Wall clock time and date at job start Wed Apr 1 2020 04:34:13 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46506 * 1 3 3 C 1.46499 * 119.99826 * 2 1 4 4 C 1.38397 * 119.99917 * 179.72487 * 2 1 3 5 5 C 1.39897 * 120.00019 * 4.72399 * 4 2 1 6 6 N 1.31456 * 120.01512 * 179.70898 * 5 4 2 7 7 C 1.33280 * 120.00647 * 0.56614 * 6 5 4 8 8 C 1.47812 * 120.00165 * 179.72880 * 7 6 5 9 9 O 1.21566 * 120.00183 * 179.97438 * 8 7 6 10 10 N 1.34780 * 120.00463 * 359.97438 * 8 7 6 11 11 C 1.46494 * 120.00407 * 174.99398 * 10 8 7 12 12 H 1.08998 * 109.47463 * 326.50564 * 11 10 8 13 13 C 1.53003 * 109.47115 * 206.50724 * 11 10 8 14 14 N 1.46500 * 109.47274 * 55.00247 * 13 11 10 15 15 C 1.36935 * 119.99903 * 180.02562 * 14 13 11 16 16 H 1.07993 * 120.00273 * 359.97438 * 15 14 13 17 17 C 1.38818 * 119.99687 * 179.97438 * 15 14 13 18 18 N 1.31619 * 119.99630 * 179.97438 * 17 15 14 19 19 Si 1.86801 * 119.99934 * 359.97438 * 17 15 14 20 20 H 1.48501 * 109.46720 * 90.00208 * 19 17 15 21 21 H 1.48507 * 109.46886 * 209.99840 * 19 17 15 22 22 H 1.48496 * 109.47290 * 330.00023 * 19 17 15 23 23 C 1.52999 * 109.46845 * 86.50787 * 11 10 8 24 24 C 1.54272 * 110.03271 * 180.56133 * 23 11 10 25 25 C 1.54887 * 104.19612 * 217.10615 * 24 23 11 26 26 C 1.54884 * 102.75037 * 37.94575 * 25 24 23 27 27 C 1.53877 * 110.03154 * 63.39882 * 23 11 10 28 28 C 1.39414 * 119.99871 * 359.71099 * 7 6 5 29 29 N 1.32052 * 119.98386 * 359.97438 * 28 7 6 30 30 H 1.08993 * 109.46877 * 0.02562 * 1 2 3 31 31 H 1.09005 * 109.46929 * 120.00146 * 1 2 3 32 32 H 1.09005 * 109.46914 * 239.99926 * 1 2 3 33 33 H 1.09000 * 109.47269 * 90.00382 * 3 2 1 34 34 H 1.09008 * 109.46833 * 210.00155 * 3 2 1 35 35 H 1.08997 * 109.46820 * 329.99435 * 3 2 1 36 36 H 1.08004 * 119.99222 * 359.97438 * 5 4 2 37 37 H 0.97009 * 119.99444 * 355.00009 * 10 8 7 38 38 H 1.09001 * 109.47011 * 175.00404 * 13 11 10 39 39 H 1.09000 * 109.47100 * 295.00008 * 13 11 10 40 40 H 0.96997 * 120.00123 * 359.97438 * 14 13 11 41 41 H 0.97006 * 119.99978 * 180.02562 * 18 17 15 42 42 H 1.08999 * 110.01939 * 302.00347 * 23 11 10 43 43 H 1.09003 * 110.48244 * 335.78891 * 24 23 11 44 44 H 1.09001 * 110.48522 * 98.42160 * 24 23 11 45 45 H 1.09000 * 110.75576 * 279.62532 * 25 24 23 46 46 H 1.09004 * 110.91065 * 156.33316 * 25 24 23 47 47 H 1.09000 * 110.48810 * 203.37930 * 26 25 24 48 48 H 1.08992 * 110.60230 * 80.78959 * 26 25 24 49 49 H 1.09000 * 110.02742 * 238.56316 * 27 23 11 50 50 H 1.08992 * 110.03480 * 359.97438 * 27 23 11 51 51 H 1.07991 * 120.00846 * 180.02562 * 28 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4651 0.0000 0.0000 3 6 2.1975 1.2687 0.0000 4 6 2.1570 -1.1985 0.0058 5 6 1.4611 -2.4085 -0.0882 6 7 2.1185 -3.5469 -0.0885 7 6 3.4475 -3.5492 0.0120 8 6 4.1861 -4.8295 0.0177 9 8 5.3983 -4.8316 0.1090 10 7 3.5156 -5.9948 -0.0783 11 6 4.2518 -7.2570 -0.1832 12 1 5.1749 -7.0941 -0.7394 13 6 3.3916 -8.2898 -0.9142 14 7 2.9733 -7.7482 -2.2095 15 6 2.1900 -8.4990 -3.0448 16 1 1.8808 -9.4906 -2.7490 17 6 1.7932 -7.9856 -4.2720 18 7 1.0407 -8.7075 -5.0751 19 14 2.3273 -6.2702 -4.7835 20 1 3.6175 -6.3509 -5.5144 21 1 1.2942 -5.6730 -5.6675 22 1 2.4949 -5.4231 -3.5754 23 6 4.5849 -7.7711 1.2188 24 6 5.3731 -9.0938 1.1232 25 6 4.8440 -9.9378 2.3092 26 6 3.3350 -9.5894 2.3304 27 6 3.2890 -8.0862 1.9863 28 6 4.1410 -2.3439 0.1115 29 7 3.4809 -1.2002 0.1056 30 1 -0.3633 1.0276 -0.0005 31 1 -0.3633 -0.5139 -0.8900 32 1 -0.3633 -0.5139 0.8900 33 1 2.3792 1.5834 1.0276 34 1 3.1500 1.1384 -0.5139 35 1 1.6084 2.0283 -0.5139 36 1 0.3838 -2.4071 -0.1648 37 1 2.5455 -5.9976 -0.0780 38 1 3.9710 -9.1997 -1.0708 39 1 2.5107 -8.5188 -0.3145 40 1 3.2506 -6.8575 -2.4752 41 1 0.7637 -8.3488 -5.9328 42 1 5.1680 -7.0264 1.7605 43 1 5.1662 -9.5936 0.1768 44 1 6.4419 -8.9097 1.2327 45 1 5.3230 -9.6375 3.2411 46 1 4.9921 -11.0021 2.1260 47 1 2.9163 -9.7669 3.3210 48 1 2.7970 -10.1690 1.5804 49 1 3.2437 -7.4951 2.9010 50 1 2.4228 -7.8725 1.3602 51 1 5.2179 -2.3455 0.1926 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001716817760.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:34:13 Heat of formation + Delta-G solvation = 9.815717 kcal Electronic energy + Delta-G solvation = -31289.004437 eV Core-core repulsion = 27222.876049 eV Total energy + Delta-G solvation = -4066.128387 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.31 seconds Orbital eigenvalues (eV) -42.33268 -41.01944 -39.34528 -37.96624 -36.88794 -35.52767 -34.99269 -33.31370 -32.18964 -30.97030 -29.54104 -29.36846 -28.08250 -27.35521 -25.34132 -24.88161 -23.87788 -23.09878 -22.02409 -21.33460 -20.28958 -19.67708 -19.20697 -18.67279 -18.28465 -17.30122 -16.99308 -16.80677 -16.45252 -16.22949 -16.13148 -15.67527 -15.61850 -15.47500 -15.21396 -14.85402 -14.68226 -14.63726 -14.34034 -14.07806 -13.67330 -13.52155 -13.39952 -13.31903 -12.94965 -12.91233 -12.75128 -12.56857 -12.46899 -12.25351 -12.19481 -11.91383 -11.86412 -11.85320 -11.70423 -11.45343 -11.34431 -11.18790 -11.13774 -10.97674 -10.22175 -10.04275 -9.29641 -8.84860 -8.04722 -5.36348 -0.48750 0.03655 1.31592 1.33114 1.39573 1.65525 1.68312 2.10438 2.43254 2.75690 3.03929 3.19009 3.27983 3.33775 3.47478 3.70475 3.75387 3.86783 3.95041 4.00521 4.09896 4.19344 4.33845 4.41658 4.46918 4.47003 4.47664 4.60246 4.70848 4.71880 4.73588 4.85766 4.86854 4.88305 4.91359 4.93480 5.03905 5.08058 5.14956 5.17709 5.31043 5.32824 5.49898 5.56208 5.59186 5.61724 5.75551 5.90484 6.19296 6.24514 6.47093 6.73468 7.05041 7.11588 7.81303 7.99341 9.16804 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.007777 B = 0.003867 C = 0.002875 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3599.697578 B = 7238.505906 C = 9736.995675 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.077 3.923 2 N -0.591 5.591 3 C 0.089 3.911 4 C 0.368 3.632 5 C 0.000 4.000 6 N -0.390 5.390 7 C -0.077 4.077 8 C 0.581 3.419 9 O -0.568 6.568 10 N -0.695 5.695 11 C 0.148 3.852 12 H 0.071 0.929 13 C 0.150 3.850 14 N -0.757 5.757 