Wall clock time and date at job start Wed Apr 1 2020 05:23:42 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53003 * 1 3 3 C 1.52999 * 109.46997 * 2 1 4 4 H 1.09000 * 109.47159 * 180.40532 * 3 2 1 5 5 C 1.52998 * 109.47662 * 60.39858 * 3 2 1 6 6 C 1.52999 * 109.46622 * 64.99695 * 5 3 2 7 7 F 1.39900 * 109.47011 * 65.00709 * 6 5 3 8 8 F 1.39901 * 109.46866 * 185.00120 * 6 5 3 9 9 C 1.50703 * 109.46816 * 300.39903 * 3 2 1 10 10 O 1.21280 * 120.00228 * 112.31853 * 9 3 2 11 11 N 1.34775 * 119.99962 * 292.31357 * 9 3 2 12 12 C 1.46503 * 119.99966 * 175.11452 * 11 9 3 13 13 C 1.52999 * 109.47181 * 180.02562 * 12 11 9 14 14 C 1.53009 * 109.47019 * 180.02562 * 13 12 11 15 15 N 1.46904 * 109.46774 * 179.97438 * 14 13 12 16 16 C 1.46899 * 111.00196 * 294.29969 * 15 14 13 17 17 C 1.53230 * 109.33922 * 172.74900 * 16 15 14 18 18 N 1.47078 * 108.52534 * 53.82801 * 17 16 15 19 19 C 1.36936 * 120.88101 * 128.83071 * 18 17 16 20 20 H 1.08004 * 120.00174 * 203.67169 * 19 18 17 21 21 C 1.38812 * 119.99962 * 23.67828 * 19 18 17 22 22 N 1.31616 * 120.00149 * 16.23156 * 21 19 18 23 23 Si 1.86795 * 119.99889 * 196.22795 * 21 19 18 24 24 H 1.48507 * 109.47278 * 60.00350 * 23 21 19 25 25 H 1.48503 * 109.47332 * 179.97438 * 23 21 19 26 26 H 1.48493 * 109.47587 * 300.00099 * 23 21 19 27 27 C 1.47086 * 118.23698 * 308.82000 * 18 17 16 28 28 C 1.46898 * 110.99393 * 169.99946 * 15 14 13 29 29 H 1.09002 * 109.47290 * 54.73894 * 1 2 3 30 30 H 1.08995 * 109.47483 * 294.73528 * 1 2 3 31 31 H 1.09002 * 109.47127 * 174.73318 * 1 2 3 32 32 H 1.08995 * 109.47059 * 119.99569 * 2 1 3 33 33 H 1.09000 * 109.47002 * 239.99805 * 2 1 3 34 34 H 1.08989 * 109.47478 * 185.00127 * 5 3 2 35 35 H 1.09002 * 109.46822 * 305.00245 * 5 3 2 36 36 H 1.09002 * 109.47369 * 305.00256 * 6 5 3 37 37 H 0.97000 * 120.00812 * 355.12149 * 11 9 3 38 38 H 1.09002 * 109.47026 * 300.00162 * 12 11 9 39 39 H 1.08997 * 109.47047 * 60.00141 * 12 11 9 40 40 H 1.09002 * 109.46900 * 299.99783 * 13 12 11 41 41 H 1.08997 * 109.47388 * 59.99894 * 13 12 11 42 42 H 1.09002 * 109.46987 * 299.99582 * 14 13 12 43 43 H 1.08997 * 109.47248 * 59.99660 * 14 13 12 44 44 H 1.09003 * 109.48951 * 292.70882 * 16 15 14 45 45 H 1.09003 * 109.49278 * 52.78867 * 16 15 14 46 46 H 1.09002 * 109.63143 * 294.12255 * 17 16 15 47 47 H 1.08998 * 109.62830 * 173.53980 * 17 16 15 48 48 H 0.96996 * 120.00214 * 179.97438 * 22 21 19 49 49 H 1.09000 * 109.62471 * 291.46925 * 27 18 17 50 50 H 1.09004 * 109.78564 * 170.98502 * 27 18 17 51 51 H 1.09003 * 109.49439 * 307.20684 * 28 15 14 52 52 H 1.09000 * 109.49567 * 67.29485 * 28 15 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4425 0.0000 4 1 3.1300 1.4425 -0.0073 5 6 1.5383 2.1610 1.2542 6 6 2.1565 1.5130 2.4947 7 9 3.5413 1.7117 2.4834 8 9 1.6114 2.0938 3.6448 9 6 1.5295 2.1557 -1.2255 10 8 0.7228 3.0541 -1.1124 11 7 1.9696 1.7952 -2.4473 12 6 1.3954 2.4138 -3.6447 13 6 2.0654 1.8315 -4.8909 14 6 1.4661 2.4781 -6.1415 15 7 2.1099 1.9193 -7.3379 16 6 3.5308 2.2880 -7.3919 17 6 4.2050 