Wall clock time and date at job start Wed Apr 1 2020 06:28:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31614 * 1 3 3 Si 1.86796 * 120.00481 * 2 1 4 4 H 1.48502 * 109.47107 * 272.94335 * 3 2 1 5 5 H 1.48502 * 109.47242 * 32.94024 * 3 2 1 6 6 H 1.48501 * 109.47554 * 152.93841 * 3 2 1 7 7 C 1.38814 * 120.00082 * 179.97438 * 2 1 3 8 8 H 1.08006 * 119.99515 * 339.35004 * 7 2 1 9 9 N 1.36938 * 120.00388 * 159.34708 * 7 2 1 10 10 C 1.46926 * 120.62822 * 332.62750 * 9 7 2 11 11 C 1.53194 * 108.77898 * 233.58852 * 10 9 7 12 12 C 1.53045 * 109.30844 * 305.36910 * 11 10 9 13 13 C 1.53002 * 109.45300 * 181.38520 * 12 11 10 14 14 C 1.53007 * 109.46545 * 174.97230 * 13 12 11 15 15 C 1.53008 * 109.46968 * 179.97438 * 14 13 12 16 16 C 1.52999 * 109.47183 * 179.97438 * 15 14 13 17 17 C 1.52999 * 109.47115 * 180.02562 * 16 15 14 18 18 N 1.46489 * 109.47033 * 180.02562 * 17 16 15 19 19 C 1.34782 * 120.00036 * 180.02562 * 18 17 16 20 20 O 1.21282 * 119.99972 * 359.97438 * 19 18 17 21 21 C 1.50703 * 120.00033 * 179.97438 * 19 18 17 22 22 C 1.50698 * 109.46951 * 179.97438 * 21 19 18 23 23 C 1.34861 * 125.88748 * 84.99990 * 22 21 19 24 24 C 1.40892 * 107.41548 * 180.02562 * 23 22 21 25 25 C 1.34850 * 107.41852 * 0.02562 * 24 23 22 26 26 N 1.36341 * 108.21899 * 0.26093 * 25 24 23 27 27 H 0.97005 * 125.64165 * 179.73183 * 26 25 24 28 28 C 1.53037 * 109.52704 * 61.37252 * 12 11 10 29 29 C 1.46919 * 120.62992 * 152.61195 * 9 7 2 30 30 H 0.97003 * 119.99716 * 0.02562 * 1 2 3 31 31 H 1.09003 * 109.58429 * 113.79963 * 10 9 7 32 32 H 1.09001 * 109.70290 * 353.45116 * 10 9 7 33 33 H 1.08992 * 109.49464 * 185.41561 * 11 10 9 34 34 H 1.09001 * 109.49162 * 65.31694 * 11 10 9 35 35 H 1.09000 * 109.45977 * 301.35269 * 12 11 10 36 36 H 1.09001 * 109.47277 * 54.97332 * 13 12 11 37 37 H 1.09001 * 109.47312 * 294.96721 * 13 12 11 38 38 H 1.09001 * 109.47250 * 60.00085 * 14 13 12 39 39 H 1.08996 * 109.47264 * 299.99490 * 14 13 12 40 40 H 1.09001 * 109.46873 * 60.00090 * 15 14 13 41 41 H 1.09000 * 109.46983 * 300.00449 * 15 14 13 42 42 H 1.09000 * 109.46857 * 59.99795 * 16 15 14 43 43 H 1.09001 * 109.46845 * 300.00078 * 16 15 14 44 44 H 1.09001 * 109.47047 * 60.00090 * 17 16 15 45 45 H 1.09000 * 109.46877 * 300.00408 * 17 16 15 46 46 H 0.97002 * 120.00741 * 359.97438 * 18 17 16 47 47 H 1.09001 * 109.47147 * 60.00058 * 21 19 18 48 48 H 1.08996 * 109.47237 * 299.99542 * 21 19 18 49 49 H 1.07998 * 126.28842 * 0.04099 * 23 22 21 50 50 H 1.07994 * 126.29118 * 179.97438 * 24 23 22 51 51 H 1.07997 * 125.89212 * 180.02562 * 25 24 23 52 52 H 1.08999 * 109.50019 * 58.58113 * 28 12 11 53 53 H 1.09007 * 109.49332 * 178.67187 * 28 12 11 54 54 H 1.09001 * 109.58319 * 246.19626 * 29 9 7 55 55 H 1.08995 * 109.59148 * 6.48500 * 29 9 7 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3161 0.0000 0.0000 3 14 2.2503 1.6176 0.0000 4 1 2.4355 2.0822 -1.3982 5 1 1.4803 2.6339 0.7613 6 1 3.5775 1.4229 0.6369 7 6 2.0102 -1.2022 0.0005 8 1 1.5222 -2.1073 0.3308 9 7 3.3136 -1.2405 -0.4177 10 6 3.8173 -0.2597 -1.3887 11 6 4.4622 -1.0100 -2.5583 12 6 5.5289 -1.9661 -2.0196 13 6 6.1992 -2.6921 -3.1878 14 6 7.3488 -3.5533 -2.6607 15 6 8.0188 -4.2799 -3.8288 16 6 9.1688 -5.1406 -3.3019 17 6 9.8391 -5.8667 -4.4699 18 7 10.9397 -6.6912 -3.9654 19 6 11.6788 -7.4253 -4.8206 20 8 11.4322 -7.4037 -6.0079 21 6 12.8114 -8.2732 -4.3016 22 6 13.4716 -8.9884 -5.4521 23 6 14.4413 -8.4861 -6.2434 24 6 14.7716 -9.4786 -7.1873 25 6 13.9908 -10.5493 -6.9372 26 7 13.1865 -10.2521 -5.8772 27 1 12.5231 -10.8430 -5.4879 28 6 4.8748 -2.9909 -1.0901 29 6 4.2349 -2.2631 0.0963 30 1 -0.4850 0.8401 -0.0004 31 1 4.5598 0.3795 -0.9108 32 1 2.9923 0.3505 -1.7564 33 1 4.9247 -0.2949 -3.2385 34 1 3.6995 -1.5784 -3.0906 35 1 6.2780 -1.3998 -1.4661 36 1 6.5884 -1.9600 -3.8953 37 1 5.4686 -3.3280 -3.6878 38 1 6.9596 -4.2854 -1.9531 39 1 8.0795 -2.9176 -2.1608 40 1 8.4080 -3.5481 -4.5366 41 1 7.2879 -4.9157 -4.3284 42 1 8.7800 -5.8724 -2.5937 43 1 9.8995 -4.5044 -2.8025 44 1 10.2279 -5.1346 -5.1777 45 1 9.1085 -6.5027 -4.9697 46 1 11.1372 -6.7083 -3.0158 47 1 12.4225 -9.0055 -3.5941 48 1 13.5418 -7.6371 -3.8016 49 1 14.8835 -7.5037 -6.1673 50 1 15.5131 -9.3966 -7.9681 51 1 13.9984 -11.4801 -7.4848 52 1 4.1083 -3.5406 -1.6365 53 1 5.6312 -3.6860 -0.7253 54 1 5.0114 -1.7873 0.6953 55 1 3.6843 -2.9754 0.7107 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001724895121.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:28:26 Heat of formation + Delta-G solvation = -24.810201 kcal Electronic energy + Delta-G solvation = -28906.941449 eV Core-core repulsion = 24942.851912 eV Total energy + Delta-G solvation = -3964.089536 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.34 seconds Orbital eigenvalues (eV) -42.04205 -40.45476 -39.78330 -37.45367 -36.10467 -34.60025 -33.40599 -32.77036 -31.88127 -31.79164 -30.74913 -28.22418 -27.09359 -25.49868 -24.50432 -23.33715 -22.26077 -22.00190 -21.56157 -21.36587 -20.92420 -20.65918 -18.75379 -18.53790 -17.96410 -17.21459 -16.99997 -16.68215 -16.22957 -15.91579 -15.39373 -15.27493 -15.23469 -15.14028 -14.83153 -14.60451 -14.43936 -14.28919 -14.21381 -14.16064 -13.75811 -13.59315 -13.47382 -13.29581 -13.12353 -12.93742 -12.75492 -12.56961 -12.48522 -12.27099 -12.16864 -12.01145 -11.90369 -11.81247 -11.57279 -11.39411 -11.32048 -11.09853 -10.93661 -10.91293 -10.56851 -10.08369 -9.71869 -8.92228 -8.90614 -8.17665 -5.48091 1.28560 1.29378 1.39239 1.49053 1.65251 2.04477 2.37092 2.41039 2.57973 3.05754 3.38804 3.73836 3.75221 3.96390 3.97276 4.06670 4.08878 4.18151 4.25104 4.28607 4.41196 4.42835 4.46638 4.53715 4.56796 4.60275 4.66778 4.69980 4.72353 4.74729 4.82789 4.86884 4.94438 4.98689 5.00331 5.04245 5.06021 5.13757 5.26373 5.28918 5.32616 5.35256 5.36045 5.40936 5.42426 5.49283 5.53247 5.61700 5.71649 5.87624 6.08946 6.12128 6.23070 6.58323 6.82188 6.93465 7.29804 7.64147 8.05096 9.02616 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.042957 B = 0.001192 C = 0.001184 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 651.656934 B =23477.574937 C =23649.623095 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.959 5.959 2 C -0.036 4.036 3 Si 0.949 3.051 4 H -0.276 1.276 5 H -0.310 1.310 6 H -0.262 1.262 7 C -0.250 4.250 8 H 0.049 0.951 9 N -0.622 5.622 10 C 0.119 3.881 11 C -0.124 4.124 12 C -0.075 4.075 13 C -0.107 4.107 14 C -0.112 4.112 15 C -0.115 4.115 16 C -0.118 4.118 17 C 0.120 3.880 18 N -0.718 5.718 19 C 0.506 3.494 20 O -0.583 6.583 21 C -0.064 4.064 22 C 0.020 3.980 23 C -0.213 4.213 24 C -0.230 4.230 25 C -0.013 4.013 26 N -0.550 5.550 27 H 0.424 0.576 28 C -0.118 4.118 29 C 0.139 3.861 30 H 0.261 0.739 31 H 0.031 0.969 32 H 0.043 0.957 33 H 0.075 0.925 34 H 0.046 0.954 35 H 0.071 0.929 36 H 0.065 0.935 37 H 0.053 0.947 38 H 0.067 0.933 39 H 0.068 0.932 40 H 0.062 0.938 41 H 0.058 0.942 42 H 0.080 0.920 43 H 0.082 0.918 44 H 0.052 0.948 45 H 0.051 0.949 46 H 0.419 0.581 47 H 0.131 0.869 48 H 0.140 0.860 49 H 0.130 0.870 50 H 0.139 0.861 51 H 0.190 0.810 52 H 0.044 0.956 53 H 0.089 0.911 54 H 0.033 0.967 55 H 0.049 0.951 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 32.747 -19.686 -8.537 39.