Wall clock time and date at job start Wed Apr 1 2020 05:23:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47418 * 2 1 4 4 H 1.08999 * 109.46917 * 55.00030 * 3 2 1 5 5 C 1.53011 * 109.47008 * 295.00244 * 3 2 1 6 6 C 1.50696 * 109.47405 * 175.00541 * 3 2 1 7 7 N 1.30299 * 126.35325 * 60.15119 * 6 3 2 8 8 N 1.28519 * 110.05645 * 180.31309 * 7 6 3 9 9 C 1.31218 * 109.85960 * 359.72202 * 8 7 6 10 10 N 1.38586 * 126.47378 * 180.02562 * 9 8 7 11 11 C 1.46909 * 110.99703 * 307.16430 * 10 9 8 12 12 C 1.46895 * 111.00357 * 71.11936 * 10 9 8 13 13 H 1.08995 * 109.46894 * 54.99838 * 12 10 9 14 14 C 1.53006 * 109.47194 * 295.00297 * 12 10 9 15 15 C 1.50699 * 109.47433 * 175.00240 * 12 10 9 16 16 H 1.07999 * 119.99875 * 5.46472 * 15 12 10 17 17 C 1.37874 * 119.99961 * 185.46378 * 15 12 10 18 18 N 1.31514 * 120.00473 * 9.76886 * 17 15 12 19 19 Si 1.86801 * 119.99788 * 189.77260 * 17 15 12 20 20 H 1.48503 * 109.47108 * 94.99277 * 19 17 15 21 21 H 1.48504 * 109.47123 * 214.99112 * 19 17 15 22 22 H 1.48505 * 109.47374 * 334.99000 * 19 17 15 23 23 N 1.36453 * 107.05653 * 359.97438 * 9 8 7 24 24 C 1.46497 * 127.13758 * 180.02562 * 23 9 8 25 25 C 1.53002 * 109.47561 * 85.67488 * 24 23 9 26 26 N 1.46497 * 109.46891 * 179.97438 * 25 24 23 27 27 C 1.34436 * 126.81971 * 125.00624 * 26 25 24 28 28 N 1.30830 * 108.07450 * 179.97438 * 27 26 25 29 29 C 1.33239 * 109.83302 * 359.97438 * 28 27 26 30 30 N 1.30714 * 108.94424 * 0.26509 * 29 28 27 31 31 H 1.09003 * 109.46743 * 299.99790 * 1 2 3 32 32 H 1.08996 * 109.46954 * 59.99635 * 1 2 3 33 33 H 1.08997 * 109.46658 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47070 * 239.99780 * 2 1 3 35 35 H 1.09002 * 109.47805 * 120.00231 * 2 1 3 36 36 H 1.09000 * 109.46786 * 60.00041 * 5 3 2 37 37 H 1.09002 * 109.46862 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.47106 * 299.99670 * 5 3 2 39 39 H 1.09001 * 109.46940 * 62.36206 * 11 10 9 40 40 H 1.08997 * 109.46875 * 182.35989 * 11 10 9 41 41 H 1.08995 * 109.47353 * 302.36332 * 11 10 9 42 42 H 1.08998 * 109.47072 * 182.78681 * 14 12 10 43 43 H 1.09001 * 109.46756 * 302.78925 * 14 12 10 44 44 H 1.08998 * 109.46907 * 62.78262 * 14 12 10 45 45 H 0.96994 * 120.00479 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47321 * 325.67012 * 24 23 9 47 47 H 1.09005 * 109.46924 * 205.67493 * 24 23 9 48 48 H 1.08999 * 109.47121 * 59.99978 * 25 24 23 49 49 H 1.08999 * 109.46739 * 300.00312 * 25 24 23 50 50 H 1.08003 * 125.96178 * 359.96332 * 27 26 25 51 51 H 1.07996 * 125.53045 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5420 1.4442 0.1237 7 7 4.3858 0.8967 -0.7045 8 7 5.5894 1.0810 -0.2934 9 6 5.5783 1.7668 0.8252 10 7 6.6845 2.1574 1.5631 11 6 7.5506 1.0088 1.8614 12 6 7.4326 3.2150 0.8707 13 1 6.7634 4.0454 0.6454 14 6 8.0132 2.6601 -0.4316 15 6 8.5534 3.6986 1.7545 16 1 8.7511 3.2051 2.6946 17 6 9.3264 4.7710 1.3628 18 7 8.9724 5.4912 0.3209 19 14 10.8766 5.2010 2.3122 20 1 12.0499 4.5696 1.6563 21 1 11.0534 6.6754 2.3298 22 1 10.7591 4.6999 3.7052 23 7 4.2720 2.0238 1.1242 24 6 3.7580 2.7618 2.2806 25 6 3.7498 4.2594 1.9675 26 7 3.2352 4.9972 3.1237 27 6 3.8441 6.0051 3.7724 28 7 3.0602 6.3942 4.7449 29 6 1.9469 5.6621 4.7486 30 7 2.0097 4.7894 3.7775 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8935 -0.5139 0.8899 36 1 0.5489 2.1253 -1.3969 37 1 1.9983 3.1543 -1.3072 38 1 2.0699 1.5875 -2.1492 39 1 7.9268 0.5859 0.9299 40 1 8.3888 1.3360 2.4766 41 1 6.9787 0.2525 2.3990 42 1 8.6093 3.4304 -0.9209 43 1 8.6433 1.7987 -0.2104 44 1 7.2005 2.3560 -1.0912 45 1 9.5160 6.2458 0.0456 46 1 4.3963 2.5746 3.1441 47 1 2.7429 2.4311 2.5007 48 1 3.1115 4.4466 1.1040 49 1 4.7649 4.5900 1.7473 50 1 4.8115 6.4210 3.5325 51 1 1.1274 5.7696 5.4437 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001545311254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:26 Heat of formation + Delta-G solvation = 177.690251 kcal Electronic energy + Delta-G solvation = -32199.664828 eV Core-core repulsion = 28173.108778 eV Total energy + Delta-G solvation = -4026.556050 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 7.16 seconds Orbital eigenvalues (eV) -42.72237 -42.07053 -37.54582 -36.45792 -35.99353 -33.44647 -32.87810 -31.25380 -30.52692 -29.32656 -28.94415 -28.24140 -25.63723 -25.35044 -24.88258 -24.55771 -22.21950 -21.99912 -21.77672 -21.32230 -19.72472 -19.34385 -17.69342 -16.67896 -16.44902 -16.04236 -15.84824 -15.51962 -15.18537 -14.93659 -14.85187 -14.57204 -14.37330 -14.02219 -13.82446 -13.64565 -13.33891 -12.99883 -12.71447 -12.42828 -12.40634 -12.24448 -11.88141 -11.69485 -11.62771 -11.52195 -11.36045 -11.18969 -11.04410 -10.97907 -10.90209 -10.84173 -10.64981 -10.34307 -10.24195 -10.17143 -10.07258 -10.02033 -9.84324 -9.63275 -9.08287 -8.57193 -8.53154 -7.84536 -6.22631 -4.24658 1.53515 1.93244 2.10408 2.66969 2.92468 3.20894 3.21622 3.29425 3.31427 4.17149 4.25178 4.31098 4.34162 4.47910 4.52099 4.61830 4.79898 4.83263 4.95049 5.00536 5.08548 5.12672 5.20585 5.33372 5.34953 5.45332 5.54263 5.63012 5.69425 5.72658 5.84363 5.89258 5.91755 6.02944 6.12656 6.19322 6.25219 6.28500 6.33561 6.34946 6.48108 6.68187 6.69128 6.86129 6.88909 6.96840 7.34875 7.43694 7.64431 7.75000 8.01028 8.01376 8.32482 8.78479 9.13797 9.39756 10.86744 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008134 B = 0.004384 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.403438 B = 6385.584670 C = 9012.857348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.112 4.112 3 C 0.003 3.997 4 H 0.082 0.918 5 C -0.141 4.141 6 C 0.168 3.832 7 N -0.285 5.285 8 N -0.311 5.311 9 C 0.375 3.625 10 N -0.470 5.470 11 C 0.045 3.955 12 C 0.225 3.775 13 H 0.041 0.959 14 C -0.167 4.167 15 C -0.512 4.512 16 H 0.067 0.933 17 C 0.068 3.932 18 N -0.886 5.886 19 Si 0.895 3.105 20 H -0.280 1.280 21 H -0.286 1.286 22 H -0.272 1.272 23 N -0.472 5.472 24 C 0.112 3.888 25 C 0.118 3.882 26 N -0.375 5.375 27 C 0.273 3.727 28 N -0.550 5.550 29 C 0.198 3.802 30 N -0.327 5.327 31 H 0.053 0.947 32 H 0.059 0.941 33 H 0.056 0.944 34 H 0.076 0.924 35 H 0.061 0.939 36 H 0.066 0.934 37 H 0.054 0.946 38 H 0.069 0.931 39 H 0.044 0.956 40 H 0.088 0.912 41 H 0.043 0.957 42 H 0.069 0.931 43 H 0.036 0.964 44 H 0.035 0.965 45 H 0.263 0.737 46 H 0.107 0.893 47 H 0.101 0.899 48 H 0.091 0.909 49 H 0.123 0.877 50 H 0.224 0.776 51 H 0.215 0.785 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -15.591 -4.177 3.279 16.470 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C -0.150 4.150 3 C -0.018 4.018 4 H 0.100 0.900 5 C -0.199 4.199 6 C -0.100 4.100 7 N -0.124 5.124 8 N -0.154 5.154 9 C 0.020 3.980 10 N -0.197 5.197 11 C -0.102 4.102 12 C 0.120 3.880 13 H 0.059 0.941 14 C -0.226 4.226 15 C -0.551 4.551 16 H 0.085 0.915 17 C -0.135 4.135 18 N -0.524 5.524 19 Si 0.722 3.278 20 H -0.206 1.206 21 H -0.212 1.212 22 H -0.197 1.197 23 N -0.167 5.167 24 C -0.013 4.013 25 C -0.006 4.006 26 N -0.165 5.165 27 C -0.024 4.024 28 N -0.278 5.278 29 C -0.105 4.105 30 N -0.155 5.155 31 H 0.073 0.927 32 H 0.078 0.922 33 H 0.075 0.925 34 H 0.094 0.906 35 H 0.079 0.921 36 H 0.085 0.915 37 H 0.073 0.927 38 H 0.088 0.912 39 H 0.062 0.938 40 H 0.107 0.893 41 H 0.062 0.938 42 H 0.087 0.913 43 H 0.055 0.945 44 H 0.054 0.946 45 H 0.073 0.927 46 H 0.125 0.875 47 H 0.119 0.881 48 H 0.109 0.891 49 H 0.141 0.859 50 H 0.240 0.760 51 H 0.232 0.768 Dipole moment (debyes) X Y Z Total from point charges -15.595 -4.877 2.430 16.519 hybrid contribution 1.053 0.881 0.789 1.584 sum -14.542 -3.996 3.219 15.421 Atomic orbital electron populations 1.21828 0.95261 1.01849 1.02010 1.21513 0.95716 0.94613 1.03160 1.19563 0.83984 0.98264 1.00025 0.89965 1.21836 1.01307 1.00416 0.96380 1.24621 0.96673 1.00229 0.88434 1.73927 0.95775 1.19628 1.23105 1.74788 1.13238 1.18647 1.08721 1.22980 0.85280 0.97490 0.92274 1.59466 1.05965 1.11809 1.42426 1.22245 0.96540 0.90543 1.00881 1.19408 0.92100 0.86030 0.90418 0.94146 1.22370 1.00473 1.00346 0.99444 1.20975 1.13827 1.14926 1.05355 0.91532 1.24879 0.97881 0.95436 0.95338 1.69959 1.38041 1.18030 1.26374 0.86536 0.83467 0.77559 0.80216 1.20601 1.21212 1.19705 1.46217 1.06863 1.42518 1.21081 1.21818 1.01910 0.89759 0.87769 1.22165 1.02096 0.91170 0.85140 1.50345 1.13786 1.27154 1.25217 1.26322 0.99543 0.87885 0.88652 1.70602 1.04591 1.30231 1.22339 1.25981 0.97181 0.90803 0.96542 1.77963 1.00762 1.25024 1.11793 0.92743 0.92181 0.92509 0.90557 0.92068 0.91509 0.92729 0.91178 0.93786 0.89310 0.93773 0.91252 0.94474 0.94645 0.92685 0.87517 0.88073 0.89070 0.85936 0.75991 0.76831 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.17 9.67 37.16 0.36 -0.81 16 2 C -0.11 -1.12 5.38 -26.73 -0.14 -1.26 16 3 C 0.00 0.03 2.75 -91.77 -0.25 -0.22 16 4 H 0.08 0.82 6.83 -51.93 -0.35 0.46 16 5 C -0.14 -1.46 8.93 37.16 0.33 -1.12 16 6 C 0.17 2.56 6.58 -154.01 -1.01 1.54 16 7 N -0.28 -5.31 12.18 32.99 0.40 -4.91 16 8 N -0.31 -6.42 9.94 30.32 0.30 -6.12 16 9 C 0.38 7.15 6.20 -318.87 -1.98 5.18 16 10 N -0.47 -9.35 4.77 -176.08 -0.84 -10.19 16 11 C 0.05 0.85 8.71 60.07 0.52 1.37 16 12 C 0.22 5.17 2.18 -68.86 -0.15 5.02 16 13 H 0.04 1.02 7.85 -51.93 -0.41 0.61 16 14 C -0.17 -3.94 8.28 37.16 0.31 -3.64 16 15 C -0.51 -12.57 7.95 -34.44 -0.27 -12.84 16 16 H 0.07 1.62 6.57 -52.49 -0.34 1.27 16 17 C 0.07 1.71 5.17 -17.82 -0.09 1.62 16 18 N -0.89 -23.46 12.17 55.43 0.67 -22.79 16 19 Si 0.89 19.80 29.55 -169.99 -5.02 14.78 16 20 H -0.28 -6.26 7.11 56.52 0.40 -5.86 16 21 H -0.29 -6.36 7.11 56.52 0.40 -5.96 16 22 H -0.27 -5.94 7.11 56.52 0.40 -5.54 16 23 N -0.47 -7.39 2.81 -114.08 -0.32 -7.71 16 24 C 0.11 1.44 6.18 -4.04 -0.02 1.41 16 25 C 0.12 1.47 6.87 -4.04 -0.03 1.44 16 26 N -0.37 -4.71 3.69 -62.63 -0.23 -4.94 16 27 C 0.27 3.42 12.63 -90.65 -1.14 2.28 16 28 N -0.55 -7.35 11.19 -15.83 -0.18 -7.52 16 29 C 0.20 2.31 13.03 -91.81 -1.20 1.11 16 30 N -0.33 -4.15 12.57 29.29 0.37 -3.78 16 31 H 0.05 0.39 8.14 -51.93 -0.42 -0.03 16 32 H 0.06 0.42 6.56 -51.93 -0.34 0.08 16 33 H 0.06 0.40 8.14 -51.93 -0.42 -0.02 16 34 H 0.08 0.84 8.14 -51.93 -0.42 0.42 16 35 H 0.06 0.65 8.14 -51.93 -0.42 0.23 16 36 H 0.07 0.54 6.56 -51.93 -0.34 0.19 16 37 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 38 H 0.07 0.80 8.14 -51.93 -0.42 0.38 16 39 H 0.04 0.86 6.23 -51.93 -0.32 0.54 16 40 H 0.09 1.66 6.38 -51.93 -0.33 1.33 16 41 H 0.04 0.74 8.13 -51.93 -0.42 0.32 16 42 H 0.07 1.78 6.86 -51.93 -0.36 1.43 16 43 H 0.04 0.85 6.27 -51.93 -0.33 0.52 16 44 H 0.03 0.83 6.14 -51.93 -0.32 0.51 16 45 H 0.26 6.71 8.31 -40.82 -0.34 6.37 16 46 H 0.11 1.46 8.14 -51.93 -0.42 1.04 16 47 H 0.10 1.14 7.03 -51.93 -0.37 0.78 16 48 H 0.09 1.08 8.14 -51.93 -0.42 0.65 16 49 H 0.12 1.73 7.89 -51.93 -0.41 1.32 16 50 H 0.22 2.30 8.06 -52.48 -0.42 1.88 16 51 H 0.22 1.65 8.06 -52.49 -0.42 1.23 16 LS Contribution 409.58 15.07 6.17 6.17 Total: -1.00 -30.16 409.58 -11.45 -41.61 By element: Atomic # 1 Polarization: 12.33 SS G_CDS: -8.00 Total: 4.33 kcal Atomic # 6 Polarization: 5.84 SS G_CDS: -4.77 Total: 1.06 kcal Atomic # 7 Polarization: -68.13 SS G_CDS: 0.18 Total: -67.96 kcal Atomic # 14 Polarization: 19.80 SS G_CDS: -5.02 Total: 14.78 kcal Total LS contribution 6.17 Total: 6.17 kcal Total: -30.16 -11.45 -41.61 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545311254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 219.301 kcal (2) G-P(sol) polarization free energy of solvation -30.161 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 189.141 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.450 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -41.611 kcal (6) G-S(sol) free energy of system = (1) + (5) 177.690 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 7.17 seconds