15 C -0.225 4.225 16 H 0.067 0.933 17 C -0.052 4.052 18 N -0.978 5.978 19 Si 0.942 3.058 20 H -0.286 1.286 21 H -0.292 1.292 22 H -0.266 1.266 23 C -0.088 4.088 24 C -0.124 4.124 25 C -0.116 4.116 26 C -0.123 4.123 27 C -0.118 4.118 28 C 0.172 3.828 29 N -0.521 5.521 30 H 0.112 0.888 31 H 0.071 0.929 32 H 0.075 0.925 33 H 0.061 0.939 34 H 0.062 0.938 35 H 0.099 0.901 36 H 0.198 0.802 37 H 0.412 0.588 38 H 0.049 0.951 39 H 0.046 0.954 40 H 0.361 0.639 41 H 0.258 0.742 42 H 0.069 0.931 43 H 0.067 0.933 44 H 0.071 0.929 45 H 0.074 0.926 46 H 0.074 0.926 47 H 0.076 0.924 48 H 0.059 0.941 49 H 0.065 0.935 50 H 0.058 0.942 51 H 0.186 0.814 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.754 17.456 18.212 25.238 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.064 4.064 2 N -0.301 5.301 3 C -0.053 4.053 4 C 0.126 3.874 5 C -0.175 4.175 6 N -0.106 5.106 7 C -0.216 4.216 8 C 0.367 3.633 9 O -0.448 6.448 10 N -0.344 5.344 11 C 0.043 3.957 12 H 0.089 0.911 13 C 0.024 3.976 14 N -0.403 5.403 15 C -0.356 4.356 16 H 0.085 0.915 17 C -0.244 4.244 18 N -0.629 5.629 19 Si 0.771 3.229 20 H -0.212 1.212 21 H -0.218 1.218 22 H -0.191 1.191 23 C -0.108 4.108 24 C -0.162 4.162 25 C -0.153 4.153 26 C -0.160 4.160 27 C -0.155 4.155 28 C 0.010 3.990 29 N -0.244 5.244 30 H 0.130 0.870 31 H 0.089 0.911 32 H 0.093 0.907 33 H 0.079 0.921 34 H 0.081 0.919 35 H 0.117 0.883 36 H 0.215 0.785 37 H 0.248 0.752 38 H 0.067 0.933 39 H 0.063 0.937 40 H 0.194 0.806 41 H 0.067 0.933 42 H 0.088 0.912 43 H 0.085 0.915 44 H 0.089 0.911 45 H 0.093 0.907 46 H 0.093 0.907 47 H 0.094 0.906 48 H 0.078 0.922 49 H 0.083 0.917 50 H 0.077 0.923 51 H 0.203 0.797 Dipole moment (debyes) X Y Z Total from point charges 1.415 17.416 18.198 25.228 hybrid contribution -0.233 0.862 -1.010 1.348 sum 1.182 18.278 17.188 25.117 Atomic orbital electron populations 1.22196 0.75213 1.05897 1.03073 1.46644 1.07210 1.02468 1.73773 1.21881 0.97552 0.83325 1.02524 1.19907 0.89647 0.88779 0.89108 1.23655 1.02545 0.85988 1.05321 1.68088 1.07736 1.30367 1.04380 1.21488 0.91182 0.95245 1.13653 1.17752 0.86303 0.83377 0.75888 1.90730 1.13907 1.87639 1.52529 1.45829 1.11234 1.05250 1.72080 1.21236 0.94919 0.82593 0.96909 0.91084 1.21199 0.96588 0.94889 0.84952 1.42736 1.62123 1.17081 1.18311 1.19049 1.21648 0.98187 0.96738 0.91523 1.25266 1.00689 1.01229 0.97214 1.69844 1.42581 1.38928 1.11546 0.85601 0.77293 0.81970 0.78015 1.21227 1.21814 1.19106 1.22012 0.97285 0.97893 0.93622 1.22516 0.99506 0.94440 0.99753 1.22439 0.95176 0.99755 0.97929 1.22360 0.96986 0.95021 1.01665 1.22199 0.96714 0.97156 0.99469 1.23526 1.01847 0.85830 0.87794 1.68180 1.07007 1.28901 1.20344 0.86954 0.91055 0.90682 0.92090 0.91873 0.88252 0.78526 0.75192 0.93343 0.93654 0.80593 0.93338 0.91231 0.91460 0.91069 0.90719 0.90733 0.90566 0.92231 0.91652 0.92306 0.79702 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.52 9.40 127.77 1.20 1.72 16 2 N -0.59 -8.48 3.37 -753.45 -2.54 -11.02 16 3 C 0.09 