Wall clock time and date at job start Wed Apr 1 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 H 1.09005 * 109.47604 * 185.45312 * 3 2 1 5 5 C 1.52996 * 109.47337 * 305.45574 * 3 2 1 6 6 C 1.53005 * 109.47257 * 293.33889 * 5 3 2 7 7 F 1.39897 * 109.47226 * 66.58727 * 6 5 3 8 8 F 1.39893 * 109.47265 * 186.59412 * 6 5 3 9 9 C 1.50702 * 109.47274 * 65.45480 * 3 2 1 10 10 O 1.21279 * 119.99926 * 240.00271 * 9 3 2 11 11 N 1.34782 * 119.99996 * 60.00061 * 9 3 2 12 12 C 1.46497 * 119.99993 * 180.02562 * 11 9 3 13 13 C 1.53002 * 109.47096 * 180.02562 * 12 11 9 14 14 N 1.46897 * 109.47170 * 180.02562 * 13 12 11 15 15 C 1.46849 * 111.00014 * 45.79162 * 14 13 12 16 16 C 1.53034 * 109.52264 * 185.83962 * 15 14 13 17 17 C 1.53120 * 109.28028 * 300.81716 * 16 15 14 18 18 N 1.46493 * 109.57718 * 177.59201 * 17 16 15 19 19 C 1.36939 * 120.00140 * 85.28647 * 18 17 16 20 20 H 1.07997 * 119.99706 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00087 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00004 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47272 * 60.00267 * 23 21 19 25 25 H 1.48501 * 109.47195 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47373 * 299.99957 * 23 21 19 27 27 C 1.53118 * 109.15882 * 57.65322 * 17 16 15 28 28 C 1.46846 * 111.00076 * 169.99762 * 14 13 12 29 29 H 1.09003 * 109.47350 * 66.46331 * 1 2 3 30 30 H 1.08999 * 109.46940 * 306.46718 * 1 2 3 31 31 H 1.09001 * 109.47125 * 186.46587 * 1 2 3 32 32 H 1.09000 * 109.47101 * 119.99923 * 2 1 3 33 33 H 1.09000 * 109.47354 * 239.99596 * 2 1 3 34 34 H 1.09005 * 109.47207 * 53.33554 * 5 3 2 35 35 H 1.09000 * 109.47594 * 173.33095 * 5 3 2 36 36 H 1.08999 * 109.46466 * 306.58992 * 6 5 3 37 37 H 0.97005 * 119.99372 * 0.02562 * 11 9 3 38 38 H 1.09001 * 109.46959 * 299.99773 * 12 11 9 39 39 H 1.08997 * 109.47348 * 60.00137 * 12 11 9 40 40 H 1.09008 * 109.46742 * 300.00006 * 13 12 11 41 41 H 1.08997 * 109.47043 * 59.99788 * 13 12 11 42 42 H 1.09004 * 109.45780 * 305.85428 * 15 14 13 43 43 H 1.08997 * 109.46631 * 65.82031 * 15 14 13 44 44 H 1.08998 * 109.50539 * 180.87347 * 16 15 14 45 45 H 1.08996 * 109.50511 * 60.75926 * 16 15 14 46 46 H 1.09000 * 109.52107 * 297.75143 * 17 16 15 47 47 H 0.96998 * 120.00030 * 265.28470 * 18 17 16 48 48 H 0.96994 * 120.00127 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.50460 * 182.40500 * 27 17 16 50 50 H 1.09001 * 109.50633 * 62.28769 * 27 17 16 51 51 H 1.09006 * 109.46409 * 294.17596 * 28 14 13 52 52 H 1.08998 * 109.46394 * 54.15218 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1257 1.4440 -0.0977 5 6 1.4212 2.2022 -1.1750 6 6 1.9482 1.6247 -2.4902 7 9 1.4774 0.3167 -2.6470 8 9 1.5024 2.4120 -3.5571 9 6 1.6510 2.1128 1.2924 10 8 0.9480 3.1009 1.2754 11 7 2.0844 1.6143 2.4673 12 6 1.7058 2.2656 3.7237 13 6 2.3253 1.5063 4.8987 14 7 1.9452 2.1591 6.1585 15 6 0.5116 2.4772 6.1748 16 6 0.1808 3.2829 7.4331 17 6 0.5547 2.4630 8.6712 18 7 0.2942 3.2507 9.8785 19 6 -0.9579 3.2600 10.4331 20 1 -1.7533 