1.5419 -8.5482 18 7 3.4466 1.8064 -9.7803 19 6 4.0783 2.2416 -10.9147 20 1 3.5251 2.7859 -11.6658 21 6 5.4295 1.9830 -11.0992 22 7 6.0300 1.0671 -10.3693 23 14 6.3957 2.9350 -12.3836 24 1 6.3481 4.3847 -12.0648 25 1 7.8076 2.4747 -12.3827 26 1 5.7998 2.7031 -13.7238 27 6 1.9917 1.5909 -9.7618 28 6 1.4047 2.3350 -8.5577 29 1 -0.3634 0.5933 -0.8391 30 1 -0.3634 0.4300 0.9333 31 1 -0.3633 -1.0233 -0.0943 32 1 1.8933 -0.5137 0.8900 33 1 1.8933 -0.5139 -0.8900 34 1 1.8263 3.2112 1.2110 35 1 0.4523 2.0839 1.3070 36 1 1.9427 0.4442 2.4911 37 1 2.6665 1.1260 -2.5340 38 1 0.3249 2.2118 -3.6802 39 1 1.5611 3.4906 -3.6124 40 1 3.1360 2.0331 -4.8556 41 1 1.8994 0.7547 -4.9231 42 1 0.3954 2.2767 -6.1770 43 1 1.6325 3.5548 -6.1090 44 1 3.6220 3.3626 -7.5501 45 1 4.0131 2.0158 -6.4531 46 1 4.2066 0.4716 -8.3420 47 1 5.2289 1.8967 -8.6652 48 1 6.9742 0.8862 -10.4985 49 1 1.7806 0.5252 -9.6721 50 1 1.5500 1.9756 -10.6810 51 1 0.3451 2.0969 -8.4643 52 1 1.5255 3.4090 -8.6996 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001660883689.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:23:42 Heat of formation + Delta-G solvation = -150.862031 kcal Electronic energy + Delta-G solvation = -30750.003821 eV Core-core repulsion = 26226.218737 eV Total energy + Delta-G solvation = -4523.785084 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.71 seconds Orbital eigenvalues (eV) -49.90990 -47.92956 -41.16269 -39.78617 -37.30640 -36.70043 -35.82732 -33.65029 -32.00425 -31.60697 -31.50430 -28.86176 -27.78831 -25.82692 -24.54064 -24.49019 -24.06536 -22.55946 -22.17722 -20.81023 -20.37650 -18.75960 -18.67640 -18.48803 -17.70804 -17.28346 -17.02684 -16.82280 -16.71412 -16.28399 -16.08793 -15.65264 -15.39088 -15.32507 -15.20461 -14.93770 -14.80020 -14.68821 -14.42246 -14.29132 -14.15569 -13.74760 -13.69258 -13.38030 -13.29552 -12.93986 -12.92821 -12.81061 -12.61110 -12.53066 -12.42499 -12.29780 -12.07572 -11.95335 -11.94234 -11.76261 -11.74795 -11.66374 -11.50028 -11.30529 -10.78582 -10.57290 -10.10173 -9.26650 -8.70168 -7.86238 -5.29303 1.46624 1.48782 1.55562 1.60045 2.07095 2.50886 2.91435 3.03523 3.28183 3.30043 3.39857 3.59742 3.69267 3.81387 3.92754 3.95465 4.05999 4.07031 4.17747 4.30296 4.35842 4.39118 4.40333 4.48347 4.56687 4.62812 4.64684 4.67716 4.68526 4.70357 4.81266 4.89323 4.92394 4.93437 5.04664 5.12805 5.16316 5.16686 5.21840 5.27132 5.41323 5.42476 5.44921 5.59647 5.73364 6.18842 6.29139 6.38214 6.52986 7.13987 7.21734 7.85439 8.37315 9.19594 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.020751 B = 0.001633 C = 0.001571 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1349.035019 B =17142.822330 C =17820.673842 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.162 4.162 2 C -0.117 4.117 3 C -0.103 4.103 4 H 0.122 0.878 5 C -0.153 4.153 6 C 0.259 3.741 7 F -0.216 7.216 8 F -0.220 7.220 9 C 0.519 3.481 10 O -0.583 6.583 11 N -0.718 5.718 12 C 0.129 3.871 13 C -0.114 4.114 14 C 0.059 3.941 15 N -0.539 5.539 16 C 0.050 3.950 