Wall clock time and date at job start Wed Apr 1 2020 05:19:46 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 C 1.52995 * 109.47173 * 2 1 4 4 H 1.09001 * 109.47661 * 305.00644 * 3 2 1 5 5 C 1.53004 * 109.46791 * 65.00279 * 3 2 1 6 6 C 1.50698 * 109.47441 * 185.00099 * 3 2 1 7 7 N 1.30300 * 126.34894 * 299.98080 * 6 3 2 8 8 N 1.28525 * 110.05507 * 180.02562 * 7 6 3 9 9 C 1.31221 * 109.85819 * 359.97438 * 8 7 6 10 10 N 1.38577 * 126.46830 * 180.02562 * 9 8 7 11 11 C 1.46896 * 111.00552 * 251.10375 * 10 9 8 12 12 C 1.46905 * 111.00456 * 15.06490 * 10 9 8 13 13 H 1.08996 * 109.47024 * 54.99035 * 12 10 9 14 14 C 1.53000 * 109.46589 * 294.99630 * 12 10 9 15 15 C 1.50693 * 109.47279 * 174.99571 * 12 10 9 16 16 H 1.08002 * 120.00352 * 359.97438 * 15 12 10 17 17 C 1.37878 * 120.00088 * 179.97438 * 15 12 10 18 18 N 1.31517 * 119.99613 * 0.02562 * 17 15 12 19 19 Si 1.86794 * 120.00455 * 179.97438 * 17 15 12 20 20 H 1.48509 * 109.46876 * 0.02562 * 19 17 15 21 21 H 1.48505 * 109.47085 * 120.00083 * 19 17 15 22 22 H 1.48499 * 109.47563 * 240.00447 * 19 17 15 23 23 N 1.36448 * 107.05793 * 0.02562 * 9 8 7 24 24 C 1.46499 * 127.13810 * 179.97438 * 23 9 8 25 25 C 1.50708 * 109.46810 * 94.33985 * 24 23 9 26 26 C 1.35347 * 126.91169 * 84.91791 * 25 24 23 27 27 N 1.33770 * 106.49624 * 179.97438 * 26 25 24 28 28 N 1.28632 * 108.88685 * 0.02562 * 27 26 25 29 29 N 1.28724 * 110.17773 * 359.75357 * 28 27 26 30 30 C 1.46501 * 125.86954 * 180.24022 * 29 28 27 31 31 H 1.08992 * 109.47042 * 299.99309 * 1 2 3 32 32 H 1.08999 * 109.47382 * 59.99856 * 1 2 3 33 33 H 1.09008 * 109.46881 * 179.97438 * 1 2 3 34 34 H 1.09005 * 109.47215 * 240.00547 * 2 1 3 35 35 H 1.08995 * 109.47326 * 120.00664 * 2 1 3 36 36 H 1.09002 * 109.47140 * 299.99684 * 5 3 2 37 37 H 1.09004 * 109.47137 * 60.00080 * 5 3 2 38 38 H 1.09001 * 109.46895 * 180.02562 * 5 3 2 39 39 H 1.09005 * 109.46984 * 54.14214 * 11 10 9 40 40 H 1.08996 * 109.47527 * 174.14253 * 11 10 9 41 41 H 1.09004 * 109.47318 * 294.14482 * 11 10 9 42 42 H 1.09003 * 109.47294 * 300.00024 * 14 12 10 43 43 H 1.08997 * 109.47164 * 59.99913 * 14 12 10 44 44 H 1.08995 * 109.47058 * 180.02562 * 14 12 10 45 45 H 0.97004 * 120.00063 * 179.97438 * 18 17 15 46 46 H 1.09002 * 109.47060 * 214.33699 * 24 23 9 47 47 H 1.08995 * 109.47486 * 334.34205 * 24 23 9 48 48 H 1.08002 * 126.75286 * 359.97438 * 26 25 24 49 49 H 1.09000 * 109.46998 * 270.17659 * 30 29 28 50 50 H 1.08997 * 109.46853 * 30.17532 * 30 29 28 51 51 H 1.08995 * 109.46770 * 150.17474 * 30 29 28 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6053 1.9816 -0.8417 5 6 1.6353 2.1264 1.3074 6 6 3.5419 1.4443 -0.1239 7 7 4.3857 0.8947 0.7030 8 7 5.5897 1.0858 0.2960 9 6 5.5785 1.7729 -0.8219 10 7 6.6849 2.1693 -1.5562 11 6 6.8930 3.6198 -1.4534 12 6 7.8858 1.4341 -1.1374 13 1 7.6981 0.3626 -1.2056 14 6 8.2298 1.8005 0.3077 15 6 9.0382 1.8006 -2.0365 16 1 8.8931 2.5085 -2.8391 17 6 10.2780 1.2322 -1.8345 18 