Wall clock time and date at job start Wed Apr 1 2020 05:24:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52995 * 1 3 3 C 1.52995 * 109.47376 * 2 1 4 4 H 1.09005 * 109.47604 * 185.45312 * 3 2 1 5 5 C 1.52996 * 109.47337 * 305.45574 * 3 2 1 6 6 C 1.53005 * 109.47257 * 293.33889 * 5 3 2 7 7 F 1.39897 * 109.47226 * 66.58727 * 6 5 3 8 8 F 1.39893 * 109.47265 * 186.59412 * 6 5 3 9 9 C 1.50702 * 109.47274 * 65.45480 * 3 2 1 10 10 O 1.21279 * 119.99926 * 240.00271 * 9 3 2 11 11 N 1.34782 * 119.99996 * 60.00061 * 9 3 2 12 12 C 1.46497 * 119.99993 * 180.02562 * 11 9 3 13 13 C 1.53002 * 109.47096 * 180.02562 * 12 11 9 14 14 N 1.46897 * 109.47170 * 180.02562 * 13 12 11 15 15 C 1.46849 * 111.00014 * 45.79162 * 14 13 12 16 16 C 1.53034 * 109.52264 * 185.83962 * 15 14 13 17 17 C 1.53120 * 109.28028 * 300.81716 * 16 15 14 18 18 N 1.46493 * 109.57718 * 177.59201 * 17 16 15 19 19 C 1.36939 * 120.00140 * 85.28647 * 18 17 16 20 20 H 1.07997 * 119.99706 * 359.97438 * 19 18 17 21 21 C 1.38814 * 120.00087 * 180.02562 * 19 18 17 22 22 N 1.31625 * 120.00004 * 359.97438 * 21 19 18 23 23 Si 1.86793 * 119.99941 * 179.97438 * 21 19 18 24 24 H 1.48502 * 109.47272 * 60.00267 * 23 21 19 25 25 H 1.48501 * 109.47195 * 179.97438 * 23 21 19 26 26 H 1.48495 * 109.47373 * 299.99957 * 23 21 19 27 27 C 1.53118 * 109.15882 * 57.65322 * 17 16 15 28 28 C 1.46846 * 111.00076 * 169.99762 * 14 13 12 29 29 H 1.09003 * 109.47350 * 66.46331 * 1 2 3 30 30 H 1.08999 * 109.46940 * 306.46718 * 1 2 3 31 31 H 1.09001 * 109.47125 * 186.46587 * 1 2 3 32 32 H 1.09000 * 109.47101 * 119.99923 * 2 1 3 33 33 H 1.09000 * 109.47354 * 239.99596 * 2 1 3 34 34 H 1.09005 * 109.47207 * 53.33554 * 5 3 2 35 35 H 1.09000 * 109.47594 * 173.33095 * 5 3 2 36 36 H 1.08999 * 109.46466 * 306.58992 * 6 5 3 37 37 H 0.97005 * 119.99372 * 0.02562 * 11 9 3 38 38 H 1.09001 * 109.46959 * 299.99773 * 12 11 9 39 39 H 1.08997 * 109.47348 * 60.00137 * 12 11 9 40 40 H 1.09008 * 109.46742 * 300.00006 * 13 12 11 41 41 H 1.08997 * 109.47043 * 59.99788 * 13 12 11 42 42 H 1.09004 * 109.45780 * 305.85428 * 15 14 13 43 43 H 1.08997 * 109.46631 * 65.82031 * 15 14 13 44 44 H 1.08998 * 109.50539 * 180.87347 * 16 15 14 45 45 H 1.08996 * 109.50511 * 60.75926 * 16 15 14 46 46 H 1.09000 * 109.52107 * 297.75143 * 17 16 15 47 47 H 0.96998 * 120.00030 * 265.28470 * 18 17 16 48 48 H 0.96994 * 120.00127 * 179.97438 * 22 21 19 49 49 H 1.09003 * 109.50460 * 182.40500 * 27 17 16 50 50 H 1.09001 * 109.50633 * 62.28769 * 27 17 16 51 51 H 1.09006 * 109.46409 * 294.17596 * 28 14 13 52 52 H 1.08998 * 109.46394 * 54.15218 * 28 14 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5299 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 1 3.1257 1.4440 -0.0977 5 6 1.4212 2.2022 -1.1750 6 6 1.9482 1.6247 -2.4902 7 9 1.4774 0.3167 -2.6470 8 9 1.5024 2.4120 -3.5571 9 6 1.6510 2.1128 1.2924 10 8 0.9480 3.1009 1.2754 11 7 2.0844 1.6143 2.4673 12 6 1.7058 2.2656 3.7237 13 6 2.3253 1.5063 4.8987 14 7 1.9452 2.1591 6.1585 15 6 0.5116 2.4772 6.1748 16 6 0.1808 