Wall clock time and date at job start Wed Apr 1 2020 06:03:52 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31617 * 1 3 3 Si 1.86799 * 119.99840 * 2 1 4 4 H 1.48501 * 109.47250 * 179.97438 * 3 2 1 5 5 H 1.48506 * 109.47303 * 299.99776 * 3 2 1 6 6 H 1.48503 * 109.47236 * 59.99888 * 3 2 1 7 7 C 1.38812 * 120.00261 * 179.97438 * 2 1 3 8 8 H 1.07997 * 120.00295 * 179.97438 * 7 2 1 9 9 N 1.36942 * 119.99699 * 0.02562 * 7 2 1 10 10 C 1.46497 * 119.99487 * 179.97438 * 9 7 2 11 11 C 1.53125 * 109.52002 * 155.00070 * 10 9 7 12 12 C 1.53034 * 109.27929 * 177.55828 * 11 10 9 13 13 N 1.46846 * 109.52453 * 300.81980 * 12 11 10 14 14 C 1.46898 * 110.99661 * 185.83780 * 13 12 11 15 15 C 1.53004 * 109.46947 * 170.00175 * 14 13 12 16 16 N 1.46499 * 109.47198 * 180.02562 * 15 14 13 17 17 C 1.34777 * 119.99665 * 180.27868 * 16 15 14 18 18 O 1.21283 * 119.99990 * 359.71991 * 17 16 15 19 19 C 1.50698 * 119.99538 * 179.72653 * 17 16 15 20 20 H 1.09003 * 115.50829 * 325.34939 * 19 17 16 21 21 C 1.52993 * 117.43124 * 110.61792 * 19 17 16 22 22 H 1.08998 * 119.98718 * 355.25067 * 21 19 17 23 23 C 1.53005 * 117.43028 * 179.97438 * 19 17 16 24 24 H 1.09008 * 119.98336 * 4.73769 * 23 19 17 25 25 C 1.55919 * 117.17542 * 159.54187 * 23 19 17 26 26 H 1.08995 * 115.92187 * 263.04934 * 25 23 19 27 27 C 1.55927 * 104.49597 * 133.36189 * 25 23 19 28 28 C 1.54577 * 104.64356 * 289.72398 * 27 25 23 29 29 C 1.55930 * 104.64434 * 359.97438 * 28 27 25 30 30 H 1.08997 * 115.91931 * 199.96777 * 29 28 27 31 31 C 1.56945 * 100.65263 * 29.30661 * 25 23 19 32 32 C 1.46854 * 111.19310 * 61.74350 * 13 12 11 33 33 C 1.53030 * 109.52157 * 298.25355 * 32 13 12 34 34 H 0.97005 * 120.00133 * 0.02562 * 1 2 3 35 35 H 0.97001 * 119.99992 * 0.02562 * 9 7 2 36 36 H 1.09002 * 109.52273 * 34.87890 * 10 9 7 37 37 H 1.09003 * 109.50381 * 57.61771 * 11 10 9 38 38 H 1.09008 * 109.53184 * 297.52250 * 11 10 9 39 39 H 1.09001 * 109.46363 * 180.80146 * 12 11 10 40 40 H 1.09000 * 109.45235 * 60.83210 * 12 11 10 41 41 H 1.08995 * 109.47478 * 50.00657 * 14 13 12 42 42 H 1.09006 * 109.47065 * 290.00054 * 14 13 12 43 43 H 1.09009 * 109.46730 * 59.99875 * 15 14 13 44 44 H 1.08998 * 109.46846 * 300.00419 * 15 14 13 45 45 H 0.97001 * 119.99790 * 359.97438 * 16 15 14 46 46 H 1.09005 * 110.40345 * 48.51582 * 27 25 23 47 47 H 1.09004 * 110.40618 * 170.93015 * 27 25 23 48 48 H 1.08997 * 110.40531 * 241.20001 * 28 27 25 49 49 H 1.09008 * 110.39892 * 118.78947 * 28 27 25 50 50 H 1.09002 * 112.03154 * 170.30289 * 31 25 23 51 51 H 1.08999 * 112.02808 * 296.74872 * 31 25 23 52 52 H 1.09000 * 109.46295 * 58.27499 * 32 13 12 53 53 H 1.08997 * 109.45564 * 178.24109 * 32 13 12 54 54 H 1.09000 * 109.50717 * 299.23916 * 33 32 13 55 55 H 1.09001 * 109.50096 * 179.12412 * 33 32 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3162 0.0000 0.0000 3 14 2.2501 1.6177 0.0000 4 1 3.7101 1.3465 0.0006 5 1 1.8914 2.3965 -1.2126 6 1 1.8913 2.3965 1.2125 7 6 2.0103 -1.2021 0.0005 8 1 3.0902 -1.2021 0.0001 9 7 1.3256 -2.3881 0.0005 10 6 2.0582 -3.6567 0.0005 11 6 1.1813 -4.7539 0.6105 12 6 1.9281 -6.0883 0.5522 13 7 2.2471 -6.4116 -0.8443 14 6 2.8413 -7.7507 -0.9521 15 6 2.9294 -8.1525 -2.4258 16 7 3.5214 -9.4882 -2.5333 17 6 3.7034 -10.0490 -3.7453 18 8 3.3723 -9.4500 -4.7465 19 6 4.3180 -11.4205 -3.8561 20 1 5.0826 -11.6535 -3.1150 21 6 3.4115 -12.5641 -4.3154 22 1 2.3477 -12.3863 -4.4732 23 6 4.4969 -12.0013 -5.2603 24 1 4.2562 -11.3965 -6.1347 25 6 5.5395 -13.1483 -5.4290 26 1 6.5265 -12.8473 -5.7799 27 6 4.7986 -14.2277 -6.2759 28 6 3.7302 -14.8079 -5.3213 29 6 3.9266 -14.0249 -3.9872 30 1 3.5165 -14.4955 -3.0937 31 6 5.4803 -13.8059 -4.0052 32 6 3.1272 -5.3961 -1.4366 33 6 2.4160 -4.0410 -1.4377 34 1 -0.4850 0.8401 -0.0004 35 1 0.3556 -2.3881 -0.0002 36 1 2.9702 -3.5507 0.5880 37 1 0.2516 -4.8322 0.0467 38 1 0.9578 -4.5069 1.6484 39 1 1.3008 -6.8743 0.9727 40 1 2.8509 -6.0134 1.1275 41 1 2.2198 -8.4682 -0.4165 42 1 3.8411 -7.7406 -0.5178 43 1 3.5510 -7.4349 -2.9615 44 1 1.9297 -8.1625 -2.8600 45 1 3.7865 -9.9671 -1.7325 46 1 4.3241 -13.7700 -7.1440 47 1 5.4927 -15.0079 -6.5886 48 1 3.8989 -15.8733 -5.1646 49 1 2.7304 -14.6353 -5.7200 50 1 6.0261 -14.7486 -3.9671 51 1 5.8066 -13.1194 -3.2239 52 1 4.0443 -5.3246 -0.8519 53 1 3.3706 -5.6793 -2.4606 54 1 1.5059 -4.1081 -2.0338 55 1 3.0754 -3.2845 -1.8632 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724632545.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:03:52 Heat of formation + Delta-G solvation = -7.592144 kcal Electronic energy + Delta-G solvation = -29950.764446 eV Core-core repulsion = 25987.421541 eV Total energy + Delta-G solvation = -3963.342906 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.27 seconds Orbital eigenvalues (eV) -42.26333 -40.47659 -39.89748 -37.11072 -35.77100 -34.53825 -33.97565 -31.84291 -31.53103 -29.77964 -29.35070 -28.82083 -26.34536 -25.28898 -24.37345 -23.41752 -22.56592 -22.32549 -21.72413 -20.76468 -20.03869 -19.55585 -19.10035 -18.56365 -17.48375 -16.89098 -16.82320 -16.71718 -16.35228 -16.23064 -15.82948 -15.45380 -15.37787 -15.26088 -15.02600 -14.46202 -14.26561 -14.01810 -13.93687 -13.79655 -13.23771 -13.11956 -13.02798 -12.90680 -12.77562 -12.45982 -12.44332 -12.39439 -12.22997 -12.16579 -12.13514 -12.05833 -12.00667 -11.82199 -11.75782 -11.54307 -11.23017 -11.18977 -10.99472 -10.86956 -10.74903 -10.59681 -10.13757 -9.28385 -9.00160 -7.94727 -5.23081 1.40199 1.45591 1.46555 1.56353 1.95558 2.55227 2.77187 2.99410 3.38060 3.38402 3.53330 3.58402 3.78184 3.81810 3.94516 3.95917 3.99764 4.04301 4.09638 4.12872 4.19823 4.28779 4.33618 4.36271 4.44947 4.47566 4.49371 4.55222 4.58142 4.69092 4.69686 4.74482 4.83109 4.88277 4.91850 4.95831 4.99928 5.04976 5.07517 5.11846 5.19421 5.20828 5.23563 5.24317 5.25956 5.36025 5.39791 5.43255 5.49258 5.50715 5.60008 6.10276 6.15843 6.28064 6.51028 7.20781 7.33284 8.10537 8.33682 9.29117 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.030580 B = 0.001464 C = 0.001434 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 915.407070 B =19119.451723 C =19519.653626 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.970 5.970 2 C -0.077 4.077 3 Si 0.971 3.029 4 H -0.266 1.266 5 H -0.295 1.295 6 H -0.292 1.292 7 C -0.238 4.238 8 H 0.074 0.926 9 N -0.738 5.738 10 C 0.171 3.829 11 C -0.114 4.114 12 C 0.073 3.927 13 N -0.547 5.547 14 C 0.056 3.944 15 C 0.126 3.874 16 N -0.708 5.708 17 C 0.536 3.464 18 O -0.591 6.591 19 C -0.164 4.164 20 H 0.154 0.846 21 C -0.130 4.130 22 H 0.105 0.895 23 C -0.143 4.143 24 H 0.092 0.908 25 C -0.073 4.073 26 H 0.107 0.893 27 C -0.119 4.119 28 C -0.120 4.120 29 C -0.063 4.063 30 H 0.119 0.881 31 C -0.132 4.132 32 C 0.066 3.934 33 C -0.124 4.124 34 H 0.250 0.750 35 H 0.371 0.629 36 H 0.038 0.962 37 H 0.056 0.944 38 H 0.065 0.935 39 H 0.098 0.902 40 H 0.043 0.957 41 H 0.102 0.898 42 H 0.056 0.944 43 H 0.052 0.948 44 H 0.056 0.944 45 H 0.419 0.581 46 H 0.054 0.946 47 H 0.079 0.921 48 H 0.082 0.918 49 H 0.058 0.942 50 H 0.090 0.910 51 H 0.083 0.917 52 H 0.039 0.961 53 H 0.075 0.925 54 H 0.045 0.955 55 H 0.044 0.956 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 12.820 -37.265 -4.477 39.662 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.621 5.621 2 C -0.269 4.269 3 Si 0.801 3.199 4 H -0.191 1.191 5 H -0.222 1.222 6 H -0.219 1.219 7 C -0.370 4.370 8 H 0.092 0.908 9 N -0.377 5.377 10 C 0.063 3.937 11 C -0.153 4.153 12 C -0.055 4.055 13 N -0.273 5.273 14 C -0.072 4.072 15 C 0.002 3.998 16 N -0.361 5.361 17 C 0.324 3.676 18 O -0.471 6.471 19 C -0.185 4.185 20 H 0.171 0.829 21 C -0.148 4.148 