7 10.4547 0.3698 -0.8574 19 14 11.7064 1.6858 -2.9494 20 1 11.2495 2.6694 -3.9639 21 1 12.7975 2.2829 -2.1380 22 1 12.2080 0.4664 -3.6325 23 7 4.2718 2.0234 -1.1247 24 6 3.7576 2.7601 -2.2819 25 6 3.4214 1.7905 -3.3856 26 6 2.2661 1.1022 -3.5390 27 7 2.4061 0.3674 -4.6479 28 7 3.5710 0.5858 -5.1478 29 7 4.2119 1.4367 -4.4252 30 6 5.5656 1.9342 -4.6824 31 1 -0.3633 0.5137 0.8900 32 1 -0.3634 0.5138 -0.8899 33 1 -0.3633 -1.0278 -0.0005 34 1 1.8934 -0.5138 -0.8901 35 1 1.8934 -0.5139 0.8899 36 1 0.5489 2.1251 1.3970 37 1 2.0699 1.5873 2.1492 38 1 1.9982 3.1542 1.3073 39 1 6.9471 3.9055 -0.4028 40 1 7.8241 3.8895 -1.9516 41 1 6.0621 4.1408 -1.9292 42 1 8.4174 2.8721 0.3761 43 1 7.3962 1.5355 0.9581 44 1 9.1210 1.2555 0.6184 45 1 11.3268 -0.0305 -0.7155 46 1 2.8605 3.3084 -1.9942 47 1 4.5151 3.4610 -2.6324 48 1 1.4013 1.1390 -2.8930 49 1 6.2905 1.2870 -4.1886 50 1 5.7536 1.9374 -5.7561 51 1 5.6599 2.9482 -4.2940 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001512783232.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:46 Heat of formation + Delta-G solvation = 173.723450 kcal Electronic energy + Delta-G solvation = -33053.038748 eV Core-core repulsion = 29026.310685 eV Total energy + Delta-G solvation = -4026.728064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -44.46114 -43.85665 -39.14353 -37.36746 -36.64296 -35.49980 -34.74167 -32.54365 -31.51128 -30.60824 -29.65792 -28.96595 -28.12452 -27.24498 -26.77392 -25.69357 -23.92671 -23.38031 -22.96872 -22.18259 -21.14979 -20.43359 -18.62067 -18.32676 -18.05974 -17.38756 -17.19459 -17.10407 -16.53173 -16.24794 -15.93799 -15.70277 -15.26254 -15.23427 -14.92484 -14.53034 -14.26184 -14.17187 -13.94454 -13.59938 -13.57506 -13.38002 -13.11936 -12.97372 -12.93695 -12.88328 -12.72532 -12.55080 -12.53240 -12.34244 -12.11743 -12.06649 -12.00591 -11.88477 -11.72377 -11.56824 -11.37408 -11.19440 -11.11967 -10.78784 -10.49665 -10.39680 -10.36597 -9.09676 -8.10585 -6.25436 0.27889 0.84110 1.28404 1.42946 1.44933 1.46849 1.57068 1.62163 1.94886 2.42237 3.02926 3.16302 3.20576 3.34855 3.37886 3.58761 3.79691 3.94424 4.02213 4.07688 4.13076 4.17939 4.29812 4.35521 4.44534 4.57685 4.58850 4.63922 4.69918 4.70534 4.73015 4.79628 4.85916 4.97078 5.03106 5.07202 5.09885 5.16014 5.17543 5.24567 5.26438 5.32995 5.44911 5.47186 5.54004 5.57239 5.65270 5.66677 5.86823 6.06194 6.24799 6.60526 6.85924 7.38516 7.44265 7.91172 8.95997 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011916 B = 0.004055 C = 0.003321 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2349.143609 B = 6903.378142 C = 8427.976605 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.145 4.145 2 C -0.111 4.111 3 C 0.007 3.993 4 H 0.119 0.881 5 C -0.137 4.137 6 C 0.191 3.809 7 N -0.330 5.330 8 N -0.363 5.363 9 C 0.366 3.634 10 N -0.448 5.448 11 C 0.032 3.968 12 C 0.246 3.754 13 H -0.010 1.010 14 C -0.162 4.162 15 C -0.514 4.514 16 H 0.083 0.917 17 C 0.011 