Wall clock time and date at job start Wed Apr 1 2020 05:41:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46891 * 1 3 3 C 1.46898 * 111.00350 * 2 1 4 4 C 1.46900 * 111.00273 * 123.95783 * 2 1 3 5 5 C 1.52993 * 109.47309 * 66.04084 * 4 2 1 6 6 C 1.53000 * 109.47592 * 180.02562 * 5 4 2 7 7 C 1.52993 * 109.47592 * 179.97438 * 6 5 4 8 8 C 1.50705 * 109.47255 * 179.97438 * 7 6 5 9 9 O 1.21280 * 119.99657 * 0.02562 * 8 7 6 10 10 N 1.34776 * 120.00099 * 180.02562 * 8 7 6 11 11 C 1.46499 * 120.00206 * 180.02562 * 10 8 7 12 12 C 1.53000 * 109.47285 * 179.97438 * 11 10 8 13 13 H 1.08995 * 109.49470 * 304.93417 * 12 11 10 14 14 C 1.53190 * 109.49746 * 64.99545 * 12 11 10 15 15 N 1.46922 * 108.77372 * 174.58701 * 14 12 11 16 16 C 1.36936 * 120.63154 * 126.37206 * 15 14 12 17 17 H 1.08003 * 120.00008 * 331.82900 * 16 15 14 18 18 C 1.38816 * 120.00065 * 151.82884 * 16 15 14 19 19 N 1.31611 * 119.99995 * 343.08507 * 18 16 15 20 20 Si 1.86802 * 120.00001 * 163.08439 * 18 16 15 21 21 H 1.48506 * 109.47149 * 89.99727 * 20 18 16 22 22 H 1.48487 * 109.47276 * 210.00082 * 20 18 16 23 23 H 1.48501 * 109.46876 * 330.00110 * 20 18 16 24 24 C 1.46930 * 118.73924 * 306.38835 * 15 14 12 25 25 C 1.53194 * 108.77257 * 53.61080 * 24 15 14 26 26 C 1.53034 * 109.31432 * 305.36403 * 25 24 15 27 27 F 1.39898 * 109.46051 * 301.34555 * 26 25 24 28 28 F 1.39900 * 109.46367 * 181.38635 * 26 25 24 29 29 H 1.09005 * 109.47456 * 59.99818 * 1 2 3 30 30 H 1.08998 * 109.47167 * 299.99935 * 1 2 3 31 31 H 1.09003 * 109.47326 * 179.97438 * 1 2 3 32 32 H 1.09003 * 109.46946 * 63.95326 * 3 2 1 33 33 H 1.08993 * 109.47347 * 183.95615 * 3 2 1 34 34 H 1.09003 * 109.46799 * 303.95568 * 3 2 1 35 35 H 1.08994 * 109.47391 * 186.04942 * 4 2 1 36 36 H 1.09004 * 109.46990 * 306.04683 * 4 2 1 37 37 H 1.09002 * 109.47820 * 300.00509 * 5 4 2 38 38 H 1.08998 * 109.47178 * 60.00695 * 5 4 2 39 39 H 1.09007 * 109.47090 * 300.00909 * 6 5 4 40 40 H 1.09000 * 109.47075 * 59.99824 * 6 5 4 41 41 H 1.08994 * 109.47595 * 300.00368 * 7 6 5 42 42 H 1.09002 * 109.46729 * 60.00517 * 7 6 5 43 43 H 0.97003 * 119.99905 * 359.97438 * 10 8 7 44 44 H 1.09004 * 109.46439 * 299.99612 * 11 10 8 45 45 H 1.09000 * 109.47512 * 59.99267 * 11 10 8 46 46 H 1.08996 * 109.58915 * 294.37873 * 14 12 11 47 47 H 1.09003 * 109.58313 * 54.80041 * 14 12 11 48 48 H 0.97003 * 119.99811 * 180.02562 * 19 18 16 49 49 H 1.08998 * 109.58451 * 173.39627 * 24 15 14 50 50 H 1.08997 * 109.58763 * 293.82648 * 24 15 14 51 51 H 1.08997 * 109.49814 * 65.31607 * 25 24 15 52 52 H 1.08994 * 109.49250 * 185.41179 * 25 24 15 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4689 0.0000 0.0000 3 6 1.9954 1.3714 0.0000 4 6 1.9954 -0.7660 1.1375 5 6 1.6314 -2.2426 0.9703 6 6 2.1792 -3.0404 2.1553 7 6 1.8146 -4.5169 1.9884 8 6 2.3548 -5.3027 3.1554 9 8 2.9703 -4.7374 4.0343 10 7 2.1538 -6.6337 3.2224 11 6 2.6784 -7.3976 4.3570 12 6 2.3139 -8.8742 4.1901 13 1 1.2356 -8.9706 4.0640 14 6 3.0254 -9.4402 2.9571 15 7 2.7698 -10.8852 2.8855 16 6 2.2573 -11.4475 