Wall clock time and date at job start Wed Apr 1 2020 04:51:06 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46498 * 1 3 3 C 1.34780 * 119.99825 * 2 1 4 4 O 1.21273 * 120.00184 * 174.93253 * 3 2 1 5 5 C 1.50703 * 119.99804 * 354.94044 * 3 2 1 6 6 H 1.08993 * 107.88452 * 31.14083 * 5 3 2 7 7 C 1.50957 * 108.02446 * 274.58956 * 5 3 2 8 8 C 1.53678 * 110.95592 * 165.71966 * 7 5 3 9 9 C 1.51879 * 106.90093 * 79.08102 * 8 7 5 10 10 N 1.29903 * 127.80232 * 114.84970 * 9 8 7 11 11 N 1.29038 * 109.22284 * 180.25305 * 10 9 8 12 12 C 1.30975 * 109.70693 * 359.93946 * 11 10 9 13 13 N 1.34591 * 124.58338 * 294.89864 * 9 8 7 14 14 C 1.47505 * 125.02775 * 359.51107 * 13 9 8 15 15 C 1.50858 * 108.02920 * 147.69206 * 5 3 2 16 16 C 1.46500 * 120.00418 * 180.02562 * 2 1 3 17 17 H 1.08990 * 109.47273 * 179.97438 * 16 2 1 18 18 C 1.53001 * 109.46952 * 300.00272 * 16 2 1 19 19 N 1.46494 * 109.47051 * 304.99625 * 18 16 2 20 20 C 1.36940 * 119.99957 * 180.02562 * 19 18 16 21 21 H 1.07995 * 119.99708 * 359.97438 * 20 19 18 22 22 C 1.38816 * 120.00061 * 180.02562 * 20 19 18 23 23 N 1.31616 * 119.99769 * 359.97438 * 22 20 19 24 24 Si 1.86796 * 119.99871 * 179.97438 * 22 20 19 25 25 H 1.48499 * 109.47292 * 90.00104 * 24 22 20 26 26 H 1.48502 * 109.46861 * 209.99724 * 24 22 20 27 27 H 1.48498 * 109.47078 * 329.99577 * 24 22 20 28 28 C 1.53002 * 109.46498 * 59.99935 * 16 2 1 29 29 C 1.53002 * 117.49654 * 248.74641 * 28 16 2 30 30 C 1.53005 * 117.49573 * 180.08818 * 28 16 2 31 31 H 1.09001 * 109.47420 * 275.34564 * 1 2 3 32 32 H 1.09000 * 109.47476 * 35.34818 * 1 2 3 33 33 H 1.08997 * 109.46964 * 155.34634 * 1 2 3 34 34 H 1.08998 * 109.17988 * 286.09354 * 7 5 3 35 35 H 1.09000 * 109.18284 * 45.33600 * 7 5 3 36 36 H 1.09007 * 109.96643 * 198.43399 * 8 7 5 37 37 H 1.08999 * 109.96688 * 319.64552 * 8 7 5 38 38 H 1.07993 * 126.60935 * 179.86399 * 12 11 10 39 39 H 1.08998 * 109.93512 * 185.34436 * 14 13 9 40 40 H 1.09005 * 109.93020 * 306.47138 * 14 13 9 41 41 H 1.08999 * 109.14867 * 314.86618 * 15 5 3 42 42 H 1.09003 * 109.15131 * 74.01621 * 15 5 3 43 43 H 1.09004 * 109.47386 * 64.99797 * 18 16 2 44 44 H 1.09002 * 109.46403 * 184.99558 * 18 16 2 45 45 H 0.97001 * 120.00407 * 0.02562 * 19 18 16 46 46 H 0.97005 * 119.99919 * 180.02562 * 23 22 20 47 47 H 1.09000 * 115.55419 * 34.42321 * 28 16 2 48 48 H 1.08998 * 117.50005 * 359.97438 * 29 28 16 49 49 H 1.09001 * 117.49686 * 145.03341 * 29 28 16 50 50 H 1.08996 * 117.49843 * 214.98075 * 30 28 16 51 51 H 1.09000 * 117.49861 * 359.97438 * 30 28 16 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1388 1.1672 0.0000 4 8 3.3480 1.1694 0.0928 5 6 1.3896 2.4698 -0.1151 6 1 0.4150 2.3379 0.3545 7 6 1.1674 2.7529 -1.5812 8 6 0.1189 3.8596 -1.7745 9 6 0.8218 5.1824 -1.5235 10 7 1.0445 6.1395 -2.3732 11 7 1.6736 7.0969 -1.7793 12 6 1.8735 6.7821 -0.5238 13 7 1.3334 5.5628 -0.3382 14 6 1.2840 4.7640 0.9008 15 6 2.1469 3.5146 0.6664 16 6 2.1976 -1.2687 -0.0006 17 1 3.2691 -1.0695 -0.0009 18 6 1.8279 -2.0716 1.2483 19 7 2.0707 -1.2575 2.4418 20 6 1.8113 -1.7702 3.6848 21 1 1.4273 -2.7746 3.7851 22 6 2.0408 -0.9986 4.8156 23 7 2.5082 0.2256 4.6932 24 14 1.6862 -1.6979 6.5111 25 1 2.9009 -2.3757 7.0310 26 1 1.3024 -0.5965 7.4303 27 1 0.5735 -2.6770 6.4199 28 6 1.8279 -2.0703 -1.2502 29 6 1.0115 -3.3493 -1.0532 30 6 2.4914 -3.4366 -1.4349 31 1 -0.3634 0.0957 1.0232 32 1 -0.3634 0.8382 -0.5945 33 1 -0.3633 -0.9340 -0.4287 34 1 2.1085 3.0685 -2.0316 35 1 0.8231 1.8433 -2.0734 36 1 -0.2687 3.8313 -2.7929 37 1 -0.6960 3.7287 -1.0626 38 1 2.3751 7.3842 0.2192 39 1 1.6859 5.3428 1.7324 40 1 0.2555 4.4724 1.1142 41 1 2.4406 3.0975 1.6297 42 1 3.0421 3.7966 0.1122 43 1 0.7742 -2.3470 1.2045 44 1 2.4378 -2.9739 1.2937 45 1 2.4152 -0.3552 2.3516 46 1 2.6690 0.7647 5.4835 47 1 1.6317 -1.4810 -2.1459 48 1 0.7382 -3.6198 -0.0333 49 1 0.2786 -3.6016 -1.8195 50 1 2.7313 -3.7462 -2.4521 51 1 3.1915 -3.7641 -0.6664 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001571364726.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:06 Heat of formation + Delta-G solvation = 69.090687 kcal Electronic energy + Delta-G solvation = -32229.814904 eV Core-core repulsion = 28166.256872 eV Total energy + Delta-G solvation = -4063.558032 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 6.78 seconds Orbital eigenvalues (eV) -44.25031 -41.55281 -39.38846 -37.79415 -36.38498 -35.84192 -35.13016 -33.25932 -32.89138 -30.92841 -29.84761 -28.05000 -27.47741 -26.00444 -25.35537 -24.11265 -23.40061 -23.14909 -22.70798 -21.20299 -20.71140 -19.84220 -19.04691 -18.71439 -18.03424 -17.58729 -16.91156 -16.67350 -16.55846 -16.18390 -15.94450 -15.70995 -15.53911 -15.17163 -14.98403 -14.83657 -14.55103 -14.39494 -14.02487 -13.70321 -13.60076 -13.34537 -13.15307 -13.09393 -13.04282 -12.90482 -12.75598 -12.60084 -12.42340 -12.31799 -12.23905 -12.00459 -11.98316 -11.82994 -11.75679 -11.37750 -11.30965 -11.15375 -10.98545 -10.87859 -10.54685 -10.16654 -9.53290 -8.98671 -7.93272 -5.22423 0.95638 1.46188 1.48196 1.55900 1.61565 1.67567 1.88596 2.01383 2.55050 2.94150 3.22333 3.33476 3.39629 3.49052 3.61112 3.69305 3.83500 3.86128 3.96158 4.04474 4.09566 4.14342 4.19451 4.26471 4.29109 4.33659 4.42974 4.43656 4.46058 4.51746 4.66811 4.72593 4.76120 4.83338 4.85584 4.91412 4.93974 5.01971 5.07328 5.09698 5.10622 5.14817 5.17076 5.25474 5.28993 5.34262 5.48416 5.67971 5.97458 6.27011 6.50381 7.25154 7.34208 7.74885 8.09364 8.33633 9.29496 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.009761 B = 0.003582 C = 0.002784 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2867.877298 B = 7815.537958 C =10054.341713 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.073 3.927 2 N -0.592 5.592 3 C 0.510 3.490 4 O -0.592 6.592 5 C -0.095 4.095 6 H 0.119 0.881 7 C -0.097 4.097 8 C -0.022 4.022 9 C 0.176 3.824 10 N -0.342 5.342 11 N -0.354 5.354 12 C 0.157 3.843 13 N -0.466 5.466 14 C 0.114 3.886 15 C -0.115 