22 H 0.123 0.877 23 C -0.162 4.162 24 H 0.111 0.889 25 C -0.091 4.091 26 H 0.125 0.875 27 C -0.157 4.157 28 C -0.158 4.158 29 C -0.081 4.081 30 H 0.137 0.863 31 C -0.169 4.169 32 C -0.062 4.062 33 C -0.164 4.164 34 H 0.059 0.941 35 H 0.203 0.797 36 H 0.056 0.944 37 H 0.075 0.925 38 H 0.084 0.916 39 H 0.116 0.884 40 H 0.061 0.939 41 H 0.120 0.880 42 H 0.074 0.926 43 H 0.070 0.930 44 H 0.074 0.926 45 H 0.256 0.744 46 H 0.072 0.928 47 H 0.098 0.902 48 H 0.100 0.900 49 H 0.077 0.923 50 H 0.109 0.891 51 H 0.101 0.899 52 H 0.058 0.942 53 H 0.093 0.907 54 H 0.064 0.936 55 H 0.063 0.937 Dipole moment (debyes) X Y Z Total from point charges 12.289 -36.708 -5.421 39.088 hybrid contribution 0.299 1.801 0.270 1.845 sum 12.588 -34.907 -5.151 37.463 Atomic orbital electron populations 1.69830 1.06614 1.25870 1.59829 1.25545 0.96363 1.01026 1.04000 0.85101 0.78233 0.79979 0.76630 1.19068 1.22249 1.21932 1.19658 0.91337 0.85364 1.40607 0.90835 1.42661 1.05410 1.01058 1.88606 1.20491 0.94176 0.85200 0.93816 1.21756 0.98878 0.94104 1.00519 1.21986 0.99296 0.96716 0.87462 1.61735 1.45062 1.01768 1.18725 1.22157 0.99673 0.90732 0.94660 1.21176 0.98073 0.83214 0.97353 1.45673 1.63215 1.18466 1.08715 1.20205 0.77314 0.87308 0.82745 1.90708 1.52843 1.65443 1.38111 1.22357 1.04423 0.90144 1.01575 0.82911 1.24182 0.95525 0.92363 1.02774 0.87685 1.23578 1.00858 0.99681 0.92050 0.88933 1.23240 0.96679 0.92164 0.97001 0.87484 1.22547 0.97854 0.97612 0.97655 1.22569 0.98751 0.99857 0.94582 1.23670 0.95319 0.90841 0.98306 0.86295 1.23764 0.95505 1.01521 0.96128 1.22034 0.93527 0.91022 0.99612 1.22104 0.99619 0.95383 0.99319 0.94107 0.79702 0.94428 0.92538 0.91590 0.88368 0.93894 0.87966 0.92619 0.92976 0.92594 0.74385 0.92752 0.90223 0.89986 0.92346 0.89115 0.89857 0.94238 0.90690 0.93648 0.93697 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.97 -60.77 13.06 21.65 0.28 -60.49 16 2 C -0.08 -4.54 5.50 84.86 0.47 -4.07 16 3 Si 0.97 47.12 29.55 68.60 2.03 49.14 16 4 H -0.27 -12.12 7.11 99.48 0.71 -11.41 16 5 H -0.30 -14.38 7.11 99.48 0.71 -13.67 16 6 H -0.29 -14.08 7.11 99.48 0.71 -13.37 16 7 C -0.24 -13.51 9.93 84.03 0.83 -12.68 16 8 H 0.07 4.03 7.83 -2.91 -0.02 4.01 16 9 N -0.74 -38.38 5.12 -322.56 -1.65 -40.03 16 10 C 0.17 6.91 2.84 45.07 0.13 7.04 16 11 C -0.11 -3.72 5.57 30.65 0.17 -3.55 16 12 C 0.07 1.74 5.46 86.32 0.47 2.21 16 13 N -0.55 -13.34 4.66 -896.36 -4.17 -17.52 16 14 C 0.06 0.94 5.07 86.30 0.44 1.38 16 15 C 0.13 2.59 5.60 86.38 0.48 3.07 16 16 N -0.71 -11.30 5.56 -463.05 -2.57 -13.87 16 17 C 0.54 11.43 7.61 87.66 0.67 12.10 16 18 O -0.59 -18.88 16.35 -3.04 -0.05 -18.93 16 19 C -0.16 -2.30 5.39 -11.54 -0.06 -2.36 16 20 H 0.15 1.24 5.96 -2.39 -0.01 1.22 16 21 C -0.13 -1.69 6.39 -8.37 -0.05 -1.74 16 22 H 0.11 1.67 8.14 -2.39 -0.02 1.65 16 23 C -0.14 -2.22 5.87 -9.26 -0.05 -2.28 16 24 H 0.09 2.00 7.82 -2.38 -0.02 1.98 16 25 C -0.07 -0.72 5.18 -7.39 -0.04 -0.76 16 26 H 0.11 0.94 8.14 -2.39 -0.02 0.92 16 27 C -0.12 -1.08 6.21 32.14 0.20 -0.88 16 28 C -0.12 -0.95 6.20 32.15 0.20 -0.75 16 29 C -0.06 -0.47 5.22 -6.50 -0.03 -0.50 16 30 H 0.12 0.54 8.14 -2.39 -0.02 0.52 16 31 C -0.13 -0.82 6.23 33.35 0.21 -0.61 16 32 C 0.07 1.87 5.29 86.32 0.46 2.33 16 33 C -0.12 -4.62 5.68 30.64 0.17 -4.45 16 34 H 0.25 15.15 8.31 -92.70 -0.77 14.38 16 35 H 0.37 20.84 7.80 -92.71 -0.72 20.11 16 36 H 0.04 1.54 8.08 -2.39 -0.02 1.52 16 37 H 0.06 1.98 8.14 -2.39 -0.02 1.96 16 38 H 0.07 2.15 8.14 -2.38 -0.02 2.13 16 39 H 0.10 1.85 8.02 -2.39 -0.02 1.83 16 40 H 0.04 0.95 8.14 -2.39 -0.02 0.93 16 41 H 0.10 1.30 7.99 -2.39 -0.02 1.29 16 42 H 0.06 0.79 8.12 -2.38 -0.02 0.77 16 43 H 0.05 1.28 6.43 -2.38 -0.02 1.26 16 44 H 0.06 1.41 8.14 -2.39 -0.02 1.39 16 45 H 0.42 3.45 8.47 -92.71 -0.79 2.66 16 46 H 0.05 0.63 8.04 -2.38 -0.02 0.61 16 47 H 0.08 0.52 8.14 -2.39 -0.02 0.50 16 48 H 0.08 0.43 8.14 -2.39 -0.02 0.41 16 49 H 0.06 0.57 8.04 -2.38 -0.02 0.55 16 50 H 0.09 0.36 8.14 -2.39 -0.02 0.34 16 51 H 0.08 0.41 5.91 -2.39 -0.01 0.40 16 52 H 0.04 1.04 8.14 -2.39 -0.02 1.02 16 53 H 0.07 2.04 6.21 -2.39 -0.01 2.03 16 54 H 0.04 1.85 8.14 -2.39 -0.02 1.83 16 55 H 0.04 1.81 8.14 -2.39 -0.02 1.79 16 Total: -1.00 -74.49 419.74 -2.11 -76.60 By element: Atomic # 1 Polarization: 32.23 SS G_CDS: -0.63 Total: 31.60 kcal Atomic # 6 Polarization: -11.16 SS G_CDS: 4.66 Total: -6.50 kcal Atomic # 7 Polarization: -123.79 SS G_CDS: -8.12 Total: -131.91 kcal Atomic # 8 Polarization: -18.88 SS G_CDS: -0.05 Total: -18.93 kcal Atomic # 14 Polarization: 47.12 SS G_CDS: 2.03 Total: 49.14 kcal Total: -74.49 -2.11 -76.60 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724632545.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 69.004 kcal (2) G-P(sol) polarization free energy of solvation -74.485 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -5.481 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -2.111 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.596 kcal (6) G-S(sol) free energy of system = (1) + (5) -7.592 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.27 seconds