Wall clock time and date at job start Wed Apr 1 2020 04:31:22 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46500 * 1 3 3 C 1.36939 * 120.00257 * 2 1 4 4 H 1.07994 * 120.00062 * 203.80985 * 3 2 1 5 5 C 1.38813 * 119.99700 * 23.80712 * 3 2 1 6 6 N 1.31626 * 120.00075 * 11.33216 * 5 3 2 7 7 Si 1.86796 * 120.00005 * 191.33347 * 5 3 2 8 8 H 1.48502 * 109.47162 * 359.97438 * 7 5 3 9 9 H 1.48491 * 109.47166 * 119.99965 * 7 5 3 10 10 H 1.48505 * 109.47144 * 240.00476 * 7 5 3 11 11 C 1.46501 * 119.99924 * 179.97438 * 2 1 3 12 12 C 1.53000 * 109.46872 * 90.00228 * 11 2 1 13 13 C 1.53047 * 109.45671 * 175.00171 * 12 11 2 14 14 C 1.53194 * 109.30984 * 181.37285 * 13 12 11 15 15 N 1.46928 * 108.77356 * 305.35980 * 14 13 12 16 16 C 1.34775 * 120.63082 * 233.58353 * 15 14 13 17 17 O 1.21590 * 120.00231 * 7.38678 * 16 15 14 18 18 C 1.47529 * 119.99819 * 187.37886 * 16 15 14 19 19 C 1.36594 * 125.76816 * 186.67039 * 18 16 15 20 20 N 1.34815 * 106.83692 * 180.13844 * 19 18 16 21 21 C 1.46501 * 126.59338 * 179.90639 * 20 19 18 22 22 C 1.53786 * 113.61410 * 13.85243 * 21 20 19 23 23 C 1.53951 * 87.01858 * 220.04653 * 22 21 20 24 24 C 1.53780 * 113.61645 * 276.24561 * 21 20 19 25 25 N 1.40210 * 106.81057 * 359.65284 * 20 19 18 26 26 N 1.28756 * 108.36854 * 0.22194 * 25 20 19 27 27 C 1.46923 * 118.73811 * 53.86849 * 15 14 13 28 28 C 1.53046 * 109.44998 * 295.05812 * 12 11 2 29 29 H 1.09000 * 109.47079 * 276.99501 * 1 2 3 30 30 H 1.09003 * 109.47245 * 36.99664 * 1 2 3 31 31 H 1.08997 * 109.46954 * 156.99811 * 1 2 3 32 32 H 0.96997 * 119.99394 * 179.97438 * 6 5 3 33 33 H 1.09005 * 109.47115 * 330.00348 * 11 2 1 34 34 H 1.09002 * 109.47153 * 210.00449 * 11 2 1 35 35 H 1.08999 * 109.46465 * 55.02604 * 12 11 2 36 36 H 1.08999 * 109.49904 * 61.42157 * 13 12 11 37 37 H 1.08993 * 109.52327 * 301.33714 * 13 12 11 38 38 H 1.09000 * 109.58795 * 185.57857 * 14 13 12 39 39 H 1.08996 * 109.70727 * 65.22212 * 14 13 12 40 40 H 1.08001 * 126.58172 * 0.02562 * 19 18 16 41 41 H 1.09001 * 112.84812 * 145.04872 * 21 20 19 42 42 H 1.09001 * 113.61389 * 334.57110 * 22 21 20 43 43 H 1.09004 * 113.61242 * 105.46378 * 22 21 20 44 44 H 1.09003 * 113.53780 * 270.80892 * 23 22 21 45 45 H 1.08995 * 113.74274 * 139.95150 * 23 22 21 46 46 H 1.08998 * 113.61075 * 254.52712 * 24 21 20 47 47 H 1.08994 * 113.61441 * 25.43532 * 24 21 20 48 48 H 1.08999 * 109.59313 * 65.92162 * 27 15 14 49 49 H 1.09002 * 109.58776 * 186.35099 * 27 15 14 50 50 H 1.08998 * 109.49766 * 298.57363 * 28 12 11 51 51 H 1.08998 * 109.49259 * 58.67076 * 28 12 11 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1498 1.1859 0.0000 4 1 3.1608 1.2257 -0.3776 5 6 1.5443 2.3369 0.4853 6 7 0.4087 2.2548 1.1458 7 14 2.3410 4.0023 0.2008 8 1 3.6023 3.8238 -0.5623 9 1 1.4140 4.8693 -0.5700 10 1 2.6404 4.6378 1.5092 11 6 2.1975 -1.2687 0.0006 12 6 2.4525 -1.7110 -1.4418 13 6 3.3240 -2.9691 -1.4427 14 6 3.6057 -3.3891 -2.8887 15 7 2.3262 -3.5409 -3.5948 16 6 2.0319 -4.6844 -4.2446 17 8 2.7647 -5.6490 -4.1400 18 6 0.8205 -4.7658 -5.0828 19 6 0.3416 -5.8936 -5.6864 20 7 -0.7735 -5.5356 -6.3542 21 6 -1.6313 -6.4125 -7.1551 22 6 -1.3630 -7.9099 -6.9298 23 6 -1.5495 -8.0894 -8.4474 24 6 -1.1302 -6.6172 -8.5945 25 7 -0.9576 -4.1638 -6.1300 26 7 -0.0009 -3.7437 -5.3776 27 6 1.3762 -2.4201 -3.5843 28 6 1.1172 -2.0129 -2.1259 29 1 -0.3633 0.1252 1.0200 30 1 -0.3634 0.8208 -0.6184 31 1 -0.3633 -0.9459 -0.4016 32 1 -0.0141 3.0591 1.4852 33 1 1.6083 -2.0282 0.5147 34 1 3.1499 -1.1382 0.5144 35 1 2.9646 -0.9140 -1.9809 36 1 2.8018 -3.7738 -0.9252 37 1 4.2654 -2.7604 -0.9346 38 1 4.1417 -4.3382 -2.8958 39 1 4.2073 -2.6261 -3.3826 40 1 0.7742 -6.8820 -5.6394 41 1 -2.6859 -6.1438 -7.0940 42 1 -0.3515 -8.1253 -6.5856 43 1 -2.1287 -8.4057 -6.3331 44 1 -2.5821 -8.2806 -8.7395 45 1 -0.8461 -8.7907 -8.8961 46 1 -1.7083 -6.0710 -9.3398 47 1 -0.0550 -6.4786 -8.7063 48 1 1.7987 -1.5778 -4.1322 49 1 0.4407 -2.7296 -4.0504 50 1 0.6158 -2.8267 -1.6019 51 1 0.4879 -1.1232 -2.1040 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001713764215.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:31:22 Heat of formation + Delta-G solvation = 118.741832 kcal Electronic energy + Delta-G solvation = -30924.257117 eV Core-core repulsion = 26862.852120 eV Total energy + Delta-G solvation = -4061.404997 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.30 seconds Orbital eigenvalues (eV) -42.56950 -39.94098 -39.24291 -37.56157 -35.39595 -33.65857 -32.79169 -31.48534 -30.57954 -30.32911 -27.24427 -26.55094 -26.47879 -25.75315 -24.25606 -23.20669 -22.60959 -22.45034 -20.83726 -20.16870 -20.09211 -19.24932 -17.93701 -16.74476 -16.52669 -16.39980 -16.02975 -15.92210 -15.15646 -14.91286 -14.77338 -14.21092 -13.96679 -13.76690 -13.61294 -13.55126 -13.34089 -13.20429 -13.05751 -13.00119 -12.58675 -12.36869 -12.14922 -11.98615 -11.86896 -11.53608 -11.32358 -11.14415 -11.07080 -10.85089 -10.83852 -10.63435 -10.58656 -10.50672 -10.23343 -10.08711 -9.89448 -9.79374 -9.68928 -9.51303 -9.43181 -8.52412 -8.38697 -6.60187 -5.61769 -3.10043 0.89094 1.55921 1.71199 3.02675 3.23458 3.42793 3.46896 3.49915 3.51872 3.67688 3.97060 3.98935 4.02407 4.35933 4.57178 4.58388 4.72012 4.84464 4.90314 5.02717 5.09420 5.13209 5.19605 5.23544 5.25011 5.37103 5.38777 5.50182 5.56495 5.57441 5.61601 5.81586 5.88804 6.01500 6.09963 6.19146 6.24540 6.28127 6.42042 6.53133 6.63383 6.66829 6.78807 6.89929 7.00512 7.11536 7.46337 7.47607 7.76132 7.85440 7.89820 8.16727 8.50473 9.34262 9.98352 10.47997 11.41608 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.018618 B = 0.002195 C = 0.002070 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1503.521258 B =12753.366118 C =13523.948524 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.160 3.840 2 N -0.601 5.601 3 C -0.248 4.248 4 H 0.067 0.933 5 C -0.001 4.001 6 N -0.909 5.909 7 Si 0.902 3.098 8 H -0.279 1.279 9 H -0.291 1.291 10 H -0.292 1.292 11 C 0.158 3.842 12 C -0.109 4.109 13 C -0.126 4.126 14 C 0.113 3.887 15 N -0.588 5.588 16 C 0.602 3.398 17 O -0.552 6.552 18 C -0.093 4.093 19 C 0.090 3.910 20 N -0.350 5.350 21 C 0.121 3.879 22 C -0.147 4.147 23 C -0.135 4.135 24 C -0.145 4.145 25 N -0.066 5.066 26 N -0.200 5.200 27 C 0.083 3.917 28 C -0.120 4.120 29 H 0.030 0.970 30 H 0.035 0.965 31 H 0.002 0.998 32 H 0.250 0.750 33 H 0.032 0.968 34 H 0.045 0.955 35 H 0.070 0.930 36 H 0.061 0.939 37 H 0.072 0.928 38 H 0.087 0.913 39 H 0.067 0.933 40 H 0.201 0.799 41 H 0.135 0.865 42 H 0.096 0.904 43 H 0.089 0.911 44 H 0.092 0.908 45 H 0.084 0.916 46 H 0.086 0.914 47 H 0.092 0.908 48 H 0.066 0.934 49 H 0.123 0.877 50 H 0.053 0.947 51 H 0.088 0.912 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -3.499 -23.032 -19.110 30.132 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.016 3.984 2 N -0.324 5.324 3 C -0.377 4.377 4 H 0.084 0.916 5 C -0.199 4.199 6 N -0.555 5.555 7 Si 0.733 3.267 8 H -0.204 1.204 9 H -0.217 1.217 10 H -0.219 1.219 11 C 0.030 3.970 12 C -0.131 4.131 13 C -0.165 4.165 14 C -0.009 4.009 15 N -0.319 5.319 16 C 0.388 3.612 17 O -0.430 6.430 18 C -0.232 4.232 19 C -0.067 4.067 20 N -0.134 5.134 21 C 0.020 3.980 22 C -0.186 4.186 23 C -0.173 4.173 24 C -0.184 4.184 25 N -0.045 5.045 26 N -0.073 5.073 27 C -0.040 4.040 28 C -0.158 4.158 29 H 0.049 0.951 30 H 0.054 0.946 31 H 0.021 0.979 32 H 0.060 0.940 33 H 0.051 0.949 34 H 0.063 0.937 35 H 0.089 0.911 36 H 0.080 0.920 37 H 0.091 0.909 38 H 0.106 0.894 39 H 0.086 0.914 40 H 0.218 0.782 41 H 0.153 0.847 42 H 0.115 0.885 43 H 0.108 0.892 44 H 0.110 0.890 45 H 0.103 0.897 46 H 0.104 0.896 47 H 0.110 0.890 48 H 0.085 0.915 49 H 0.140 0.860 50 H 0.071 0.929 51 H 0.106 0.894 Dipole moment (debyes) X Y Z Total from point charges -4.145 -22.169 -19.274 29.666 hybrid contribution 0.806 0.279 0.066 0.855 sum -3.339 -21.890 -19.208 29.313 Atomic orbital electron populations 1.20869 0.82865 0.95093 0.99599 1.43862 1.01721 1.00649 1.86164 1.19206 0.98529 0.85847 1.34163 0.91553 1.25048 0.97877 0.98503 0.98477 1.70077 1.19008 1.26963 1.39450 0.86214 0.78628 0.84581 0.77320 1.20379 1.21741 1.21880 1.20747 0.95871 0.88207 0.92147 1.21870 0.94911 0.95594 1.00714 1.21923 1.00748 0.98775 0.95012 1.21685 0.84289 1.02191 0.92724 1.47963 1.19165 1.14554 1.50252 1.16803 0.82794 0.82890 0.78762 1.90762 1.50933 1.36139 1.65145 1.21482 1.01828 0.90298 1.09625 1.23178 0.88383 1.01360 0.93754 1.50569 1.18723 1.09492 1.34664 1.23456 0.95442 0.88114 0.91024 1.23513 1.04165 0.92453 0.98472 1.22742 1.03046 0.96449 0.95102 1.23446 1.02841 0.97213 0.94885 1.82050 1.18532 0.87752 1.16129 1.74506 1.00533 1.25076 1.07185 1.22746 0.94466 0.88195 0.98588 1.22037 0.98557 1.01629 0.93569 0.95128 0.94587 0.97931 0.93971 0.94939 0.93662 0.91121 0.91996 0.90926 0.89430 0.91427 0.78217 0.84746 0.88544 0.89230 0.88968 0.89728 0.89551 0.88978 0.91545 0.86026 0.92856 0.89389 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.00 7.81 59.85 0.47 4.47 16 2 N -0.60 -15.17 2.74 -181.12 -0.50 -15.67 16 3 C -0.25 -6.86 9.66 -15.06 -0.15 -7.00 16 4 H 0.07 1.81 7.85 -52.49 -0.41 1.39 16 5 C 0.00 -0.04 5.15 -17.43 -0.09 -0.13 16 6 N -0.91 -27.06 10.65 55.49 0.59 -26.46 16 7 Si 0.90 22.27 29.57 -169.99 -5.03 17.25 16 8 H -0.28 -6.69 7.11 56.52 0.40 -6.29 16 9 H -0.29 -7.22 7.11 56.52 0.40 -6.82 16 10 H -0.29 -7.26 7.11 56.52 0.40 -6.85 16 11 C 0.16 3.27 5.13 -4.04 -0.02 3.25 16 12 C -0.11 -1.91 2.36 -90.57 -0.21 -2.12 16 13 C -0.13 -1.83 5.36 -26.61 -0.14 -1.97 16 14 C 0.11 1.58 6.44 -3.71 -0.02 1.55 16 15 N -0.59 -8.77 2.97 -173.73 -0.52 -9.29 16 16 C 0.60 9.02 7.68 -12.47 -0.10 8.92 16 17 O -0.55 -9.07 16.30 5.29 0.09 -8.99 16 18 C -0.09 -1.23 6.70 -83.55 -0.56 -1.79 16 19 C 0.09 0.87 10.50 -16.83 -0.18 0.70 16 20 N -0.35 -3.19 3.83 -53.77 -0.21 -3.39 16 21 C 0.12 0.62 5.05 -67.12 -0.34 0.28 16 22 C -0.15 -0.44 7.47 -25.83 -0.19 -0.63 16 23 C -0.14 -0.29 8.09 -25.83 -0.21 -0.50 16 24 C -0.15 -0.57 7.88 -25.92 -0.20 -0.77 16 25 N -0.07 -0.84 13.78 60.35 0.83 -0.01 16 26 N -0.20 -2.82 8.77 32.85 0.29 -2.53 16 27 C 0.08 1.27 6.12 -3.49 -0.02 1.24 16 28 C -0.12 -2.03 4.42 -26.38 -0.12 -2.15 16 29 H 0.03 0.84 7.21 -51.93 -0.37 0.46 16 30 H 0.04 0.96 7.48 -51.93 -0.39 0.57 16 31 H 0.00 0.05 6.29 -51.93 -0.33 -0.28 16 32 H 0.25 7.21 8.31 -40.82 -0.34 6.87 16 33 H 0.03 0.65 8.07 -51.93 -0.42 0.23 16 34 H 0.04 0.94 8.04 -51.93 -0.42 0.53 16 35 H 0.07 1.35 8.14 -51.93 -0.42 0.92 16 36 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 37 H 0.07 0.97 8.14 -51.93 -0.42 0.55 16 38 H 0.09 1.21 7.00 -51.93 -0.36 0.84 16 39 H 0.07 0.89 8.14 -51.93 -0.42 0.47 16 40 H 0.20 1.34 6.78 -52.49 -0.36 0.99 16 41 H 0.13 0.56 8.14 -51.93 -0.42 0.14 16 42 H 0.10 0.28 6.39 -51.93 -0.33 -0.05 16 43 H 0.09 0.20 8.14 -51.93 -0.42 -0.22 16 44 H 0.09 0.11 8.14 -51.93 -0.42 -0.31 16 45 H 0.08 0.15 8.14 -51.93 -0.42 -0.27 16 46 H 0.09 0.30 8.14 -51.93 -0.42 -0.12 16 47 H 0.09 0.44 8.14 -51.93 -0.42 0.02 16 48 H 0.07 1.02 8.14 -51.93 -0.42 0.60 16 49 H 0.12 1.87 4.09 -81.82 -0.33 1.54 16 50 H 0.05 0.90 8.14 -51.93 -0.42 0.48 16 51 H 0.09 1.68 5.90 -51.93 -0.31 1.37 16 LS Contribution 396.85 15.07 5.98 5.98 Total: -1.00 -33.73 396.85 -8.79 -42.51 By element: Atomic # 1 Polarization: 5.49 SS G_CDS: -8.24 Total: -2.75 kcal Atomic # 6 Polarization: 5.43 SS G_CDS: -2.08 Total: 3.34 kcal Atomic # 7 Polarization: -57.84 SS G_CDS: 0.49 Total: -57.35 kcal Atomic # 8 Polarization: -9.07 SS G_CDS: 0.09 Total: -8.99 kcal Atomic # 14 Polarization: 22.27 SS G_CDS: -5.03 Total: 17.25 kcal Total LS contribution 5.98 Total: 5.98 kcal Total: -33.73 -8.79 -42.51 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713764215.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 161.256 kcal (2) G-P(sol) polarization free energy of solvation -33.725 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 127.530 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.789 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -42.514 kcal (6) G-S(sol) free energy of system = (1) + (5) 118.742 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.30 seconds