Wall clock time and date at job start Wed Apr 1 2020 05:23:38 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53001 * 1 3 3 C 1.52994 * 109.47291 * 2 1 4 4 H 1.09000 * 109.47761 * 54.99540 * 3 2 1 5 5 C 1.53008 * 109.46879 * 294.99533 * 3 2 1 6 6 C 1.50701 * 109.47243 * 174.99827 * 3 2 1 7 7 N 1.30292 * 126.34722 * 59.95698 * 6 3 2 8 8 N 1.28529 * 110.05436 * 180.02562 * 7 6 3 9 9 C 1.31224 * 109.85942 * 359.75055 * 8 7 6 10 10 N 1.38579 * 126.47501 * 180.25306 * 9 8 7 11 11 C 1.46899 * 111.00270 * 260.69450 * 10 9 8 12 12 C 1.46909 * 110.99763 * 24.64944 * 10 9 8 13 13 H 1.08998 * 109.46645 * 299.99727 * 12 10 9 14 14 C 1.52998 * 109.47220 * 59.99956 * 12 10 9 15 15 C 1.50701 * 109.46621 * 179.97438 * 12 10 9 16 16 H 1.07997 * 120.00432 * 359.97438 * 15 12 10 17 17 C 1.37879 * 119.99452 * 179.97438 * 15 12 10 18 18 N 1.31513 * 120.00072 * 359.97438 * 17 15 12 19 19 Si 1.86801 * 119.99841 * 180.02562 * 17 15 12 20 20 H 1.48505 * 109.46913 * 359.97438 * 19 17 15 21 21 H 1.48501 * 109.47310 * 119.99770 * 19 17 15 22 22 H 1.48501 * 109.47218 * 240.00027 * 19 17 15 23 23 N 1.36458 * 107.04899 * 0.39452 * 9 8 7 24 24 C 1.46501 * 127.13035 * 179.87982 * 23 9 8 25 25 C 1.52999 * 109.46883 * 263.94314 * 24 23 9 26 26 N 1.46500 * 109.47272 * 175.12324 * 25 24 23 27 27 C 1.34427 * 126.82939 * 124.99673 * 26 25 24 28 28 N 1.30826 * 108.08285 * 179.97438 * 27 26 25 29 29 C 1.33248 * 109.82799 * 359.97438 * 28 27 26 30 30 N 1.30717 * 108.94552 * 0.26446 * 29 28 27 31 31 H 1.09000 * 109.46671 * 60.00436 * 1 2 3 32 32 H 1.09004 * 109.46815 * 180.02562 * 1 2 3 33 33 H 1.08992 * 109.46961 * 300.00449 * 1 2 3 34 34 H 1.08999 * 109.47606 * 239.99556 * 2 1 3 35 35 H 1.09008 * 109.46924 * 119.99765 * 2 1 3 36 36 H 1.08997 * 109.47053 * 299.99767 * 5 3 2 37 37 H 1.09000 * 109.46614 * 60.00443 * 5 3 2 38 38 H 1.09001 * 109.46972 * 180.02562 * 5 3 2 39 39 H 1.08997 * 109.46867 * 54.76844 * 11 10 9 40 40 H 1.09000 * 109.47156 * 174.77137 * 11 10 9 41 41 H 1.09001 * 109.46533 * 294.77499 * 11 10 9 42 42 H 1.09003 * 109.47491 * 59.99548 * 14 12 10 43 43 H 1.08997 * 109.46945 * 179.97438 * 14 12 10 44 44 H 1.09004 * 109.47182 * 299.99739 * 14 12 10 45 45 H 0.97006 * 119.99672 * 179.97438 * 18 17 15 46 46 H 1.08998 * 109.46834 * 143.94600 * 24 23 9 47 47 H 1.09002 * 109.47241 * 23.94074 * 24 23 9 48 48 H 1.08999 * 109.47625 * 55.12228 * 25 24 23 49 49 H 1.09000 * 109.47268 * 295.12085 * 25 24 23 50 50 H 1.08001 * 125.95665 * 359.97438 * 27 26 25 51 51 H 1.07994 * 125.52517 * 179.97438 * 29 28 27 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 1.6054 1.9816 0.8417 5 6 1.6353 2.1264 -1.3075 6 6 3.5420 1.4442 0.1239 7 7 4.3856 0.8936 -0.7024 8 7 5.5896 1.0841 -0.2950 9 6 5.5788 1.7768 0.8195 10 7 6.6854 2.1790 1.5502 11 6 6.9190 1.2811 2.6891 12 6 7.8772 2.2665 0.6957 13 1 8.0832 1.2895 0.2586 14 6 7.6306 3.2831 -0.4209 15 6 9.0574 2.7063 1.5232 16 1 8.9344 2.9017 2.5782 17 6 10.2942 2.8591 0.9333 18 7 