0.98 10.38 127.77 1.33 2.31 16 4 C 0.37 8.06 7.36 133.35 0.98 9.04 16 5 C 0.00 -0.01 10.49 85.15 0.89 0.89 16 6 N -0.39 -11.57 9.70 -183.78 -1.78 -13.36 16 7 C -0.08 -2.41 6.74 41.74 0.28 -2.12 16 8 C 0.58 20.18 7.77 86.78 0.67 20.86 16 9 O -0.57 -21.60 16.02 -3.92 -0.06 -21.66 16 10 N -0.69 -23.47 4.04 -445.43 -1.80 -25.27 16 11 C 0.15 4.94 1.86 44.99 0.08 5.03 16 12 H 0.07 2.63 7.61 -2.39 -0.02 2.61 16 13 C 0.15 5.70 5.27 86.38 0.46 6.15 16 14 N -0.76 -36.24 5.24 -343.45 -1.80 -38.04 16 15 C -0.23 -12.91 10.47 84.04 0.88 -12.03 16 16 H 0.07 4.10 8.06 -2.91 -0.02 4.07 16 17 C -0.05 -3.11 5.50 84.86 0.47 -2.64 16 18 N -0.98 -62.90 13.97 21.65 0.30 -62.59 16 19 Si 0.94 47.87 27.74 68.60 1.90 49.77 16 20 H -0.29 -14.45 7.11 99.48 0.71 -13.74 16 21 H -0.29 -14.72 7.11 99.48 0.71 -14.01 16 22 H -0.27 -12.87 6.52 99.48 0.65 -12.22 16 23 C -0.09 -2.40 2.96 -10.07 -0.03 -2.43 16 24 C -0.12 -3.01 6.19 31.67 0.20 -2.81 16 25 C -0.12 -2.32 6.91 31.88 0.22 -2.10 16 26 C -0.12 -2.65 6.83 31.67 0.22 -2.44 16 27 C -0.12 -2.90 5.62 31.32 0.18 -2.73 16 28 C 0.17 4.77 10.76 84.94 0.91 5.68 16 29 N -0.52 -13.20 9.31 -191.73 -1.78 -14.98 16 30 H 0.11 0.18 7.79 -2.39 -0.02 0.16 16 31 H 0.07 0.47 7.76 -2.38 -0.02 0.45 16 32 H 0.07 0.41 8.09 -2.38 -0.02 0.39 16 33 H 0.06 0.61 8.14 -2.39 -0.02 0.59 16 34 H 0.06 0.94 7.46 -2.38 -0.02 0.92 16 35 H 0.10 0.51 7.92 -2.39 -0.02 0.50 16 36 H 0.20 3.16 6.71 -2.91 -0.02 3.14 16 37 H 0.41 14.01 7.88 -92.70 -0.73 13.28 16 38 H 0.05 1.85 6.30 -2.39 -0.02 1.83 16 39 H 0.05 1.70 6.12 -2.39 -0.01 1.68 16 40 H 0.36 17.47 5.20 -92.71 -0.48 16.99 16 41 H 0.26 15.83 8.31 -92.70 -0.77 15.06 16 42 H 0.07 2.01 8.14 -2.39 -0.02 1.99 16 43 H 0.07 1.79 5.85 -2.39 -0.01 1.77 16 44 H 0.07 1.61 8.14 -2.39 -0.02 1.59 16 45 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 46 H 0.07 1.37 8.14 -2.39 -0.02 1.35 16 47 H 0.08 1.40 8.14 -2.39 -0.02 1.38 16 48 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 49 H 0.06 1.49 8.14 -2.39 -0.02 1.47 16 50 H 0.06 1.61 5.85 -2.39 -0.01 1.59 16 51 H 0.19 4.72 7.63 -2.92 -0.02 4.70 16 Total: -1.00 -75.59 404.31 1.06 -74.52 By element: Atomic # 1 Polarization: 40.58 SS G_CDS: -0.31 Total: 40.27 kcal Atomic # 6 Polarization: 13.43 SS G_CDS: 8.94 Total: 22.37 kcal Atomic # 7 Polarization: -155.87 SS G_CDS: -9.40 Total: -165.27 kcal Atomic # 8 Polarization: -21.60 SS G_CDS: -0.06 Total: -21.66 kcal Atomic # 14 Polarization: 47.87 SS G_CDS: 1.90 Total: 49.77 kcal Total: -75.59 1.06 -74.52 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001716817760.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 84.339 kcal (2) G-P(sol) polarization free energy of solvation -75.586 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 8.753 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.062 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -74.523 kcal (6) G-S(sol) free energy of system = (1) + (5) 9.816 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.31 seconds