3.2829 7.4331 17 6 0.5547 2.4630 8.6712 18 7 0.2942 3.2507 9.8785 19 6 -0.9579 3.2600 10.4331 20 1 -1.7533 2.6869 9.9800 21 6 -1.2049 4.0067 11.5768 22 7 -0.2355 4.7055 12.1287 23 14 -2.9130 4.0199 12.3328 24 1 -3.2947 2.6374 12.7177 25 1 -2.9140 4.8869 13.5384 26 1 -3.8880 4.5455 11.3438 27 6 2.0417 2.1037 8.6056 28 6 2.3186 1.3323 7.3132 29 1 -0.3634 0.4104 -0.9422 30 1 -0.3633 0.6108 0.8264 31 1 -0.3633 -1.0211 0.1157 32 1 1.8933 -0.5138 0.8900 33 1 1.8933 -0.5139 -0.8899 34 1 0.3364 2.1006 -1.1425 35 1 1.6894 3.2566 -1.1077 36 1 3.0381 1.6190 -2.4735 37 1 2.6469 0.8241 2.4808 38 1 2.0688 3.2934 3.7238 39 1 0.6202 2.2637 3.8212 40 1 1.9626 0.4783 4.8986 41 1 3.4108 1.5086 4.8009 42 1 0.2599 3.0639 5.2913 43 1 -0.0657 1.5527 6.1732 44 1 -0.8860 3.5055 7.4527 45 1 0.7474 4.2140 7.4286 46 1 -0.0399 1.5499 8.6966 47 1 1.0085 3.7656 10.2852 48 1 -0.4082 5.2276 12.9277 49 1 2.3044 1.4838 9.4628 50 1 2.6377 3.0162 8.6194 51 1 1.7328 0.4130 7.3064 52 1 3.3792 1.0874 7.2567 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001699992135.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:34 Heat of formation + Delta-G solvation = -162.765444 kcal Electronic energy + Delta-G solvation = -30863.402629 eV Core-core repulsion = 26339.101374 eV Total energy + Delta-G solvation = -4524.301255 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.13 seconds Orbital eigenvalues (eV) -49.90192 -47.92337 -41.19536 -40.13180 -37.26519 -36.68304 -35.75083 -33.99484 -31.92790 -31.67789 -31.45554 -29.38497 -27.53563 -26.03358 -24.68192 -24.36689 -23.63537 -22.78835 -22.14056 -20.79613 -20.53416 -19.10130 -18.72952 -18.38941 -17.78854 -17.36027 -16.98292 -16.81961 -16.66890 -16.24057 -16.02957 -15.80519 -15.48439 -15.36054 -15.24693 -14.93179 -14.67999 -14.65545 -14.31168 -14.18506 -14.01807 -13.91912 -13.85175 -13.39240 -13.12614 -13.00736 -12.97681 -12.85373 -12.67132 -12.49848 -12.27707 -12.22864 -12.17714 -12.04798 -11.88879 -11.83282 -11.76207 -11.60898 -11.50804 -11.17645 -10.84673 -10.79501 -10.11053 -9.25752 -8.99645 -7.94289 -5.22605 1.45412 1.48397 1.54464 1.61355 1.99841 2.55471 2.90176 3.10546 3.38070 3.39384 3.41632 3.62563 3.76101 3.81563 3.87343 3.96525 4.02071 4.08275 4.09573 4.20041 4.32262 4.33337 4.36913 4.41849 4.50540 4.55260 4.59470 4.69719 4.70422 4.74654 4.88273 4.91842 4.94021 4.96324 4.97184 4.98881 5.11822 5.12423 5.19619 5.22483 5.38310 5.40974 5.43690 5.48823 5.60211 6.09629 6.16955 6.28294 6.53380 7.24473 7.33543 8.10995 8.34184 9.28984 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.022953 B = 0.001616 C = 0.001573 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1219.587922 B =17327.771676 C =17794.696042 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.158 4.158 2 C -0.123 4.123 3 C -0.097 4.097 4 H 0.144 0.856 5 C -0.159 4.159 6 C 0.262 3.738 7 F -0.209 7.209 8 F -0.223 7.223 9 C 0.517 3.483 10 O -0.586 6.586 11 N -0.712 5.712 12 C 0.120 3.880 13 C 0.054 3.946 14 N -0.544 5.544 15 C 0.063 3.937 16 C -0.124 4.124 17 C 