10.4440 2.6207 -0.3513 19 14 11.7573 3.4036 1.9591 20 1 11.3278 3.6047 3.3663 21 1 12.8134 2.3608 1.9076 22 1 12.2938 4.6785 1.4187 23 7 4.2718 2.0235 1.1245 24 6 3.7577 2.7615 2.2810 25 6 3.3822 1.7756 3.3891 26 7 2.9783 2.5172 4.5863 27 6 1.8206 2.3937 5.2583 28 7 1.8448 3.2281 6.2656 29 6 2.9966 3.8981 6.2700 30 7 3.7221 3.5015 5.2575 31 1 -0.3633 0.5138 -0.8900 32 1 -0.3633 -1.0277 0.0005 33 1 -0.3633 0.5139 0.8899 34 1 1.8934 -0.5139 -0.8899 35 1 1.8933 -0.5138 0.8901 36 1 2.0700 1.5874 -2.1492 37 1 0.5490 2.1252 -1.3970 38 1 1.9991 3.1540 -1.3077 39 1 6.9980 0.2544 2.3320 40 1 7.8446 1.5637 3.1907 41 1 6.0876 1.3591 3.3897 42 1 7.4244 4.2601 0.0162 43 1 8.5150 3.3482 -1.0546 44 1 6.7768 2.9654 -1.0195 45 1 11.3141 2.7286 -0.7664 46 1 2.8757 3.3300 1.9863 47 1 4.5248 3.4442 2.6466 48 1 4.2417 1.1477 3.6235 49 1 2.5555 1.1494 3.0536 50 1 1.0116 1.7227 5.0098 51 1 3.2822 4.6504 6.9902 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001545311255.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:38 Heat of formation + Delta-G solvation = 182.236430 kcal Electronic energy + Delta-G solvation = -31995.224109 eV Core-core repulsion = 27968.865196 eV Total energy + Delta-G solvation = -4026.358913 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.01 seconds Orbital eigenvalues (eV) -42.72099 -42.28687 -37.39295 -36.57242 -36.05295 -33.60186 -32.83903 -31.47697 -30.53393 -29.38825 -29.21860 -28.55602 -25.81111 -24.99723 -24.68749 -24.33760 -22.47883 -22.24772 -21.96564 -21.23458 -19.95776 -19.16457 -17.89359 -17.01753 -16.32841 -16.12492 -15.79770 -15.49945 -15.28524 -15.21240 -14.92742 -14.67712 -14.45596 -14.21059 -13.89592 -13.66144 -13.40041 -13.11870 -12.86029 -12.51935 -12.43849 -12.33636 -11.99248 -11.89533 -11.82417 -11.50423 -11.14526 -11.13390 -11.04501 -10.93372 -10.90447 -10.72824 -10.41802 -10.32989 -10.28423 -10.16541 -10.10413 -10.06903 -9.96404 -9.75834 -9.22140 -8.66191 -8.48873 -7.56541 -6.07152 -4.14437 1.32613 1.77581 2.07301 2.59520 2.71190 3.26537 3.28625 3.34634 3.37850 3.92205 4.02249 4.22507 4.25911 4.32682 4.48566 4.49982 4.59453 4.63817 4.75015 4.80435 4.98871 5.04922 5.14314 5.24955 5.25233 5.37865 5.38653 5.57501 5.64171 5.66092 5.75254 5.83694 5.85746 5.91734 5.99271 6.06235 6.12983 6.14705 6.23441 6.28232 6.44121 6.48796 6.81196 6.90691 7.05850 7.13396 7.39552 7.63083 7.71294 7.79089 7.92413 8.20425 8.40938 8.87851 9.23068 9.50381 10.99343 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008678 B = 0.003847 C = 0.002804 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3225.624159 B = 7276.299790 C = 9982.573366 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.152 4.152 2 C -0.113 4.113 3 C 0.007 3.993 4 H 0.077 0.923 5 C -0.143 4.143 6 C 0.154 3.846 7 N -0.277 5.277 8 N -0.312 5.312 9 C 0.389 3.611 10 N -0.463 5.463 11 C 0.042 3.958 12 C 0.229 3.771 13 H 0.026 0.974 14 C -0.132 4.132 15 C -0.516 4.516 16 H 0.066 0.934 17 C 0.064 