1.7470 17 1 1.6299 -10.8624 1.0909 18 6 2.5444 -12.7696 1.4359 19 7 3.5498 -13.3810 2.0254 20 14 1.5035 -13.6810 0.1808 21 1 2.0855 -13.4960 -1.1729 22 1 1.4783 -15.1275 0.5153 23 1 0.1192 -13.1438 0.2020 24 6 3.0741 -11.7155 4.0589 25 6 2.3620 -11.1239 5.2795 26 6 2.7555 -9.6528 5.4314 27 9 4.1437 -9.5540 5.5740 28 9 2.1317 -9.1179 6.5635 29 1 -0.3634 0.5139 -0.8900 30 1 -0.3633 0.5138 0.8900 31 1 -0.3634 -1.0277 -0.0005 32 1 1.7044 1.8723 0.9233 33 1 3.0827 1.3432 -0.0709 34 1 1.5897 1.9163 -0.8525 35 1 3.0796 -0.6611 1.1756 36 1 1.5611 -0.3874 2.0628 37 1 0.5471 -2.3476 0.9322 38 1 2.0657 -2.6214 0.0451 39 1 3.2635 -2.9355 2.1938 40 1 1.7446 -2.6616 3.0804 41 1 0.7304 -4.6214 1.9502 42 1 2.2490 -4.8960 1.0634 43 1 1.6612 -7.0858 2.5196 44 1 3.7627 -7.2927 4.3953 45 1 2.2439 -7.0188 5.2821 46 1 2.6413 -8.9562 2.0592 47 1 4.0976 -9.2624 3.0403 48 1 3.7506 -14.3047 1.8078 49 1 2.7220 -12.7328 3.8879 50 1 4.1502 -11.7232 4.2319 51 1 1.2833 -11.1998 5.1435 52 1 2.6560 -11.6733 6.1738 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724381147.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:41:05 Heat of formation + Delta-G solvation = -150.018196 kcal Electronic energy + Delta-G solvation = -31211.438124 eV Core-core repulsion = 26687.689631 eV Total energy + Delta-G solvation = -4523.748492 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.16 seconds Orbital eigenvalues (eV) -49.99991 -47.95715 -40.83968 -39.00485 -38.65282 -36.41832 -35.28903 -34.36961 -32.45418 -31.99874 -30.54727 -28.47040 -27.42948 -26.97159 -25.69841 -24.08019 -23.26778 -22.59148 -21.64152 -21.41103 -20.98551 -18.99724 -18.32867 -18.03722 -17.55759 -17.16132 -17.00149 -16.84017 -16.60763 -16.37982 -16.16595 -15.88162 -15.64553 -15.37280 -15.17241 -14.89666 -14.73164 -14.50340 -14.35049 -14.27271 -13.82213 -13.62129 -13.41502 -13.25463 -13.22651 -13.15972 -13.03688 -13.00480 -12.82740 -12.59927 -12.55049 -12.29904 -12.21801 -12.16912 -12.06619 -11.90297 -11.87009 -11.63930 -11.36825 -11.34309 -10.84691 -10.56101 -10.13145 -9.31206 -8.79328 -7.89930 -5.36781 1.51309 1.54108 1.62397 1.67208 2.10105 2.50663 2.80638 3.03350 3.17228 3.24152 3.30520 3.52235 3.59021 3.82312 3.90180 3.92105 4.03525 4.10644 4.25368 4.26953 4.32869 4.44620 4.50626 4.51030 4.54244 4.57228 4.67368 4.69384 4.76266 4.76396 4.80048 4.83199 4.87131 4.89426 4.96379 5.00494 5.03160 5.10263 5.13475 5.29062 5.35842 5.37620 5.49066 5.59155 5.67387 6.09185 6.10745 6.34786 6.55063 7.09201 7.26226 7.77032 8.30045 9.18283 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.011637 B = 0.002114 C = 0.001848 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2405.501375 B =13244.911833 C =15145.879250 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.019 3.981 2 N -0.562 5.562 3 C 0.022 3.978 4 C 0.053 3.947 5 C -0.106 4.106 6 C -0.097 4.097 7 C -0.131 4.131 8 C 0.507 3.493 9 O -0.590 6.590 10 N -0.716 5.716 11 C 0.135 3.865 12 C -0.137 4.137 13 H 0.120 0.880 14 C 0.155 3.845 15 N -0.605 