 6 9.0382 1.8006 -2.0365 16 1 8.8931 2.5085 -2.8391 17 6 10.2780 1.2322 -1.8345 18 7 10.4547 0.3698 -0.8574 19 14 11.7064 1.6858 -2.9494 20 1 11.2495 2.6694 -3.9639 21 1 12.7975 2.2829 -2.1380 22 1 12.2080 0.4664 -3.6325 23 7 4.2718 2.0234 -1.1247 24 6 3.7576 2.7601 -2.2819 25 6 3.4214 1.7905 -3.3856 26 6 2.2661 1.1022 -3.5390 27 7 2.4061 0.3674 -4.6479 28 7 3.5710 0.5858 -5.1478 29 7 4.2119 1.4367 -4.4252 30 6 5.5656 1.9342 -4.6824 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.5489 2.1251 1.3970 37 1 2.0699 1.5873 2.1492 38 1 1.9982 3.1542 1.3073 39 1 6.9471 3.9055 -0.4028 40 1 7.8241 3.8895 -1.9516 41 1 6.0621 4.1408 -1.9292 42 1 8.4174 2.8721 0.3761 43 1 7.3962 1.5355 0.9581 44 1 9.1210 1.2555 0.6184 45 1 11.3268 -0.0305 -0.7155 46 1 2.8605 3.3084 -1.9942 47 1 4.5151 3.4610 -2.6324 48 1 1.4013 1.1390 -2.8930 49 1 6.2905 1.2870 -4.1886 50 1 5.7536 1.9374 -5.7561 51 1 5.6599 2.9482 -4.2940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001512783232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:47 Heat of formation + Delta-G solvation = 193.037541 kcal Electronic energy + Delta-G solvation = -33052.201226 eV Core-core repulsion = 29026.310685 eV Total energy + Delta-G solvation = -4025.890542 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.08 seconds Orbital eigenvalues (eV) -43.41304 -42.57585 -37.62712 -36.39722 -35.54792 -34.47232 -32.89354 -31.44157 -30.45666 -28.91572 -28.53445 -27.97878 -27.11076 -25.55463 -25.27218 -24.68586 -22.83721 -22.19396 -21.66757 -21.04983 -19.87111 -19.22343 -17.53637 -17.16975 -16.42828 -16.17289 -15.98574 -15.64856 -15.23832 -15.10748 -14.79372 -14.64564 -14.21133 -13.83937 -13.68616 -13.37467 -13.22925 -13.01481 -12.83324 -12.68157 -12.49074 -12.26876 -11.86395 -11.82005 -11.73967 -11.57203 -11.40460 -11.30043 -11.05493 -11.01232 -10.96401 -10.81561 -10.78942 -10.50391 -10.27672 -10.17733 -10.08575 -9.99660 -9.82115 -9.37943 -8.96334 -8.86714 -8.50479 -7.59514 -6.13390 -4.22201 1.31103 2.05972 2.34828 2.40033 2.70615 3.20216 3.28312 3.29776 3.30564 4.06070 4.21064 4.23655 4.33036 4.45200 4.48399 4.63947 4.78015 4.86199 4.87075 5.10609 5.13149 5.18274 5.21605 5.24315 5.36135 5.44932 5.49833 5.59615 5.66201 5.67741 5.72234 5.81019 5.90579 5.95402 5.95830 5.99949 6.02390 6.19586 6.24233 6.30007 6.36887 6.45871 6.72228 6.88751 7.05348 7.23160 7.37692 7.55672 7.62009 7.85419 8.21602 8.33599 8.42252 8.79463 9.26272 9.43354 10.92495 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.004055 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.143609 B = 6903.378142 C = 8427.976605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.115 4.115 3 C 0.006 3.994 4 H 0.079 0.921 5 C -0.142 4.142 6 C 0.165 3.835 7 N -0.282 5.282 8 N -0.307 5.307 9 C 0.380 3.620 10 N -0.459 5.459 11 C 0.032 3.968 12 C 0.231 3.769 13 H 0.047 0.953 14 C -0.179 4.179 15 C -0.517 4.517 16 H 0.064 0.936 17 C 0.066 3.934 18 N -0.880 5.880 19 Si 