17 C 0.180 3.820 18 N -0.616 5.616 19 C -0.262 4.262 20 H 0.068 0.932 21 C -0.055 4.055 22 N -0.936 5.936 23 Si 0.969 3.031 24 H -0.281 1.281 25 H -0.293 1.293 26 H -0.276 1.276 27 C 0.143 3.857 28 C 0.054 3.946 29 H 0.034 0.966 30 H 0.061 0.939 31 H 0.072 0.928 32 H 0.101 0.899 33 H 0.088 0.912 34 H 0.073 0.927 35 H 0.104 0.896 36 H 0.151 0.849 37 H 0.416 0.584 38 H 0.066 0.934 39 H 0.054 0.946 40 H 0.069 0.931 41 H 0.084 0.916 42 H 0.087 0.913 43 H 0.027 0.973 44 H 0.012 0.988 45 H 0.086 0.914 46 H -0.001 1.001 47 H 0.064 0.936 48 H 0.250 0.750 49 H 0.018 0.982 50 H 0.059 0.941 51 H 0.095 0.905 52 H 0.020 0.980 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.317 -3.210 25.693 27.873 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.219 4.219 2 C -0.155 4.155 3 C -0.124 4.124 4 H 0.140 0.860 5 C -0.192 4.192 6 C 0.206 3.794 7 F -0.198 7.198 8 F -0.202 7.202 9 C 0.307 3.693 10 O -0.463 6.463 11 N -0.370 5.370 12 C 0.005 3.995 13 C -0.152 4.152 14 C -0.069 4.069 15 N -0.264 5.264 16 C -0.079 4.079 17 C 0.054 3.946 18 N -0.341 5.341 19 C -0.392 4.392 20 H 0.086 0.914 21 C -0.250 4.250 22 N -0.583 5.583 23 Si 0.797 3.203 24 H -0.207 1.207 25 H -0.219 1.219 26 H -0.202 1.202 27 C 0.017 3.983 28 C -0.075 4.075 29 H 0.053 0.947 30 H 0.080 0.920 31 H 0.091 0.909 32 H 0.120 0.880 33 H 0.107 0.893 34 H 0.092 0.908 35 H 0.123 0.877 36 H 0.168 0.832 37 H 0.253 0.747 38 H 0.084 0.916 39 H 0.072 0.928 40 H 0.087 0.913 41 H 0.103 0.897 42 H 0.106 0.894 43 H 0.045 0.955 44 H 0.030 0.970 45 H 0.104 0.896 46 H 0.017 0.983 47 H 0.083 0.917 48 H 0.060 0.940 49 H 0.036 0.964 50 H 0.077 0.923 51 H 0.114 0.886 52 H 0.038 0.962 Dipole moment (debyes) X Y Z Total from point charges -10.757 -3.118 25.766 28.095 hybrid contribution 1.140 1.287 -1.042 2.011 sum -9.617 -1.831 24.724 26.591 Atomic orbital electron populations 1.21911 0.95776 1.02498 1.01714 1.21677 0.96233 0.92154 1.05398 1.21333 1.03495 0.96971 0.90637 0.86029 1.22452 1.03637 1.01022 0.92052 1.22344 0.74001 1.00593 0.82437 1.92973 1.33210 1.96891 1.96718 1.92967 1.85771 1.87697 1.53727 1.20858 0.80664 0.82470 0.85343 1.90707 1.36203 1.32177 1.87191 1.45921 1.41810 1.44063 1.05182 1.21153 0.97850 0.97085 0.83415 1.21641 1.00325 1.01664 0.91586 1.22029 0.99427 0.96202 0.89269 1.61917 1.02242 1.59799 1.02447 1.22632 0.89102 0.96554 0.99658 1.20756 0.95419 0.94965 0.83463 1.44441 1.02882 1.78007 1.08722 1.19542 0.93345 1.27648 0.98678 0.91445 1.25720 0.99195 0.98737 1.01308 1.70152 1.10617 1.33060 1.44425 0.85314 0.77391 0.78397 0.79177 1.20690 1.21875 1.20183 1.21132 0.84090 0.96819 0.96221 1.22466 0.98199 0.96647 0.90196 0.94680 0.91960 0.90940 0.88031 0.89334 0.90791 0.87736 0.83198 0.74744 0.91594 0.92799 0.91272 0.89730 0.89435 0.95477 0.96989 0.89552 0.98262 0.91744 0.94046 0.96353 0.92266 0.88634 0.96202 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.43 9.27 71.98 0.67 -0.77 16 2 C -0.12 -0.65 5.47 30.60 0.17 -0.49 16 3 C -0.10 -1.05 2.46 -11.54 -0.03 -1.08 16 4 H 0.12 0.90 