2.6869 9.9800 21 6 -1.2049 4.0067 11.5768 22 7 -0.2355 4.7055 12.1287 23 14 -2.9130 4.0199 12.3328 24 1 -3.2947 2.6374 12.7177 25 1 -2.9140 4.8869 13.5384 26 1 -3.8880 4.5455 11.3438 27 6 2.0417 2.1037 8.6056 28 6 2.3186 1.3323 7.3132 29 1 -0.3634 0.4104 -0.9422 30 1 -0.3633 0.6108 0.8264 31 1 -0.3633 -1.0211 0.1157 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 0.3364 2.1006 -1.1425 35 1 1.6894 3.2566 -1.1077 36 1 3.0381 1.6190 -2.4735 37 1 2.6469 0.8241 2.4808 38 1 2.0688 3.2934 3.7238 39 1 0.6202 2.2637 3.8212 40 1 1.9626 0.4783 4.8986 41 1 3.4108 1.5086 4.8009 42 1 0.2599 3.0639 5.2913 43 1 -0.0657 1.5527 6.1732 44 1 -0.8860 3.5055 7.4527 45 1 0.7474 4.2140 7.4286 46 1 -0.0399 1.5499 8.6966 47 1 1.0085 3.7656 10.2852 48 1 -0.4082 5.2276 12.9277 49 1 2.3044 1.4838 9.4628 50 1 2.6377 3.0162 8.6194 51 1 1.7328 0.4130 7.3064 52 1 3.3792 1.0874 7.2567 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001699992135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:36 Heat of formation + Delta-G solvation = -139.029774 kcal Electronic energy + Delta-G solvation = -30862.373373 eV Core-core repulsion = 26339.101374 eV Total energy + Delta-G solvation = -4523.271999 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 0.98 seconds Orbital eigenvalues (eV) -49.44551 -47.44651 -40.50508 -38.97442 -36.38685 -35.76662 -34.47691 -32.31646 -31.21793 -30.62232 -29.93914 -28.30338 -26.80258 -24.42092 -23.93859 -23.32200 -22.58889 -21.84389 -21.07080 -19.99991 -19.31680 -18.27347 -17.92612 -17.17467 -17.04914 -16.54049 -16.37203 -16.10321 -15.56896 -15.31773 -15.04743 -14.60755 -14.48512 -14.21287 -14.17739 -13.82841 -13.71476 -13.53600 -13.46366 -13.41044 -13.16646 -12.94950 -12.86168 -12.49079 -12.44629 -11.91839 -11.77630 -11.63876 -11.57134 -11.43368 -11.38061 -11.18402 -11.17588 -10.85474 -10.76914 -10.57580 -10.24617 -10.20215 -10.09909 -9.72239 -9.57341 -9.37540 -8.84560 -8.26435 -6.92724 -5.74219 -3.02733 2.26912 2.62831 3.38151 3.45021 3.49498 3.50417 3.72370 3.83382 3.99788 4.08137 4.33219 4.37928 4.44298 4.56590 4.60420 4.75760 4.85005 4.86697 5.02506 5.16247 5.18015 5.20300 5.32534 5.35291 5.41395 5.42350 5.54738 5.57472 5.60525 5.64881 5.66100 5.71855 5.75270 5.87629 5.88470 6.04066 6.05550 6.14234 6.27880 6.48483 6.51319 6.66257 6.88385 7.05919 7.11235 7.21662 7.24595 7.71105 7.84923 8.44591 9.55464 10.14228 10.49098 11.48395 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.001616 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.587922 B =17327.771676 C =17794.696042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.157 4.157 2 C -0.128 4.128 3 C -0.107 4.107 4 H 0.104 0.896 5 C -0.159 4.159 6 C 0.263 3.737 7 F -0.201 7.201 8 F -0.205 7.205 9 C 0.521 3.479 10 O -0.534 6.534 11 N -0.727 5.727 12 C 0.113 3.887 13 C 0.046 3.954 14 N -0.531 5.531 15 C 0.050 3.950 16 C -0.132 4.132 17 C 0.178 3.822 18 N -0.724 5.724 19 C -0.238 4.238 20 H 0.068 0.932 21 C -0.014 4.014 22 N -0.933 5.933 23 Si 