0.171 3.829 18 N -0.738 5.738 19 C -0.240 4.240 20 H 0.072 0.928 21 C -0.077 4.077 22 N -0.969 5.969 23 Si 0.971 3.029 24 H -0.277 1.277 25 H -0.295 1.295 26 H -0.280 1.280 27 C -0.113 4.113 28 C 0.072 3.928 29 H 0.051 0.949 30 H 0.031 0.969 31 H 0.065 0.935 32 H 0.088 0.912 33 H 0.103 0.897 34 H 0.077 0.923 35 H 0.096 0.904 36 H 0.154 0.846 37 H 0.418 0.582 38 H 0.059 0.941 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.103 0.897 42 H 0.079 0.921 43 H 0.035 0.965 44 H 0.042 0.958 45 H 0.047 0.953 46 H 0.035 0.965 47 H 0.372 0.628 48 H 0.250 0.750 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.040 0.960 52 H 0.100 0.900 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.039 -14.322 -30.917 36.137 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C -0.160 4.160 3 C -0.118 4.118 4 H 0.162 0.838 5 C -0.197 4.197 6 C 0.209 3.791 7 F -0.190 7.190 8 F -0.205 7.205 9 C 0.305 3.695 10 O -0.466 6.466 11 N -0.365 5.365 12 C -0.005 4.005 13 C -0.074 4.074 14 N -0.270 5.270 15 C -0.065 4.065 16 C -0.164 4.164 17 C 0.063 3.937 18 N -0.377 5.377 19 C -0.372 4.372 20 H 0.090 0.910 21 C -0.269 4.269 22 N -0.620 5.620 23 Si 0.800 3.200 24 H -0.203 1.203 25 H -0.221 1.221 26 H -0.207 1.207 27 C -0.152 4.152 28 C -0.056 4.056 29 H 0.070 0.930 30 H 0.050 0.950 31 H 0.084 0.916 32 H 0.107 0.893 33 H 0.122 0.878 34 H 0.095 0.905 35 H 0.114 0.886 36 H 0.171 0.829 37 H 0.256 0.744 38 H 0.077 0.923 39 H 0.073 0.927 40 H 0.073 0.927 41 H 0.121 0.879 42 H 0.097 0.903 43 H 0.053 0.947 44 H 0.061 0.939 45 H 0.066 0.934 46 H 0.053 0.947 47 H 0.204 0.796 48 H 0.059 0.941 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.058 0.942 52 H 0.118 0.882 Dipole moment (debyes) X Y Z Total from point charges 11.593 -13.256 -30.858 35.529 hybrid contribution -1.475 -0.160 0.982 1.779 sum 10.119 -13.416 -29.875 34.277 Atomic orbital electron populations 1.21855 0.96907 1.01871 1.00868 1.21803 0.95596 0.93129 1.05506 1.21334 1.04398 0.96307 0.89804 0.83837 1.22516 1.03162 1.01944 0.92096 1.22267 1.00326 0.72826 0.83646 1.92925 1.91287 1.38812 1.95983 1.92965 1.92169 1.75197 1.60124 1.20978 0.78858 0.83438 0.86254 1.90739 1.39369 1.28391 1.88122 1.45749 1.53364 1.32487 1.04917 1.21331 0.99278 0.97002 0.82851 1.22235 1.02069 0.96000 0.87058 1.61915 1.16805 1.45742 1.02512 1.22086 0.88059 0.98538 0.97853 1.22107 0.99638 0.99337 0.95350 1.20489 0.95058 0.92521 0.85655 1.42633 1.09493 1.56486 1.29076 1.19566 0.89144 1.22520 1.05938 0.91001 1.25546 1.01261 1.00588 0.99518 1.69812 1.33056 1.35725 1.23414 0.85243 0.79869 0.77423 0.77432 1.20330 1.22113 1.20662 1.21747 0.95418 1.00534 0.97510 1.21997 1.01818 0.93350 0.88389 0.93008 0.94964 0.91625 0.89331 0.87833 0.90468 0.88570 0.82874 0.74413 0.92259 0.92741 0.92688 0.87904 0.90272 0.94681 0.93916 0.93433 0.94695 0.79648 0.94083 0.91673 0.92338 0.94151 0.88206 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -1.94 8.98 71.98 0.65 -1.29 16 2 C -0.12 -0.78 5.05 30.59 0.15 -0.63 16 3 C -0.10 -0.75 2.49 -11.54 -0.03 -0.78 16 