7.82 -2.39 -0.02 0.88 16 5 C -0.15 -1.89 4.00 30.59 0.12 -1.77 16 6 C 0.26 2.64 5.16 71.98 0.37 3.01 16 7 F -0.22 -3.08 16.93 44.97 0.76 -2.32 16 8 F -0.22 -3.44 17.34 44.97 0.78 -2.66 16 9 C 0.52 9.06 5.70 87.66 0.50 9.56 16 10 O -0.58 -15.32 16.02 -3.03 -0.05 -15.36 16 11 N -0.72 -10.51 5.55 -463.06 -2.57 -13.08 16 12 C 0.13 2.30 5.68 86.38 0.49 2.79 16 13 C -0.11 -2.14 5.26 30.60 0.16 -1.98 16 14 C 0.06 1.39 4.96 86.31 0.43 1.82 16 15 N -0.54 -17.36 4.63 -895.23 -4.14 -21.51 16 16 C 0.05 1.85 5.46 86.38 0.47 2.33 16 17 C 0.18 8.74 5.45 86.35 0.47 9.21 16 18 N -0.62 -31.43 3.05 -698.12 -2.13 -33.56 16 19 C -0.26 -14.55 9.68 84.03 0.81 -13.73 16 20 H 0.07 3.63 7.86 -2.91 -0.02 3.61 16 21 C -0.05 -3.07 4.99 84.86 0.42 -2.65 16 22 N -0.94 -55.09 10.88 21.65 0.24 -54.85 16 23 Si 0.97 44.91 29.58 68.60 2.03 46.94 16 24 H -0.28 -12.69 7.11 99.48 0.71 -11.98 16 25 H -0.29 -13.56 7.11 99.48 0.71 -12.86 16 26 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 27 C 0.14 5.96 6.69 86.35 0.58 6.53 16 28 C 0.05 1.81 5.62 86.38 0.49 2.30 16 29 H 0.03 0.49 7.02 -2.39 -0.02 0.48 16 30 H 0.06 0.51 6.62 -2.39 -0.02 0.49 16 31 H 0.07 0.50 8.14 -2.39 -0.02 0.48 16 32 H 0.10 0.09 6.44 -2.39 -0.02 0.07 16 33 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 34 H 0.07 1.23 8.07 -2.39 -0.02 1.21 16 35 H 0.10 1.34 6.30 -2.39 -0.02 1.33 16 36 H 0.15 0.38 6.34 -2.39 -0.02 0.37 16 37 H 0.42 3.90 8.48 -92.71 -0.79 3.12 16 38 H 0.07 1.22 8.14 -2.39 -0.02 1.20 16 39 H 0.05 1.12 8.14 -2.39 -0.02 1.10 16 40 H 0.07 1.37 6.40 -2.39 -0.02 1.35 16 41 H 0.08 1.54 8.14 -2.39 -0.02 1.52 16 42 H 0.09 1.80 7.97 -2.39 -0.02 1.79 16 43 H 0.03 0.67 8.12 -2.39 -0.02 0.65 16 44 H 0.01 0.47 8.14 -2.39 -0.02 0.45 16 45 H 0.09 2.77 6.16 -2.39 -0.01 2.75 16 46 H 0.00 -0.04 8.14 -2.39 -0.02 -0.06 16 47 H 0.06 3.54 5.85 -2.39 -0.01 3.52 16 48 H 0.25 14.26 8.31 -92.71 -0.77 13.49 16 49 H 0.02 0.79 8.14 -2.39 -0.02 0.77 16 50 H 0.06 2.36 7.95 -2.38 -0.02 2.34 16 51 H 0.10 2.56 7.99 -2.39 -0.02 2.54 16 52 H 0.02 0.70 8.14 -2.39 -0.02 0.68 16 Total: -1.00 -72.47 408.11 1.16 -71.31 By element: Atomic # 1 Polarization: 9.86 SS G_CDS: 0.13 Total: 9.99 kcal Atomic # 6 Polarization: 8.98 SS G_CDS: 6.12 Total: 15.10 kcal Atomic # 7 Polarization: -114.39 SS G_CDS: -8.61 Total: -122.99 kcal Atomic # 8 Polarization: -15.32 SS G_CDS: -0.05 Total: -15.36 kcal Atomic # 9 Polarization: -6.52 SS G_CDS: 1.54 Total: -4.98 kcal Atomic # 14 Polarization: 44.91 SS G_CDS: 2.03 Total: 46.94 kcal Total: -72.47 1.16 -71.31 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001660883689.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -79.554 kcal (2) G-P(sol) polarization free energy of solvation -72.473 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -152.027 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.165 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -71.308 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.862 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.71 seconds