0.906 3.094 24 H -0.287 1.287 25 H -0.291 1.291 26 H -0.286 1.286 27 C -0.121 4.121 28 C 0.064 3.936 29 H 0.061 0.939 30 H 0.054 0.946 31 H 0.059 0.941 32 H 0.069 0.931 33 H 0.090 0.910 34 H 0.101 0.899 35 H 0.105 0.895 36 H 0.110 0.890 37 H 0.399 0.601 38 H 0.079 0.921 39 H 0.074 0.926 40 H 0.036 0.964 41 H 0.078 0.922 42 H 0.073 0.927 43 H 0.029 0.971 44 H 0.064 0.936 45 H 0.065 0.935 46 H 0.041 0.959 47 H 0.384 0.616 48 H 0.255 0.745 49 H 0.067 0.933 50 H 0.069 0.931 51 H 0.031 0.969 52 H 0.069 0.931 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 10.328 -11.826 -29.203 33.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.165 4.165 3 C -0.129 4.129 4 H 0.122 0.878 5 C -0.197 4.197 6 C 0.209 3.791 7 F -0.183 7.183 8 F -0.186 7.186 9 C 0.307 3.693 10 O -0.410 6.410 11 N -0.379 5.379 12 C -0.010 4.010 13 C -0.083 4.083 14 N -0.257 5.257 15 C -0.078 4.078 16 C -0.173 4.173 17 C 0.067 3.933 18 N -0.364 5.364 19 C -0.370 4.370 20 H 0.086 0.914 21 C -0.210 4.210 22 N -0.581 5.581 23 Si 0.737 3.263 24 H -0.214 1.214 25 H -0.217 1.217 26 H -0.213 1.213 27 C -0.160 4.160 28 C -0.064 4.064 29 H 0.080 0.920 30 H 0.073 0.927 31 H 0.078 0.922 32 H 0.087 0.913 33 H 0.108 0.892 34 H 0.119 0.881 35 H 0.123 0.877 36 H 0.128 0.872 37 H 0.234 0.766 38 H 0.097 0.903 39 H 0.092 0.908 40 H 0.055 0.945 41 H 0.097 0.903 42 H 0.091 0.909 43 H 0.047 0.953 44 H 0.083 0.917 45 H 0.084 0.916 46 H 0.059 0.941 47 H 0.218 0.782 48 H 0.065 0.935 49 H 0.085 0.915 50 H 0.087 0.913 51 H 0.049 0.951 52 H 0.088 0.912 Dipole moment (debyes) X Y Z Total from point charges 9.860 -10.686 -29.094 32.525 hybrid contribution -0.943 -0.921 0.509 1.414 sum 8.916 -11.608 -28.585 32.115 Atomic orbital electron populations 1.21856 0.94976 1.02200 1.02359 1.21781 0.97410 0.93431 1.03922 1.21302 1.02198 0.96801 0.92561 0.87842 1.22571 1.04374 1.02033 0.90727 1.21928 0.98326 0.73721 0.85093 1.92943 1.90946 1.38366 1.96032 1.93000 1.91754 1.74597 1.59266 1.20305 0.79932 0.84115 0.84964 1.90755 1.37000 1.25861 1.87372 1.45922 1.53672 1.32258 1.06069 1.21581 1.00480 0.97511 0.81427 1.22216 1.00752 0.95783 0.89510 1.61991 1.18303 1.44522 1.00874 1.22314 0.86482 0.98912 1.00103 1.22315 1.01378 0.99702 0.93895 1.20232 0.92495 0.93433 0.87103 1.42406 1.10642 1.55925 1.27452 1.19194 0.88033 1.23522 1.06203 0.91366 1.24736 0.97545 1.00159 0.98560 1.69652 1.31106 1.34423 1.22961 0.86285 0.84161 0.77261 0.78582 1.21361 1.21707 1.21301 1.21861 0.98554 1.00488 0.95084 1.22057 0.99835 0.94039 0.90447 0.92014 0.92661 0.92177 0.91271 0.89170 0.88077 0.87688 0.87246 0.76647 0.90267 0.90753 0.94549 0.90321 0.90884 0.95297 0.91709 0.91645 0.94127 0.78241 0.93504 0.91464 0.91252 0.95051 0.91225 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.03 8.98 37.15 0.33 -0.70 16 2 C -0.13 -0.60 5.05 -26.74 -0.13 -0.73 16 3 C -0.11 -0.56 2.49 -91.78 -0.23 -0.78 16 4 H 0.10 0.26 8.13 -51.93 -0.42 -0.16 16 5 C -0.16 -0.96 4.08 -26.73 -0.11 -1.07 16 6 C 0.26 1.35 5.24 37.16 0.19 1.54 