4 H 0.14 0.03 8.13 -2.38 -0.02 0.01 16 5 C -0.16 -1.77 4.08 30.59 0.12 -1.65 16 6 C 0.26 2.13 5.24 71.98 0.38 2.51 16 7 F -0.21 -2.25 13.77 44.97 0.62 -1.63 16 8 F -0.22 -3.28 17.34 44.97 0.78 -2.50 16 9 C 0.52 8.29 6.06 87.66 0.53 8.82 16 10 O -0.59 -15.73 15.88 -3.03 -0.05 -15.78 16 11 N -0.71 -8.53 5.41 -463.06 -2.51 -11.04 16 12 C 0.12 2.12 4.92 86.38 0.43 2.54 16 13 C 0.05 0.81 5.39 86.30 0.46 1.28 16 14 N -0.54 -12.60 4.81 -896.36 -4.31 -16.91 16 15 C 0.06 1.74 4.85 86.32 0.42 2.16 16 16 C -0.12 -4.57 5.68 30.65 0.17 -4.40 16 17 C 0.17 6.85 2.84 45.07 0.13 6.98 16 18 N -0.74 -38.11 5.13 -322.57 -1.65 -39.77 16 19 C -0.24 -13.60 9.93 84.03 0.83 -12.77 16 20 H 0.07 3.93 7.83 -2.91 -0.02 3.91 16 21 C -0.08 -4.51 5.50 84.86 0.47 -4.04 16 22 N -0.97 -60.33 13.06 21.65 0.28 -60.05 16 23 Si 0.97 46.98 29.55 68.60 2.03 49.01 16 24 H -0.28 -12.85 7.11 99.48 0.71 -12.14 16 25 H -0.29 -14.33 7.11 99.48 0.71 -13.63 16 26 H -0.28 -13.15 7.11 99.48 0.71 -12.45 16 27 C -0.11 -3.63 5.57 30.65 0.17 -3.46 16 28 C 0.07 1.66 5.42 86.33 0.47 2.13 16 29 H 0.05 0.73 6.02 -2.39 -0.01 0.71 16 30 H 0.03 0.54 7.20 -2.39 -0.02 0.52 16 31 H 0.06 0.71 8.14 -2.39 -0.02 0.69 16 32 H 0.09 0.25 7.42 -2.39 -0.02 0.24 16 33 H 0.10 0.48 5.91 -2.39 -0.01 0.46 16 34 H 0.08 1.23 6.11 -2.38 -0.01 1.21 16 35 H 0.10 1.25 7.90 -2.39 -0.02 1.23 16 36 H 0.15 -0.04 8.13 -2.39 -0.02 -0.06 16 37 H 0.42 1.85 7.83 -92.70 -0.73 1.12 16 38 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 39 H 0.05 1.20 6.21 -2.39 -0.01 1.18 16 40 H 0.05 0.68 8.08 -2.38 -0.02 0.66 16 41 H 0.10 1.14 8.14 -2.39 -0.02 1.12 16 42 H 0.08 2.11 5.81 -2.38 -0.01 2.10 16 43 H 0.03 0.93 8.14 -2.39 -0.02 0.91 16 44 H 0.04 1.72 8.14 -2.39 -0.02 1.70 16 45 H 0.05 1.90 8.14 -2.39 -0.02 1.88 16 46 H 0.03 1.44 8.08 -2.39 -0.02 1.42 16 47 H 0.37 20.67 7.80 -92.71 -0.72 19.95 16 48 H 0.25 15.15 8.31 -92.71 -0.77 14.38 16 49 H 0.06 2.09 8.14 -2.39 -0.02 2.07 16 50 H 0.06 1.99 8.14 -2.39 -0.02 1.97 16 51 H 0.04 0.88 8.14 -2.38 -0.02 0.86 16 52 H 0.10 1.77 8.12 -2.39 -0.02 1.75 16 Total: -1.00 -76.21 406.43 0.03 -76.18 By element: Atomic # 1 Polarization: 25.60 SS G_CDS: -0.52 Total: 25.08 kcal Atomic # 6 Polarization: -7.96 SS G_CDS: 5.36 Total: -2.60 kcal Atomic # 7 Polarization: -119.58 SS G_CDS: -8.19 Total: -127.77 kcal Atomic # 8 Polarization: -15.73 SS G_CDS: -0.05 Total: -15.78 kcal Atomic # 9 Polarization: -5.53 SS G_CDS: 1.40 Total: -4.13 kcal Atomic # 14 Polarization: 46.98 SS G_CDS: 2.03 Total: 49.01 kcal Total: -76.21 0.03 -76.18 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001699992135.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -86.587 kcal (2) G-P(sol) polarization free energy of solvation -76.208 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -162.796 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.030 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.178 kcal (6) G-S(sol) free energy of system = (1) + (5) -162.765 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.13 seconds