5.605 16 C -0.262 4.262 17 H 0.082 0.918 18 C -0.049 4.049 19 N -0.935 5.935 20 Si 0.968 3.032 21 H -0.287 1.287 22 H -0.298 1.298 23 H -0.265 1.265 24 C 0.178 3.822 25 C -0.169 4.169 26 C 0.298 3.702 27 F -0.211 7.211 28 F -0.208 7.208 29 H 0.074 0.926 30 H 0.024 0.976 31 H 0.077 0.923 32 H 0.024 0.976 33 H 0.069 0.931 34 H 0.076 0.924 35 H 0.070 0.930 36 H 0.030 0.970 37 H 0.074 0.926 38 H 0.074 0.926 39 H 0.054 0.946 40 H 0.055 0.945 41 H 0.120 0.880 42 H 0.116 0.884 43 H 0.417 0.583 44 H 0.055 0.945 45 H 0.067 0.933 46 H 0.085 0.915 47 H 0.013 0.987 48 H 0.251 0.749 49 H 0.074 0.926 50 H 0.003 0.997 51 H 0.100 0.900 52 H 0.091 0.909 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -8.335 21.265 -1.678 22.902 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.129 4.129 2 N -0.286 5.286 3 C -0.126 4.126 4 C -0.075 4.075 5 C -0.144 4.144 6 C -0.136 4.136 7 C -0.170 4.170 8 C 0.296 3.704 9 O -0.470 6.470 10 N -0.369 5.369 11 C 0.010 3.990 12 C -0.159 4.159 13 H 0.138 0.862 14 C 0.029 3.971 15 N -0.327 5.327 16 C -0.392 4.392 17 H 0.099 0.901 18 C -0.244 4.244 19 N -0.581 5.581 20 Si 0.796 3.204 21 H -0.214 1.214 22 H -0.225 1.225 23 H -0.189 1.189 24 C 0.052 3.948 25 C -0.208 4.208 26 C 0.261 3.739 27 F -0.192 7.192 28 F -0.189 7.189 29 H 0.092 0.908 30 H 0.042 0.958 31 H 0.095 0.905 32 H 0.043 0.957 33 H 0.088 0.912 34 H 0.095 0.905 35 H 0.089 0.911 36 H 0.048 0.952 37 H 0.093 0.907 38 H 0.093 0.907 39 H 0.073 0.927 40 H 0.074 0.926 41 H 0.138 0.862 42 H 0.134 0.866 43 H 0.254 0.746 44 H 0.073 0.927 45 H 0.085 0.915 46 H 0.104 0.896 47 H 0.031 0.969 48 H 0.060 0.940 49 H 0.092 0.908 50 H 0.021 0.979 51 H 0.119 0.881 52 H 0.109 0.891 Dipole moment (debyes) X Y Z Total from point charges -7.673 21.291 -1.506 22.681 hybrid contribution -0.194 -0.672 0.376 0.794 sum -7.868 20.619 -1.130 22.098 Atomic orbital electron populations 1.22496 0.86752 1.02843 1.00839 1.62017 1.08850 1.14450 1.43328 1.22420 1.00986 0.88362 1.00811 1.22146 1.00095 0.94242 0.91017 1.21518 1.01640 0.93152 0.98085 1.21211 1.01066 0.92910 0.98433 1.21714 1.04227 0.94976 0.96132 1.21486 0.78740 0.82000 0.88167 1.90685 1.43189 1.70576 1.42554 1.45928 1.57529 1.07902 1.25561 1.21029 0.98907 0.88895 0.90171 1.22769 1.04406 0.93692 0.94985 0.86183 1.20972 0.96053 0.84867 0.95247 1.44320 1.74527 1.02362 1.11536 1.19550 1.22929 0.95784 1.00901 0.90057 1.25849 0.97767 1.00022 1.00791 1.70173 1.28644 1.12130 1.47129 0.85272 0.79263 0.77267 0.78567 1.21411 1.22494 1.18900 1.20552 0.94877 0.95863 0.83550 1.23102 1.04099 0.91718 1.01921 1.21102 0.73540 0.96141 0.83112 1.92951 1.32652 1.97290 1.96336 1.92966 1.82405 1.88289 1.55202 0.90767 0.95765 0.90469 0.95692 0.91217 0.90533 0.91108 0.95217 0.90739 0.90726 0.92715 0.92606 0.86160 0.86601 0.74583 0.92664 0.91488 0.89628 0.96866 0.94019 0.90777 0.97917 0.88126 0.89093 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.02 0.22 9.40 127.69 1.20 1.42 16 2 N -0.56 -8.15 5.02 -948.89 -4.76 -12.91 16 3 C 0.02 0.27 9.57 127.69 1.22 