16 7 F -0.20 -1.30 13.77 2.25 0.03 -1.27 16 8 F -0.20 -1.60 17.34 2.25 0.04 -1.56 16 9 C 0.52 4.54 6.06 -10.98 -0.07 4.47 16 10 O -0.53 -7.03 15.88 5.56 0.09 -6.94 16 11 N -0.73 -5.28 5.41 -60.29 -0.33 -5.61 16 12 C 0.11 1.10 4.92 -4.04 -0.02 1.08 16 13 C 0.05 0.43 5.39 -3.82 -0.02 0.41 16 14 N -0.53 -6.78 4.81 -234.67 -1.13 -7.91 16 15 C 0.05 0.71 4.85 -3.83 -0.02 0.69 16 16 C -0.13 -2.39 5.68 -26.65 -0.15 -2.55 16 17 C 0.18 3.52 2.84 -67.81 -0.19 3.33 16 18 N -0.72 -18.22 5.13 -53.31 -0.27 -18.50 16 19 C -0.24 -6.64 9.93 -15.06 -0.15 -6.79 16 20 H 0.07 1.85 7.83 -52.49 -0.41 1.44 16 21 C -0.01 -0.41 5.50 -17.43 -0.10 -0.50 16 22 N -0.93 -28.34 13.06 55.49 0.72 -27.61 16 23 Si 0.91 22.55 29.55 -169.99 -5.02 17.52 16 24 H -0.29 -7.01 7.11 56.52 0.40 -6.61 16 25 H -0.29 -7.30 7.11 56.52 0.40 -6.90 16 26 H -0.29 -7.03 7.11 56.52 0.40 -6.63 16 27 C -0.12 -1.99 5.57 -26.65 -0.15 -2.14 16 28 C 0.06 0.83 5.42 -3.84 -0.02 0.81 16 29 H 0.06 0.43 6.02 -51.93 -0.31 0.12 16 30 H 0.05 0.46 7.20 -51.93 -0.37 0.09 16 31 H 0.06 0.36 8.14 -51.93 -0.42 -0.06 16 32 H 0.07 0.25 7.42 -51.93 -0.39 -0.14 16 33 H 0.09 0.38 5.91 -51.93 -0.31 0.07 16 34 H 0.10 0.76 6.11 -51.93 -0.32 0.45 16 35 H 0.10 0.69 7.90 -51.93 -0.41 0.28 16 36 H 0.11 0.21 8.13 -51.93 -0.42 -0.21 16 37 H 0.40 1.72 7.83 -40.82 -0.32 1.40 16 38 H 0.08 0.90 8.14 -51.93 -0.42 0.48 16 39 H 0.07 0.84 6.21 -51.93 -0.32 0.52 16 40 H 0.04 0.31 8.08 -51.92 -0.42 -0.11 16 41 H 0.08 0.63 8.14 -51.93 -0.42 0.21 16 42 H 0.07 0.99 5.81 -51.93 -0.30 0.68 16 43 H 0.03 0.41 8.14 -51.93 -0.42 -0.02 16 44 H 0.06 1.26 8.14 -51.93 -0.42 0.84 16 45 H 0.06 1.27 8.14 -51.93 -0.42 0.84 16 46 H 0.04 0.84 8.08 -51.93 -0.42 0.42 16 47 H 0.38 10.30 7.80 -40.82 -0.32 9.98 16 48 H 0.26 7.53 8.31 -40.82 -0.34 7.19 16 49 H 0.07 1.11 8.14 -51.93 -0.42 0.68 16 50 H 0.07 1.19 8.14 -51.93 -0.42 0.77 16 51 H 0.03 0.40 8.14 -51.93 -0.42 -0.02 16 52 H 0.07 0.77 8.12 -51.93 -0.42 0.35 16 LS Contribution 406.43 15.07 6.12 6.12 Total: -1.00 -33.33 406.43 -9.40 -42.72 By element: Atomic # 1 Polarization: 14.77 SS G_CDS: -8.82 Total: 5.95 kcal Atomic # 6 Polarization: -2.10 SS G_CDS: -0.83 Total: -2.93 kcal Atomic # 7 Polarization: -58.62 SS G_CDS: -1.00 Total: -59.62 kcal Atomic # 8 Polarization: -7.03 SS G_CDS: 0.09 Total: -6.94 kcal Atomic # 9 Polarization: -2.89 SS G_CDS: 0.07 Total: -2.82 kcal Atomic # 14 Polarization: 22.55 SS G_CDS: -5.02 Total: 17.52 kcal Total LS contribution 6.12 Total: 6.12 kcal Total: -33.33 -9.40 -42.72 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699992135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -96.308 kcal (2) G-P(sol) polarization free energy of solvation -33.327 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -129.635 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.395 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.722 kcal (6) G-S(sol) free energy of system = (1) + (5) -139.030 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.98 seconds