0.898 3.102 20 H -0.273 1.273 21 H -0.284 1.284 22 H -0.284 1.284 23 N -0.484 5.484 24 C 0.189 3.811 25 C -0.046 4.046 26 C -0.030 4.030 27 N -0.276 5.276 28 N -0.077 5.077 29 N -0.263 5.263 30 C 0.076 3.924 31 H 0.058 0.942 32 H 0.053 0.947 33 H 0.057 0.943 34 H 0.063 0.937 35 H 0.076 0.924 36 H 0.066 0.934 37 H 0.069 0.931 38 H 0.053 0.947 39 H 0.035 0.965 40 H 0.099 0.901 41 H 0.042 0.958 42 H 0.020 0.980 43 H 0.053 0.947 44 H 0.087 0.913 45 H 0.263 0.737 46 H 0.116 0.884 47 H 0.110 0.890 48 H 0.186 0.814 49 H 0.115 0.885 50 H 0.099 0.901 51 H 0.098 0.902 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.400 8.328 -1.969 19.390 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.153 4.153 3 C -0.015 4.015 4 H 0.097 0.903 5 C -0.200 4.200 6 C -0.102 4.102 7 N -0.120 5.120 8 N -0.150 5.150 9 C 0.024 3.976 10 N -0.184 5.184 11 C -0.115 4.115 12 C 0.127 3.873 13 H 0.064 0.936 14 C -0.238 4.238 15 C -0.556 4.556 16 H 0.082 0.918 17 C -0.138 4.138 18 N -0.518 5.518 19 Si 0.725 3.275 20 H -0.198 1.198 21 H -0.210 1.210 22 H -0.210 1.210 23 N -0.181 5.181 24 C 0.063 3.937 25 C -0.180 4.180 26 C -0.189 4.189 27 N -0.140 5.140 28 N -0.057 5.057 29 N -0.057 5.057 30 C -0.064 4.064 31 H 0.077 0.923 32 H 0.072 0.928 33 H 0.076 0.924 34 H 0.082 0.918 35 H 0.094 0.906 36 H 0.085 0.915 37 H 0.088 0.912 38 H 0.072 0.928 39 H 0.054 0.946 40 H 0.118 0.882 41 H 0.061 0.939 42 H 0.039 0.961 43 H 0.071 0.929 44 H 0.106 0.894 45 H 0.073 0.927 46 H 0.134 0.866 47 H 0.128 0.872 48 H 0.203 0.797 49 H 0.133 0.867 50 H 0.118 0.882 51 H 0.117 0.883 Dipole moment (debyes) X Y Z Total from point charges -16.665 6.442 -2.476 18.038 hybrid contribution 0.844 1.745 -0.127 1.942 sum -15.821 8.187 -2.602 18.003 Atomic orbital electron populations 1.21825 0.95235 1.02002 1.01795 1.21538 0.95657 0.94620 1.03480 1.19522 0.84102 0.98233 0.99616 0.90322 1.21844 1.01258 1.00279 0.96592 1.24530 0.96560 1.00482 0.88627 1.73960 0.95935 1.18544 1.23595 1.74916 1.12342 1.20021 1.07733 1.23273 0.84022 0.98634 0.91647 1.59461 1.03271 1.06614 1.49051 1.22414 1.02344 0.85908 1.00829 1.19346 0.82129 0.93270 0.92564 0.93561 1.22547 1.03480 0.98906 0.98882 1.21005 0.93202 1.26669 1.14708 0.91795 1.24893 0.98631 0.94875 0.95365 1.69932 1.23650 1.28346 1.29864 0.86462 0.82276 0.78289 0.80443 1.19758 1.21019 1.20967 1.46273 1.06454 1.44845 1.20547 1.19983 1.02098 0.90628 0.80955 1.22110 0.93664 1.06852 0.95352 1.23332 0.98952 0.98357 0.98286 1.75103 1.09198 1.20501 1.09150 1.78332 1.01281 1.07329 1.18742 1.47322 1.14723 1.27415 1.16280 1.22517 0.77061 1.02081 1.04749 0.92270 0.92772 0.92439 0.91818 0.90560 0.91540 0.91203 0.92797 0.94638 0.88241 0.93919 0.96131 0.92855 0.89443 0.92730 0.86568 0.87186 0.79691 0.86714 0.88222 0.88320 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.14 9.67 37.16 0.36 -0.78 16 2 C -0.11 -1.18 5.38 -26.73 -0.14 -1.33 16 3 C 0.01 0.06 2.76 -91.77 -0.25 -0.19 16 4 H 0.08 0.62 6.40 -51.93 -0.33 0.29 16 5 C -0.14 -1.29 8.93 37.16 0.33 -0.96 16 6 C 0.17 2.46 6.58 -154.01 -1.01 1.45 16 7 N -0.28 -5.40 12.18 32.99 0.40 -5.00 16 8 N -0.31 -6.62 8.95 30.31 0.27 -6.35 16 9 C 0.38 7.11 6.66 -318.88 -2.12 4.99 16 10 N -0.46 -8.60 4.76 -176.09 -0.84 -9.43 16 11 C 0.03 0.51 8.52 60.06 0.51 1.03 16 12 C 0.23 5.45 2.09 -68.87 -0.14 5.31 16 13 H 0.05 1.29 8.11 -51.93 -0.42 0.87 16 14 C -0.18 -4.32 8.28 37.16 0.31 -4.01 16 15 C -0.52 -12.65 7.80 -34.44 -0.27 -12.91 16 16 H 0.06 1.48 6.82 -52.49 -0.36 1.12 16 17 C 0.07 1.69 5.30 -17.82 -0.09 1.59 16 18 N -0.88 -24.21 11.32 55.43 0.63 -23.58 16 19 Si 0.90 19.86 29.54 -169.99 -5.02 14.83 16 20 H -0.27 -5.81 7.11 56.52 0.40 -5.41 16 21 H -0.28 -6.34 7.11 56.52 0.40 -5.94 16 22 H -0.28 -6.38 7.11 56.52 0.40 -5.98 16 23 N -0.48 -7.07 2.79 -115.36 -0.32 -7.40 16 24 C 0.19 1.98 6.10 -5.19 -0.03 1.95 16 25 C -0.05 -0.56 6.58 -82.09 -0.54 -1.10 16 26 C -0.03 -0.37 11.99 -17.74 -0.21 -0.58 16 27 N -0.28 -4.27 12.41 30.23 0.38 -3.90 16 28 N -0.08 -1.22 13.17 60.35 0.79 -0.42 16 29 N -0.26 -3.59 3.74 -63.79 -0.24 -3.83 16 30 C 0.08 0.89 11.21 59.85 0.67 1.56 16 31 H 0.06 0.39 6.56 -51.93 -0.34 0.05 16 32 H 0.05 0.35 8.14 -51.93 -0.42 -0.07 16 33 H 0.06 0.43 8.14 -51.92 -0.42 0.01 16 34 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 35 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 36 H 0.07 0.45 6.57 -51.93 -0.34 0.11 16 37 H 0.07 0.75 8.14 -51.93 -0.42 0.33 16 38 H 0.05 0.49 8.14 -51.93 -0.42 0.06 16 39 H 0.03 0.60 6.82 -51.93 -0.35 0.25 16 40 H 0.10 1.64 6.28 -51.93 -0.33 1.32 16 41 H 0.04 0.51 6.08 -51.93 -0.32 0.20 16 42 H 0.02 0.46 6.61 -51.93 -0.34 0.12 16 43 H 0.05 1.29 5.38 -51.93 -0.28 1.01 16 44 H 0.09 2.36 6.07 -51.93 -0.32 2.05 16 45 H 0.26 6.92 8.31 -40.82 -0.34 6.58 16 46 H 0.12 0.81 7.43 -51.93 -0.39 0.43 16 47 H 0.11 1.04 4.79 -51.93 -0.25 0.79 16 48 H 0.19 1.69 7.41 -52.49 -0.39 1.30 16 49 H 0.11 1.65 8.14 -51.93 -0.42 1.23 16 50 H 0.10 0.95 8.14 -51.93 -0.42 0.53 16 51 H 0.10 0.93 7.04 -51.93 -0.37 0.57 16 LS Contribution 399.82 15.07 6.03 6.03 Total: -1.00 -32.24 399.82 -8.20 -40.44 By element: Atomic # 1 Polarization: 10.24 SS G_CDS: -7.63 Total: 2.61 kcal Atomic # 6 Polarization: -1.35 SS G_CDS: -2.64 Total: -4.00 kcal Atomic # 7 Polarization: -60.99 SS G_CDS: 1.07 Total: -59.92 kcal Atomic # 14 Polarization: 19.86 SS G_CDS: -5.02 Total: 14.83 kcal Total LS contribution 6.03 Total: 6.03 kcal Total: -32.24 -8.20 -40.44 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512783232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 233.481 kcal (2) G-P(sol) polarization free energy of solvation -32.244 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 201.237 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.200 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -40.443 kcal (6) G-S(sol) free energy of system = (1) + (5) 193.038 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.08 seconds