1.49 16 4 C 0.05 0.78 4.96 86.30 0.43 1.20 16 5 C -0.11 -1.40 5.14 30.59 0.16 -1.24 16 6 C -0.10 -1.63 4.50 30.59 0.14 -1.49 16 7 C -0.13 -1.98 5.70 29.85 0.17 -1.81 16 8 C 0.51 12.36 7.83 87.66 0.69 13.05 16 9 O -0.59 -19.78 15.98 -3.03 -0.05 -19.83 16 10 N -0.72 -16.48 5.33 -463.05 -2.47 -18.95 16 11 C 0.14 3.88 4.83 86.38 0.42 4.30 16 12 C -0.14 -4.18 2.03 -10.72 -0.02 -4.20 16 13 H 0.12 3.28 8.14 -2.39 -0.02 3.26 16 14 C 0.15 5.65 5.40 86.36 0.47 6.12 16 15 N -0.61 -27.33 2.99 -699.10 -2.09 -29.42 16 16 C -0.26 -12.85 9.58 84.03 0.81 -12.04 16 17 H 0.08 3.72 7.89 -2.91 -0.02 3.69 16 18 C -0.05 -2.51 4.92 84.86 0.42 -2.09 16 19 N -0.94 -52.32 11.20 21.65 0.24 -52.08 16 20 Si 0.97 41.50 29.59 68.60 2.03 43.53 16 21 H -0.29 -12.28 7.11 99.48 0.71 -11.57 16 22 H -0.30 -13.13 7.11 99.48 0.71 -12.43 16 23 H -0.26 -10.62 7.11 99.48 0.71 -9.91 16 24 C 0.18 8.01 5.10 86.36 0.44 8.45 16 25 C -0.17 -5.94 5.62 30.67 0.17 -5.77 16 26 C 0.30 10.12 1.63 30.62 0.05 10.17 16 27 F -0.21 -8.10 15.73 44.97 0.71 -7.39 16 28 F -0.21 -6.77 16.41 44.97 0.74 -6.03 16 29 H 0.07 0.74 8.14 -2.38 -0.02 0.72 16 30 H 0.02 0.28 8.14 -2.39 -0.02 0.26 16 31 H 0.08 0.81 6.30 -2.39 -0.02 0.80 16 32 H 0.02 0.29 8.14 -2.39 -0.02 0.27 16 33 H 0.07 0.80 8.12 -2.39 -0.02 0.78 16 34 H 0.08 0.76 8.14 -2.39 -0.02 0.74 16 35 H 0.07 1.09 8.06 -2.39 -0.02 1.07 16 36 H 0.03 0.46 8.12 -2.38 -0.02 0.44 16 37 H 0.07 0.84 6.47 -2.39 -0.02 0.82 16 38 H 0.07 1.00 8.14 -2.39 -0.02 0.98 16 39 H 0.05 1.10 8.10 -2.38 -0.02 1.08 16 40 H 0.06 1.07 8.10 -2.39 -0.02 1.05 16 41 H 0.12 1.22 8.14 -2.39 -0.02 1.20 16 42 H 0.12 1.36 8.14 -2.39 -0.02 1.34 16 43 H 0.42 7.43 7.70 -92.71 -0.71 6.72 16 44 H 0.05 1.81 7.97 -2.39 -0.02 1.80 16 45 H 0.07 2.01 7.63 -2.39 -0.02 1.99 16 46 H 0.09 2.76 7.13 -2.39 -0.02 2.74 16 47 H 0.01 0.54 7.92 -2.39 -0.02 0.52 16 48 H 0.25 13.70 8.31 -92.71 -0.77 12.93 16 49 H 0.07 3.74 6.06 -2.39 -0.01 3.72 16 50 H 0.00 0.13 7.92 -2.39 -0.02 0.12 16 51 H 0.10 3.28 8.14 -2.39 -0.02 3.26 16 52 H 0.09 2.92 8.14 -2.39 -0.02 2.90 16 Total: -1.00 -65.53 413.00 1.28 -64.25 By element: Atomic # 1 Polarization: 21.11 SS G_CDS: 0.19 Total: 21.29 kcal Atomic # 6 Polarization: 10.79 SS G_CDS: 6.75 Total: 17.54 kcal Atomic # 7 Polarization: -104.28 SS G_CDS: -9.08 Total: -113.36 kcal Atomic # 8 Polarization: -19.78 SS G_CDS: -0.05 Total: -19.83 kcal Atomic # 9 Polarization: -14.87 SS G_CDS: 1.44 Total: -13.42 kcal Atomic # 14 Polarization: 41.50 SS G_CDS: 2.03 Total: 43.53 kcal Total: -65.53 1.28 -64.25 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724381147.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -85.766 kcal (2) G-P(sol) polarization free energy of solvation -65.534 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -151.300 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.282 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -64.253 kcal (6) G-S(sol) free energy of system = (1) + (5) -150.018 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.16 seconds