4.115 16 C 0.168 3.832 17 H 0.061 0.939 18 C 0.147 3.853 19 N -0.739 5.739 20 C -0.244 4.244 21 H 0.074 0.926 22 C -0.070 4.070 23 N -0.964 5.964 24 Si 0.970 3.030 25 H -0.294 1.294 26 H -0.294 1.294 27 H -0.267 1.267 28 C -0.161 4.161 29 C -0.167 4.167 30 C -0.176 4.176 31 H 0.044 0.956 32 H 0.104 0.896 33 H 0.090 0.910 34 H 0.047 0.953 35 H 0.105 0.895 36 H 0.121 0.879 37 H 0.123 0.877 38 H 0.253 0.747 39 H 0.130 0.870 40 H 0.126 0.874 41 H 0.074 0.926 42 H 0.055 0.945 43 H 0.043 0.957 44 H 0.018 0.982 45 H 0.373 0.627 46 H 0.250 0.750 47 H 0.120 0.880 48 H 0.092 0.908 49 H 0.119 0.881 50 H 0.114 0.886 51 H 0.080 0.920 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.090 3.028 -12.770 16.554 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.068 4.068 2 N -0.323 5.323 3 C 0.299 3.701 4 O -0.472 6.472 5 C -0.116 4.116 6 H 0.137 0.863 7 C -0.136 4.136 8 C -0.061 4.061 9 C -0.094 4.094 10 N -0.181 5.181 11 N -0.193 5.193 12 C -0.132 4.132 13 N -0.156 5.156 14 C -0.007 4.007 15 C -0.153 4.153 16 C 0.063 3.937 17 H 0.079 0.921 18 C 0.020 3.980 19 N -0.382 5.382 20 C -0.376 4.376 21 H 0.092 0.908 22 C -0.262 4.262 23 N -0.614 5.614 24 Si 0.799 3.201 25 H -0.222 1.222 26 H -0.220 1.220 27 H -0.192 1.192 28 C -0.180 4.180 29 C -0.203 4.203 30 C -0.213 4.213 31 H 0.063 0.937 32 H 0.122 0.878 33 H 0.108 0.892 34 H 0.066 0.934 35 H 0.124 0.876 36 H 0.139 0.861 37 H 0.141 0.859 38 H 0.269 0.731 39 H 0.148 0.852 40 H 0.144 0.856 41 H 0.092 0.908 42 H 0.074 0.926 43 H 0.060 0.940 44 H 0.036 0.964 45 H 0.205 0.795 46 H 0.058 0.942 47 H 0.138 0.862 48 H 0.111 0.889 49 H 0.137 0.863 50 H 0.132 0.868 51 H 0.099 0.901 Dipole moment (debyes) X Y Z Total from point charges -9.524 3.674 -13.874 17.225 hybrid contribution 0.947 -0.627 2.581 2.820 sum -8.577 3.046 -11.294 14.505 Atomic orbital electron populations 1.22017 0.77465 1.05185 1.02164 1.47732 1.08196 1.04549 1.71791 1.21283 0.87561 0.86554 0.74699 1.90683 1.16964 1.87842 1.51700 1.20702 1.01100 0.91040 0.98782 0.86329 1.21180 0.99474 1.00232 0.92694 1.20719 0.96104 0.82716 1.06547 1.25408 1.01075 1.00073 0.82837 1.74104 1.16949 0.99882 1.27170 1.74407 1.17058 1.22324 1.05487 1.27034 1.01285 0.87087 0.97749 1.46503 1.41696 1.15615 1.11779 1.22669 1.03764 0.90793 0.83455 1.21370 0.98315 0.94611 1.01021 1.20540 0.96026 0.83519 0.93581 0.92074 1.21235 0.98194 0.92956 0.85626 1.42484 1.78693 1.15676 1.01328 1.19589 1.35044 0.98083 0.84894 0.90765 1.25489 1.02734 0.96775 1.01222 1.69842 1.52774 1.10025 1.28805 0.85202 0.77705 0.77060 0.80125 1.22161 1.22039 1.19215 1.22426 1.07235 0.90355 0.98009 1.23223 0.94250 0.99355 1.03493 1.23035 0.96366 0.98615 1.03295 0.93684 0.87794 0.89171 0.93404 0.87617 0.86115 0.85911 0.73132 0.85154 0.85631 0.90775 0.92608 0.93957 0.96378 0.79532 0.94160 0.86171 0.88944 0.86299 0.86758 0.90141 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.07 1.46 8.89 127.77 1.14 2.60 16 2 N -0.59 -16.93 2.24 -822.61 -1.85 -18.77 16 3 C 0.51 16.26 6.05 87.66 0.53 16.79 16 4 O -0.59 -25.38 15.65 -3.01 -0.05 -25.42 16 5 C -0.10 -2.05 1.30 -12.90 -0.02 -2.06 16 6 H 0.12 1.93 5.99 -2.39 -0.01 1.92 16 7 C -0.10 -1.65 4.53 30.16 0.14 -1.52 16 8 C -0.02 -0.29 6.02 30.45 0.18 -0.11 16 9 C 0.18 3.86 7.02 138.82 0.98 4.83 16 10 N -0.34 -10.05 12.23 -50.01 -0.61 -10.66 16 11 N -0.35 -10.35 12.25 -60.28 -0.74 -11.09 16 12 C 0.16 3.29 12.83 180.25 2.31 5.60 16 13 N -0.47 -9.01 2.72 -515.32 -1.40 -10.41 16 14 C 0.11 1.72 6.53 86.40 0.56 2.28 16 15 C -0.11 -2.70 4.41 30.11 0.13 -2.57 16 16 C 0.17 5.42 2.58 44.99 0.12 5.53 16 17 H 0.06 2.48 6.91 -2.39 -0.02 2.47 16 18 C 0.15 5.59 4.19 86.38 0.36 5.96 16 19 N -0.74 -36.87 5.43 -343.45 -1.87 -38.74 16 20 C -0.24 -13.29 9.99 84.03 0.84 -12.45 16 21 H 0.07 3.87 7.83 -2.91 -0.02 3.84 16 22 C -0.07 -3.89 5.50 84.86 0.47 -3.43 16 23 N -0.96 -57.61 13.06 21.65 0.28 -57.33 16 24 Si 0.97 44.93 29.55 68.60 2.03 46.96 16 25 H -0.29 -13.71 7.11 99.48 0.71 -13.01 16 26 H -0.29 -13.61 7.11 99.48 0.71 -12.90 16 27 H -0.27 -11.59 7.11 99.48 0.71 -10.89 16 28 C -0.16 -3.69 4.99 -10.79 -0.05 -3.74 16 29 C -0.17 -3.21 9.44 30.62 0.29 -2.92 16 30 C -0.18 -3.72 9.94 30.62 0.30 -3.42 16 31 H 0.04 1.10 8.14 -2.39 -0.02 1.08 16 32 H 0.10 1.21 5.67 -2.39 -0.01 1.19 16 33 H 0.09 1.53 7.16 -2.39 -0.02 1.51 16 34 H 0.05 1.11 7.91 -2.39 -0.02 1.09 16 35 H 0.11 1.40 7.31 -2.39 -0.02 1.38 16 36 H 0.12 1.34 8.14 -2.38 -0.02 1.32 16 37 H 0.12 0.92 7.89 -2.39 -0.02 0.90 16 38 H 0.25 2.92 8.06 -2.91 -0.02 2.90 16 39 H 0.13 1.44 8.13 -2.39 -0.02 1.43 16 40 H 0.13 1.31 7.88 -2.38 -0.02 1.29 16 41 H 0.07 2.23 7.96 -2.39 -0.02 2.21 16 42 H 0.06 1.58 8.08 -2.39 -0.02 1.56 16 43 H 0.04 1.50 6.30 -2.38 -0.02 1.48 16 44 H 0.02 0.73 7.44 -2.39 -0.02 0.71 16 45 H 0.37 20.48 7.07 -92.71 -0.65 19.83 16 46 H 0.25 14.47 8.31 -92.70 -0.77 13.70 16 47 H 0.12 2.39 8.14 -2.39 -0.02 2.37 16 48 H 0.09 2.08 5.80 -2.39 -0.01 2.07 16 49 H 0.12 1.66 8.14 -2.39 -0.02 1.64 16 50 H 0.11 1.92 8.14 -2.39 -0.02 1.90 16 51 H 0.08 1.99 7.66 -2.39 -0.02 1.97 16 Total: -1.00 -83.50 398.72 4.37 -79.12 By element: Atomic # 1 Polarization: 34.68 SS G_CDS: 0.29 Total: 34.98 kcal Atomic # 6 Polarization: 3.10 SS G_CDS: 8.28 Total: 11.38 kcal Atomic # 7 Polarization: -140.83 SS G_CDS: -6.18 Total: -147.01 kcal Atomic # 8 Polarization: -25.38 SS G_CDS: -0.05 Total: -25.42 kcal Atomic # 14 Polarization: 44.93 SS G_CDS: 2.03 Total: 46.96 kcal Total: -83.50 4.37 -79.12 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001571364726.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 148.213 kcal (2) G-P(sol) polarization free energy of solvation -83.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 64.718 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.373 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.123 kcal (6) G-S(sol) free energy of system = (1) + (5) 69.091 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 6.79 seconds