3.936 18 N -0.884 5.884 19 Si 0.899 3.101 20 H -0.272 1.272 21 H -0.284 1.284 22 H -0.283 1.283 23 N -0.483 5.483 24 C 0.106 3.894 25 C 0.116 3.884 26 N -0.377 5.377 27 C 0.255 3.745 28 N -0.546 5.546 29 C 0.198 3.802 30 N -0.305 5.305 31 H 0.060 0.940 32 H 0.057 0.943 33 H 0.052 0.948 34 H 0.078 0.922 35 H 0.060 0.940 36 H 0.070 0.930 37 H 0.065 0.935 38 H 0.054 0.946 39 H 0.027 0.973 40 H 0.100 0.900 41 H 0.043 0.957 42 H 0.026 0.974 43 H 0.090 0.910 44 H 0.016 0.984 45 H 0.262 0.738 46 H 0.093 0.907 47 H 0.120 0.880 48 H 0.100 0.900 49 H 0.106 0.894 50 H 0.218 0.782 51 H 0.218 0.782 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -21.947 -2.330 7.125 23.192 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.210 4.210 2 C -0.151 4.151 3 C -0.014 4.014 4 H 0.095 0.905 5 C -0.201 4.201 6 C -0.114 4.114 7 N -0.116 5.116 8 N -0.155 5.155 9 C 0.033 3.967 10 N -0.189 5.189 11 C -0.106 4.106 12 C 0.125 3.875 13 H 0.044 0.956 14 C -0.191 4.191 15 C -0.554 4.554 16 H 0.084 0.916 17 C -0.138 4.138 18 N -0.522 5.522 19 Si 0.727 3.273 20 H -0.197 1.197 21 H -0.210 1.210 22 H -0.209 1.209 23 N -0.179 5.179 24 C -0.019 4.019 25 C -0.008 4.008 26 N -0.169 5.169 27 C -0.042 4.042 28 N -0.273 5.273 29 C -0.105 4.105 30 N -0.132 5.132 31 H 0.079 0.921 32 H 0.076 0.924 33 H 0.071 0.929 34 H 0.096 0.904 35 H 0.079 0.921 36 H 0.089 0.911 37 H 0.084 0.916 38 H 0.073 0.927 39 H 0.046 0.954 40 H 0.119 0.881 41 H 0.062 0.938 42 H 0.045 0.955 43 H 0.109 0.891 44 H 0.035 0.965 45 H 0.072 0.928 46 H 0.112 0.888 47 H 0.139 0.861 48 H 0.118 0.882 49 H 0.124 0.876 50 H 0.235 0.765 51 H 0.235 0.765 Dipole moment (debyes) X Y Z Total from point charges -20.811 -2.345 5.971 21.777 hybrid contribution 0.485 0.317 1.251 1.379 sum -20.326 -2.027 7.223 21.666 Atomic orbital electron populations 1.21835 0.95278 1.01918 1.01938 1.21541 0.95619 0.94656 1.03322 1.19503 0.84105 0.98020 0.99817 0.90504 1.21844 1.01170 1.00564 0.96501 1.24543 0.96515 1.01594 0.88709 1.73935 0.95759 1.19032 1.22878 1.74869 1.12778 1.16661 1.11205 1.23108 0.84260 0.95027 0.94279 1.59152 1.03432 1.45715 1.10559 1.22369 1.02655 0.93709 0.91833 1.19358 0.82303 0.96383 0.89464 0.95617 1.21811 1.00848 0.97588 0.98816 1.21095 0.92099 1.46773 0.95469 0.91587 1.24898 0.98763 0.95170 0.95016 1.69928 1.23902 1.48391 1.09953 0.86427 0.82289 0.78284 0.80326 1.19682 1.20987 1.20938 1.46149 1.06800 1.44355 1.20621 1.21855 1.02513 0.93951 0.83590 1.22209 1.03406 0.93549 0.81644 1.50404 1.13590 1.30114 1.22792 1.26104 0.90450 0.98104 0.89572 1.70567 1.23208 1.11374 1.22191 1.26094 0.88355 0.99590 0.96433 1.78237 1.19310 1.05665 1.10027 0.92122 0.92437 0.92912 0.90358 0.92142 0.91086 0.91567 0.92661 0.95382 0.88145 0.93799 0.95467 0.89129 0.96465 0.92771 0.88828 0.86149 0.88240 0.87555 0.76543 0.76543 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -0.92 9.67 37.16 0.36 -0.56 16 2 C -0.11 -0.96 5.38 -26.73 -0.14 -1.10 16 3 C 0.01 0.06 2.76 -91.77 -0.25 -0.19 16 4 H 0.08 0.58 7.09 -51.93 -0.37 0.21 16 5 C -0.14 -1.36 8.93 37.16 0.33 -1.03 16 6 C 0.15 2.26 6.58 -154.02 -1.01 1.24 16 7 N -0.28 -5.28 12.18 32.99 0.40 -4.88 16 8 N -0.31 -6.89 10.27 30.32 0.31 -6.58 16 9 C 0.39 7.74 5.91 -318.86 -1.89 5.85 16 10 N -0.46 -9.87 4.61 -176.08 -0.81 -10.69 16 11 C 0.04 0.78 9.36 60.06 0.56 1.34 16 12 C 0.23 5.84 1.74 -68.86 -0.12 5.72 16 13 H 0.03 0.75 7.89 -51.93 -0.41 0.34 16 14 C -0.13 -3.43 8.81 37.16 0.33 -3.10 16 15 C -0.52 -13.74 7.81 -34.44 -0.27 -14.01 16 16 H 0.07 1.72 6.45 -52.49 -0.34 1.38 16 17 C 0.06 1.74 5.30 -17.82 -0.09 1.65 16 18 N -0.88 -25.15 11.32 55.43 0.63 -24.52 16 19 Si 0.90 20.92 29.54 -169.99 -5.02 15.90 16 20 H -0.27 -6.21 7.11 56.52 0.40 -5.81 16 21 H -0.28 -6.58 7.11 56.52 0.40 -6.18 16 22 H -0.28 -6.60 7.11 56.52 0.40 -6.20 16 23 N -0.48 -7.34 2.81 -114.08 -0.32 -7.66 16 24 C 0.11 1.23 5.99 -4.04 -0.02 1.21 16 25 C 0.12 1.04 6.86 -4.04 -0.03 1.02 16 26 N -0.38 -3.66 3.69 -62.63 -0.23 -3.89 16 27 C 0.25 2.05 12.63 -90.66 -1.14 0.90 16 28 N -0.55 -5.67 11.19 -15.83 -0.18 -5.85 16 29 C 0.20 2.06 13.03 -91.80 -1.20 0.86 16 30 N -0.31 -3.72 12.52 29.29 0.37 -3.35 16 31 H 0.06 0.35 6.56 -51.93 -0.34 0.01 16 32 H 0.06 0.32 8.14 -51.93 -0.42 -0.10 16 33 H 0.05 0.26 8.14 -51.93 -0.42 -0.16 16 34 H 0.08 0.79 8.14 -51.93 -0.42 0.37 16 35 H 0.06 0.51 8.14 -51.92 -0.42 0.09 16 36 H 0.07 0.78 8.14 -51.93 -0.42 0.36 16 37 H 0.07 0.46 6.56 -51.93 -0.34 0.12 16 38 H 0.05 0.57 8.14 -51.93 -0.42 0.15 16 39 H 0.03 0.53 8.11 -51.93 -0.42 0.11 16 40 H 0.10 1.98 5.96 -51.93 -0.31 1.67 16 41 H 0.04 0.68 6.15 -51.93 -0.32 0.36 16 42 H 0.03 0.68 8.14 -51.93 -0.42 0.26 16 43 H 0.09 2.54 6.07 -51.93 -0.32 2.22 16 44 H 0.02 0.42 6.39 -51.93 -0.33 0.09 16 45 H 0.26 7.09 8.31 -40.82 -0.34 6.75 16 46 H 0.09 0.89 7.49 -51.93 -0.39 0.51 16 47 H 0.12 1.72 8.04 -51.93 -0.42 1.30 16 48 H 0.10 1.05 6.16 -51.93 -0.32 0.73 16 49 H 0.11 0.63 8.09 -51.93 -0.42 0.21 16 50 H 0.22 0.72 8.06 -52.49 -0.42 0.30 16 51 H 0.22 1.55 8.06 -52.49 -0.42 1.12 16 LS Contribution 408.66 15.07 6.16 6.16 Total: -1.00 -34.09 408.66 -11.27 -45.36 By element: Atomic # 1 Polarization: 8.19 SS G_CDS: -7.98 Total: 0.21 kcal Atomic # 6 Polarization: 4.40 SS G_CDS: -4.59 Total: -0.20 kcal Atomic # 7 Polarization: -67.59 SS G_CDS: 0.17 Total: -67.43 kcal Atomic # 14 Polarization: 20.92 SS G_CDS: -5.02 Total: 15.90 kcal Total LS contribution 6.16 Total: 6.16 kcal Total: -34.09 -11.27 -45.36 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001545311255.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 227.592 kcal (2) G-P(sol) polarization free energy of solvation -34.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 193.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -11.269 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -45.356 kcal (6) G-S(sol) free energy of system = (1) + (5) 182.236 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.01 seconds