3.989 18 N -0.922 5.922 19 Si 0.964 3.036 20 H -0.251 1.251 21 H -0.287 1.287 22 H -0.291 1.291 23 N -0.475 5.475 24 C 0.182 3.818 25 C -0.046 4.046 26 C -0.026 4.026 27 N -0.305 5.305 28 N -0.112 5.112 29 N -0.265 5.265 30 C 0.074 3.926 31 H 0.073 0.927 32 H 0.074 0.926 33 H 0.054 0.946 34 H 0.042 0.958 35 H 0.051 0.949 36 H 0.098 0.902 37 H 0.044 0.956 38 H 0.058 0.942 39 H 0.021 0.979 40 H 0.095 0.905 41 H 0.092 0.908 42 H 0.028 0.972 43 H 0.048 0.952 44 H 0.053 0.947 45 H 0.259 0.741 46 H 0.167 0.833 47 H 0.126 0.874 48 H 0.220 0.780 49 H 0.082 0.918 50 H 0.117 0.883 51 H 0.125 0.875 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.183 11.597 -3.462 23.534 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C -0.150 4.150 3 C -0.014 4.014 4 H 0.137 0.863 5 C -0.195 4.195 6 C -0.078 4.078 7 N -0.167 5.167 8 N -0.205 5.205 9 C 0.008 3.992 10 N -0.172 5.172 11 C -0.115 4.115 12 C 0.140 3.860 13 H 0.008 0.992 14 C -0.222 4.222 15 C -0.552 4.552 16 H 0.101 0.899 17 C -0.188 4.188 18 N -0.561 5.561 19 Si 0.789 3.211 20 H -0.174 1.174 21 H -0.213 1.213 22 H -0.217 1.217 23 N -0.171 5.171 24 C 0.058 3.942 25 C -0.180 4.180 26 C -0.186 4.186 27 N -0.168 5.168 28 N -0.092 5.092 29 N -0.060 5.060 30 C -0.066 4.066 31 H 0.092 0.908 32 H 0.093 0.907 33 H 0.073 0.927 34 H 0.061 0.939 35 H 0.070 0.930 36 H 0.117 0.883 37 H 0.063 0.937 38 H 0.077 0.923 39 H 0.040 0.960 40 H 0.113 0.887 41 H 0.110 0.890 42 H 0.047 0.953 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.068 0.932 46 H 0.185 0.815 47 H 0.144 0.856 48 H 0.236 0.764 49 H 0.101 0.899 50 H 0.135 0.865 51 H 0.143 0.857 Dipole moment (debyes) X Y Z Total from point charges -19.479 9.733 -4.001 22.140 hybrid contribution 1.572 0.696 0.389 1.763 sum -17.907 10.429 -3.613 21.035 Atomic orbital electron populations 1.21797 0.92399 1.02511 1.03501 1.21481 0.97975 0.94218 1.01314 1.19882 0.80715 0.98793 1.01984 0.86349 1.21834 1.03178 0.99832 0.94698 1.25487 0.98120 0.97276 0.86950 1.73859 0.95900 1.21190 1.25777 1.74743 1.14253 1.21657 1.09892 1.23172 0.85424 0.99016 0.91559 1.59319 1.01613 1.07785 1.48493 1.22535 1.04308 0.84123 1.00498 1.18841 0.84193 0.90832 0.92145 0.99200 1.22344 1.01646 0.98682 0.99511 1.21360 0.93142 1.26073 1.14664 0.89931 1.25773 1.01545 0.94874 0.96644 1.70115 1.23983 1.30024 1.31996 0.85417 0.78812 0.77984 0.78845 1.17392 1.21305 1.21726 1.46381 1.04653 1.44644 1.21394 1.20564 1.04712 0.89946 0.78937 1.22469 0.93379 1.06937 0.95232 1.23928 1.00028 0.97079 0.97555 1.75061 1.09435 1.21622 1.10668 1.78301 1.01971 1.08728 1.20169 1.47527 1.15123 1.26857 1.16476 1.22615 0.75646 1.02450 1.05843 0.90838 0.90680 0.92702 0.93885 0.93042 0.88300 0.93691 0.92271 0.96034 0.88678 0.88984 0.95250 0.93361 0.92791 0.93164 0.81545 0.85582 0.76398 0.89912 0.86485 0.85669 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 14. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -1.66 9.67 71.98 0.70 -0.96 16 2 C -0.11 -2.09 5.38 30.59 0.16 -1.92 16 3 C 0.01 0.12 2.76 -11.54 -0.03 0.09 16 4 H 0.12 1.13 6.40 -2.39 -0.02 1.11 16 5 C -0.14 -2.04 8.93 71.98 0.64 -1.40 16 6 C 0.19 5.38 6.58 137.64 0.91 6.28 16 7 N -0.33 -12.95 12.18 -49.53 -0.60 -13.56 16 8 N -0.36 -16.28 8.95 -58.01 -0.52 -16.80 16 9 C 0.37 13.66 6.66 260.11 1.73 15.39 16 10 N -0.45 -16.66 4.76 -711.01 -3.38 -20.04 16 11 C 0.03 0.94 8.52 127.69 1.09 2.03 16 12 C 0.25 12.07 2.09 44.17 0.09 12.16 16 13 H -0.01 -0.60 8.11 -2.39 -0.02 -0.62 16 14 C -0.16 -8.24 8.28 71.98 0.60 -7.64 16 15 C -0.51 -25.38 7.80 25.60 0.20 -25.18 16 16 H 0.08 3.69 6.82 -2.91 -0.02 3.67 16 17 C 0.01 0.56 5.30 84.65 0.45 1.01 16 18 N -0.92 -53.07 11.32 21.45 0.24 -52.83 16 19 Si 0.96 40.96 29.54 68.60 2.03 42.99 16 20 H -0.25 -9.66 7.11 99.48 0.71 -8.95 16 21 H -0.29 -12.24 7.11 99.48 0.71 -11.54 16 22 H -0.29 -12.62 7.11 99.48 0.71 -11.91 16 23 N -0.47 -12.80 2.79 -518.90 -1.45 -14.25 16 24 C 0.18 2.98 6.10 85.64 0.52 3.50 16 25 C -0.05 -0.98 6.58 41.36 0.27 -0.71 16 26 C -0.03 -0.56 11.99 83.73 1.00 0.44 16 27 N -0.30 -9.00 12.41 -58.26 -0.72 -9.72 16 28 N -0.11 -3.47 13.17 37.02 0.49 -2.98 16 29 N -0.27 -6.78 3.74 -355.73 -1.33 -8.11 16 30 C 0.07 1.60 11.21 127.77 1.43 3.03 16 31 H 0.07 0.65 6.56 -2.39 -0.02 0.64 16 32 H 0.07 0.58 8.14 -2.39 -0.02 0.56 16 33 H 0.05 0.68 8.14 -2.38 -0.02 0.66 16 34 H 0.04 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.05 1.21 8.14 -2.39 -0.02 1.19 16 36 H 0.10 0.86 6.57 -2.39 -0.02 0.84 16 37 H 0.04 0.91 8.14 -2.38 -0.02 0.89 16 38 H 0.06 0.84 8.14 -2.39 -0.02 0.82 16 39 H 0.02 0.69 6.82 -2.38 -0.02 0.68 16 40 H 0.09 2.92 6.28 -2.39 -0.02 2.90 16 41 H 0.09 1.80 6.08 -2.38 -0.01 1.78 16 42 H 0.03 1.37 6.61 -2.39 -0.02 1.35 16 43 H 0.05 2.49 5.38 -2.39 -0.01 2.47 16 44 H 0.05 3.09 6.07 -2.39 -0.01 3.07 16 45 H 0.26 14.32 8.31 -92.70 -0.77 13.55 16 46 H 0.17 1.14 7.43 -2.39 -0.02 1.13 16 47 H 0.13 1.70 4.79 -2.39 -0.01 1.69 16 48 H 0.22 2.89 7.41 -2.91 -0.02 2.87 16 49 H 0.08 2.37 8.14 -2.39 -0.02 2.36 16 50 H 0.12 2.04 8.14 -2.39 -0.02 2.03 16 51 H 0.13 1.93 7.04 -2.39 -0.02 1.92 16 Total: -1.00 -78.50 399.82 5.46 -73.04 By element: Atomic # 1 Polarization: 15.17 SS G_CDS: 0.95 Total: 16.12 kcal Atomic # 6 Polarization: -3.62 SS G_CDS: 9.76 Total: 6.14 kcal Atomic # 7 Polarization: -131.00 SS G_CDS: -7.28 Total: -138.28 kcal Atomic # 14 Polarization: 40.96 SS G_CDS: 2.03 Total: 42.99 kcal Total: -78.50 5.46 -73.04 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001512783232.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 246.761 kcal (2) G-P(sol) polarization free energy of solvation -78.501 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 168.260 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.463 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -73.038 kcal (6) G-S(sol) free energy of system = (1) + (5) 173.723 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds