Wall clock time and date at job start Wed Apr 1 2020 05:23:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52998 * 109.47418 * 2 1 4 4 H 1.08999 * 109.46917 * 55.00030 * 3 2 1 5 5 C 1.53011 * 109.47008 * 295.00244 * 3 2 1 6 6 C 1.50696 * 109.47405 * 175.00541 * 3 2 1 7 7 N 1.30299 * 126.35325 * 60.15119 * 6 3 2 8 8 N 1.28519 * 110.05645 * 180.31309 * 7 6 3 9 9 C 1.31218 * 109.85960 * 359.72202 * 8 7 6 10 10 N 1.38586 * 126.47378 * 180.02562 * 9 8 7 11 11 C 1.46909 * 110.99703 * 307.16430 * 10 9 8 12 12 C 1.46895 * 111.00357 * 71.11936 * 10 9 8 13 13 H 1.08995 * 109.46894 * 54.99838 * 12 10 9 14 14 C 1.53006 * 109.47194 * 295.00297 * 12 10 9 15 15 C 1.50699 * 109.47433 * 175.00240 * 12 10 9 16 16 H 1.07999 * 119.99875 * 5.46472 * 15 12 10 17 17 C 1.37874 * 119.99961 * 185.46378 * 15 12 10 18 18 N 1.31514 * 120.00473 * 9.76886 * 17 15 12 19 19 Si 1.86801 * 119.99788 * 189.77260 * 17 15 12 20 20 H 1.48503 * 109.47108 * 94.99277 * 19 17 15 21 21 H 1.48504 * 109.47123 * 214.99112 * 19 17 15 22 22 H 1.48505 * 109.47374 * 334.99000 * 19 17 15 23 23 N 1.36453 * 107.05653 * 359.97438 * 9 8 7 24 24 C 1.46497 * 127.13758 * 180.02562 * 23 9 8 25 25 C 1.53002 * 109.47561 * 85.67488 * 24 23 9 26 26 N 1.46497 * 109.46891 * 179.97438 * 25 24 23 27 27 C 1.34436 * 126.81971 * 125.00624 * 26 25 24 28 28 N 1.30830 * 108.07450 * 179.97438 * 27 26 25 29 29 C 1.33239 * 109.83302 * 359.97438 * 28 27 26 30 30 N 1.30714 * 108.94424 * 0.26509 * 29 28 27 31 31 H 1.09003 * 109.46743 * 299.99790 * 1 2 3 32 32 H 1.08996 * 109.46954 * 59.99635 * 1 2 3 33 33 H 1.08997 * 109.46658 * 180.02562 * 1 2 3 34 34 H 1.09004 * 109.47070 * 239.99780 * 2 1 3 35 35 H 1.09002 * 109.47805 * 120.00231 * 2 1 3 36 36 H 1.09000 * 109.46786 * 60.00041 * 5 3 2 37 37 H 1.09002 * 109.46862 * 179.97438 * 5 3 2 38 38 H 1.08999 * 109.47106 * 299.99670 * 5 3 2 39 39 H 1.09001 * 109.46940 * 62.36206 * 11 10 9 40 40 H 1.08997 * 109.46875 * 182.35989 * 11 10 9 41 41 H 1.08995 * 109.47353 * 302.36332 * 11 10 9 42 42 H 1.08998 * 109.47072 * 182.78681 * 14 12 10 43 43 H 1.09001 * 109.46756 * 302.78925 * 14 12 10 44 44 H 1.08998 * 109.46907 * 62.78262 * 14 12 10 45 45 H 0.96994 * 120.00479 * 179.97438 * 18 17 15 46 46 H 1.09001 * 109.47321 * 325.67012 * 24 23 9 47 47 H 1.09005 * 109.46924 * 205.67493 * 24 23 9 48 48 H 1.08999 * 109.47121 * 59.99978 * 25 24 23 49 49 H 1.08999 * 109.46739 * 300.00312 * 25 24 23 50 50 H 1.08003 * 125.96178 * 359.96332 * 27 26 25 51 51 H 1.07996 * 125.53045 * 180.02562 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4424 0.0000 4 1 1.6055 1.9815 0.8418 5 6 1.6353 2.1266 -1.3074 6 6 3.5420 1.4442 0.1237 7 7 4.3858 0.8967 -0.7045 8 7 5.5894 1.0810 -0.2934 9 6 5.5783 1.7668 0.8252 10 7 6.6845 2.1574 1.5631 11 6 7.5506 1.0088 1.8614 12 6 7.4326 3.2150 0.8707 13 1 6.7634 4.0454 0.6454 14 6 8.0132 2.6601 -0.4316 15 6 8.5534 3.6986 1.7545 16 1 8.7511 3.2051 2.6946 17 6 9.3264 4.7710 1.3628 18 7 8.9724 5.4912 0.3209 19 14 10.8766 5.2010 2.3122 20 1 12.0499 4.5696 1.6563 21 1 11.0534 6.6754 2.3298 22 1 10.7591 4.6999 3.7052 23 7 4.2720 2.0238 1.1242 24 6 3.7580 2.7618 2.2806 25 6 3.7498 4.2594 1.9675 26 7 3.2352 4.9972 3.1237 27 6 3.8441 6.0051 3.7724 28 7 3.0602 6.3942 4.7449 29 6 1.9469 5.6621 4.7486 30 7 2.0097 4.7894 3.7775 31 1 -0.3633 0.5138 0.8900 32 1 -0.3633 0.5139 -0.8899 33 1 -0.3632 -1.0277 0.0005 34 1 1.8934 -0.5139 -0.8900 35 1 1.8935 -0.5139 0.8899 36 1 0.5489 2.1253 -1.3969 37 1 1.9983 3.1543 -1.3072 38 1 2.0699 1.5875 -2.1492 39 1 7.9268 0.5859 0.9299 40 1 8.3888 1.3360 2.4766 41 1 6.9787 0.2525 2.3990 42 1 8.6093 3.4304 -0.9209 43 1 8.6433 1.7987 -0.2104 44 1 7.2005 2.3560 -1.0912 45 1 9.5160 6.2458 0.0456 46 1 4.3963 2.5746 3.1441 47 1 2.7429 2.4311 2.5007 48 1 3.1115 4.4466 1.1040 49 1 4.7649 4.5900 1.7473 50 1 4.8115 6.4210 3.5325 51 1 1.1274 5.7696 5.4437 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001545311254.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:19 Heat of formation + Delta-G solvation = 164.829208 kcal Electronic energy + Delta-G solvation = -32200.222525 eV Core-core repulsion = 28173.108778 eV Total energy + Delta-G solvation = -4027.113747 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 4.08 seconds Orbital eigenvalues (eV) -44.08470 -43.02868 -39.12264 -37.54464 -37.04930 -34.82631 -34.49582 -32.20407 -31.65306 -30.82916 -30.13293 -29.52597 -27.25178 -27.10513 -25.95783 -25.62296 -23.42734 -23.07597 -22.93053 -22.49106 -21.09784 -20.56289 -18.79726 -18.27540 -17.87552 -17.43684 -16.98210 -16.83251 -16.45905 -16.21318 -15.87301 -15.78722 -15.40549 -15.36544 -14.98191 -14.88575 -14.49857 -14.26405 -14.06343 -13.59925 -13.48868 -13.35690 -13.09210 -13.04743 -12.96675 -12.77575 -12.73684 -12.64793 -12.55509 -12.43558 -12.18430 -12.10946 -11.97330 -11.82856 -11.61872 -11.45573 -11.44619 -11.07010 -10.96938 -10.81776 -10.67036 -10.49912 -10.00142 -9.47125 -8.17353 -6.24469 0.52468 0.72310 0.94161 1.44907 1.47701 1.51442 1.57195 1.80570 1.99386 2.42565 2.96334 3.15970 3.19026 3.28082 3.41334 3.50633 3.66695 3.84032 3.93968 4.00682 4.06866 4.11862 4.23864 4.32741 4.35148 4.50661 4.51655 4.59605 4.63495 4.68201 4.71339 4.79652 4.92193 4.93814 4.98364 5.04704 5.06571 5.09821 5.16896 5.18449 5.20878 5.35368 5.43901 5.45540 5.50421 5.55436 5.64381 5.72555 5.79332 5.97946 6.14405 6.60351 6.84105 7.07199 7.43199 7.73622 8.92187 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008134 B = 0.004384 C = 0.003106 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3441.403438 B = 6385.584670 C = 9012.857348 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.107 4.107 3 C 0.003 3.997 4 H 0.103 0.897 5 C -0.138 4.138 6 C 0.190 3.810 7 N -0.319 5.319 8 N -0.342 5.342 9 C 0.357 3.643 10 N -0.464 5.464 11 C 0.049 3.951 12 C 0.238 3.762 13 H 0.014 0.986 14 C -0.150 4.150 15 C -0.516 4.516 16 H 0.069 0.931 17 C 0.026 3.974 18 N -0.916 5.916 19 Si 0.953 3.047 20 H -0.282 1.282 21 H -0.286 1.286 22 H -0.263 1.263 23 N -0.467 5.467 24 C 0.117 3.883 25 C 0.129 3.871 26 N -0.378 5.378 27 C 0.266 3.734 28 N -0.571 5.571 29 C 0.199 3.801 30 N -0.339 5.339 31 H 0.064 0.936 32 H 0.068 0.932 33 H 0.063 0.937 34 H 0.062 0.938 35 H 0.054 0.946 36 H 0.097 0.903 37 H 0.046 0.954 38 H 0.054 0.946 39 H 0.031 0.969 40 H 0.088 0.912 41 H 0.064 0.936 42 H 0.043 0.957 43 H 0.038 0.962 44 H 0.029 0.971 45 H 0.263 0.737 46 H 0.099 0.901 47 H 0.124 0.876 48 H 0.099 0.901 49 H 0.102 0.898 50 H 0.235 0.765 51 H 0.250 0.750 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -17.592 -4.353 4.781 18.743 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.146 4.146 3 C -0.018 4.018 4 H 0.121 0.879 5 C -0.196 4.196 6 C -0.078 4.078 7 N -0.158 5.158 8 N -0.185 5.185 9 C 0.000 4.000 10 N -0.190 5.190 11 C -0.098 4.098 12 C 0.132 3.868 13 H 0.032 0.968 14 C -0.210 4.210 15 C -0.555 4.555 16 H 0.088 0.912 17 C -0.175 4.175 18 N -0.555 5.555 19 Si 0.779 3.221 20 H -0.208 1.208 21 H -0.212 1.212 22 H -0.187 1.187 23 N -0.161 5.161 24 C -0.006 4.006 25 C 0.005 3.995 26 N -0.168 5.168 27 C -0.031 4.031 28 N -0.299 5.299 29 C -0.103 4.103 30 N -0.167 5.167 31 H 0.083 0.917 32 H 0.087 0.913 33 H 0.082 0.918 34 H 0.080 0.920 35 H 0.072 0.928 36 H 0.115 0.885 37 H 0.066 0.934 38 H 0.073 0.927 39 H 0.049 0.951 40 H 0.106 0.894 41 H 0.083 0.917 42 H 0.062 0.938 43 H 0.057 0.943 44 H 0.048 0.952 45 H 0.072 0.928 46 H 0.118 0.882 47 H 0.142 0.858 48 H 0.118 0.882 49 H 0.120 0.880 50 H 0.251 0.749 51 H 0.266 0.734 Dipole moment (debyes) X Y Z Total from point charges -17.615 -5.069 3.948 18.750 hybrid contribution 1.561 0.912 0.319 1.836 sum -16.054 -4.157 4.267 17.123 Atomic orbital electron populations 1.21795 0.92920 1.02710 1.02937 1.21474 0.97615 0.93326 1.02174 1.19868 0.80942 0.99598 1.01359 0.87865 1.21830 1.03154 0.99478 0.95145 1.25488 0.98121 0.97475 0.86762 1.73864 0.95668 1.21674 1.24553 1.74669 1.14689 1.19531 1.09573 1.22867 0.86048 0.98532 0.92527 1.59346 1.06075 1.11672 1.41885 1.22235 0.96687 0.90499 1.00384 1.19061 0.91470 0.86241 0.90047 0.96801 1.22187 0.99793 0.99372 0.99622 1.21200 1.14078 1.14720 1.05471 0.91244 1.25560 1.00298 0.95483 0.96116 1.70072 1.39045 1.18514 1.27834 0.85612 0.79999 0.77078 0.79375 1.20810 1.21234 1.18741 1.46314 1.05752 1.42279 1.21741 1.21935 1.02683 0.89695 0.86335 1.21943 1.01182 0.90792 0.85557 1.50315 1.14034 1.27213 1.25239 1.26653 1.00012 0.87853 0.88540 1.70639 1.05424 1.31006 1.22786 1.26712 0.97403 0.89730 0.96456 1.77938 1.00705 1.25714 1.12309 0.91741 0.91263 0.91792 0.91957 0.92760 0.88476 0.93447 0.92683 0.95081 0.89393 0.91744 0.93806 0.94284 0.95199 0.92827 0.88233 0.85773 0.88245 0.88014 0.74851 0.73449 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.78 9.67 71.98 0.70 -1.09 16 2 C -0.11 -1.94 5.38 30.59 0.16 -1.78 16 3 C 0.00 0.06 2.75 -11.54 -0.03 0.03 16 4 H 0.10 1.69 6.83 -2.39 -0.02 1.68 16 5 C -0.14 -2.57 8.93 71.99 0.64 -1.93 16 6 C 0.19 5.65 6.58 137.64 0.91 6.55 16 7 N -0.32 -12.00 12.18 -49.54 -0.60 -12.60 16 8 N -0.34 -14.38 9.94 -58.00 -0.58 -14.96 16 9 C 0.36 13.75 6.20 260.11 1.61 15.36 16 10 N -0.46 -18.64 4.77 -710.99 -3.39 -22.03 16 11 C 0.05 1.84 8.71 127.69 1.11 2.95 16 12 C 0.24 11.19 2.18 44.17 0.10 11.29 16 13 H 0.01 0.74 7.85 -2.39 -0.02 0.72 16 14 C -0.15 -7.34 8.28 71.98 0.60 -6.74 16 15 C -0.52 -25.52 7.95 25.60 0.20 -25.31 16 16 H 0.07 3.35 6.57 -2.91 -0.02 3.33 16 17 C 0.03 1.30 5.17 84.65 0.44 1.74 16 18 N -0.92 -49.44 12.17 21.45 0.26 -49.18 16 19 Si 0.95 40.57 29.55 68.60 2.03 42.60 16 20 H -0.28 -12.04 7.11 99.48 0.71 -11.34 16 21 H -0.29 -12.13 7.11 99.48 0.71 -11.43 16 22 H -0.26 -10.74 7.11 99.48 0.71 -10.03 16 23 N -0.47 -14.37 2.81 -514.84 -1.45 -15.82 16 24 C 0.12 2.85 6.18 86.38 0.53 3.39 16 25 C 0.13 3.12 6.87 86.38 0.59 3.71 16 26 N -0.38 -9.03 3.69 -352.06 -1.30 -10.34 16 27 C 0.27 6.45 12.63 180.36 2.28 8.73 16 28 N -0.57 -14.41 11.19 -204.00 -2.28 -16.69 16 29 C 0.20 4.20 13.03 180.77 2.36 6.55 16 30 N -0.34 -7.85 12.57 -61.25 -0.77 -8.62 16 31 H 0.06 0.68 8.14 -2.39 -0.02 0.66 16 32 H 0.07 0.73 6.56 -2.39 -0.02 0.71 16 33 H 0.06 0.72 8.14 -2.39 -0.02 0.70 16 34 H 0.06 1.31 8.14 -2.38 -0.02 1.29 16 35 H 0.05 1.06 8.14 -2.39 -0.02 1.04 16 36 H 0.10 1.24 6.56 -2.39 -0.02 1.22 16 37 H 0.05 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.05 1.20 8.14 -2.39 -0.02 1.18 16 39 H 0.03 1.22 6.23 -2.39 -0.01 1.21 16 40 H 0.09 3.25 6.38 -2.39 -0.02 3.24 16 41 H 0.06 2.11 8.13 -2.39 -0.02 2.09 16 42 H 0.04 2.33 6.86 -2.39 -0.02 2.31 16 43 H 0.04 1.83 6.27 -2.39 -0.01 1.82 16 44 H 0.03 1.45 6.14 -2.39 -0.01 1.44 16 45 H 0.26 13.62 8.31 -92.71 -0.77 12.85 16 46 H 0.10 2.62 8.14 -2.39 -0.02 2.60 16 47 H 0.12 2.47 7.03 -2.38 -0.02 2.45 16 48 H 0.10 2.23 8.14 -2.39 -0.02 2.21 16 49 H 0.10 2.94 7.89 -2.39 -0.02 2.92 16 50 H 0.24 4.80 8.06 -2.91 -0.02 4.77 16 51 H 0.25 3.04 8.06 -2.91 -0.02 3.02 16 Total: -1.00 -65.62 409.58 5.04 -60.58 By element: Atomic # 1 Polarization: 22.68 SS G_CDS: 0.93 Total: 23.61 kcal Atomic # 6 Polarization: 11.25 SS G_CDS: 12.20 Total: 23.45 kcal Atomic # 7 Polarization: -140.12 SS G_CDS: -10.11 Total: -150.24 kcal Atomic # 14 Polarization: 40.57 SS G_CDS: 2.03 Total: 42.60 kcal Total: -65.62 5.04 -60.58 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545311254.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 225.407 kcal (2) G-P(sol) polarization free energy of solvation -65.620 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 159.787 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 5.042 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -60.578 kcal (6) G-S(sol) free energy of system = (1) + (5) 164.829 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 4.09 seconds