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.606 5.606 2 C -0.231 4.231 3 Si 0.778 3.222 4 H -0.203 1.203 5 H -0.239 1.239 6 H -0.186 1.186 7 C -0.380 4.380 8 H 0.067 0.933 9 N -0.347 5.347 10 C -0.006 4.006 11 C -0.163 4.163 12 C -0.094 4.094 13 C -0.145 4.145 14 C -0.150 4.150 15 C -0.153 4.153 16 C -0.156 4.156 17 C -0.004 4.004 18 N -0.371 5.371 19 C 0.293 3.707 20 O -0.463 6.463 21 C -0.104 4.104 22 C -0.094 4.094 23 C -0.238 4.238 24 C -0.255 4.255 25 C -0.144 4.144 26 N -0.146 5.146 27 H 0.262 0.738 28 C -0.156 4.156 29 C 0.015 3.985 30 H 0.070 0.930 31 H 0.049 0.951 32 H 0.061 0.939 33 H 0.094 0.906 34 H 0.065 0.935 35 H 0.089 0.911 36 H 0.083 0.917 37 H 0.072 0.928 38 H 0.086 0.914 39 H 0.087 0.913 40 H 0.081 0.919 41 H 0.077 0.923 42 H 0.098 0.902 43 H 0.100 0.900 44 H 0.071 0.929 45 H 0.069 0.931 46 H 0.256 0.744 47 H 0.149 0.851 48 H 0.158 0.842 49 H 0.148 0.852 50 H 0.157 0.843 51 H 0.207 0.793 52 H 0.063 0.937 53 H 0.108 0.892 54 H 0.051 0.949 55 H 0.068 0.932 Dipole moment (debyes) X Y Z Total from point charges 32.330 -19.694 -9.289 38.979 hybrid contribution -0.803 0.861 0.396 1.242 sum 31.527 -18.833 -8.893 37.785 Atomic orbital electron populations 1.69974 1.07449 1.27182 1.55953 1.25905 0.95827 1.00988 1.00352 0.85867 0.78697 0.80162 0.77456 1.20279 1.23870 1.18615 1.18913 0.87083 0.93497 1.38515 0.93278 1.44514 1.07768 1.34911 1.47553 1.21388 0.96455 0.92046 0.90703 1.21985 0.98261 0.98940 0.97072 1.21026 0.95981 0.95787 0.96562 1.21577 0.97440 0.98674 0.96785 1.21569 0.96829 0.98739 0.97846 1.21473 0.97040 0.98654 0.98145 1.21707 0.97872 0.99225 0.96802 1.21308 0.88331 0.93464 0.97274 1.45931 1.33160 1.46339 1.11698 1.21165 0.83458 0.80038 0.86056 1.90744 1.70825 1.66254 1.18429 1.20214 0.95877 0.99050 0.95279 1.19870 1.01172 0.86981 1.01351 1.20891 1.02790 1.00460 0.99615 1.21168 1.05504 0.95123 1.03703 1.22257 0.96591 1.01848 0.93738 1.41966 1.32217 1.13500 1.26898 0.73810 1.21975 0.99334 0.97723 0.96593 1.21161 0.91824 0.90429 0.95104 0.92994 0.95120 0.93911 0.90624 0.93469 0.91078 0.91665 0.92844 0.91409 0.91282 0.91902 0.92307 0.90176 0.89969 0.92939 0.93090 0.74406 0.85068 0.84203 0.85208 0.84285 0.79317 0.93739 0.89238 0.94859 0.93217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.96 -61.49 13.97 21.65 0.30 -61.19 16 2 C -0.04 -2.16 5.23 84.86 0.44 -1.72 16 3 Si 0.95 47.55 24.35 68.60 1.67 49.22 16 4 H -0.28 -13.10 6.62 99.48 0.66 -12.44 16 5 H -0.31 -15.68 7.11 99.48 0.71 -14.97 16 6 H -0.26 -12.52 6.64 99.48 0.66 -11.86 16 7 C -0.25 -14.58 10.03 84.03 0.84 -13.74 16 8 H 0.05 3.12 8.06 -2.91 -0.02 3.10 16 9 N -0.62 -29.79 2.77 -699.09 -1.94 -31.72 16 10 C 0.12 5.09 4.20 86.36 0.36 5.45 16 11 C -0.12 -4.12 5.36 30.67 0.16 -3.96 16 12 C -0.08 -2.00 2.15 -10.77 -0.02 -2.02 16 13 C -0.11 -2.17 4.68 30.60 0.14 -2.02 16 14 C -0.11 -1.67 4.97 30.60 0.15 -1.52 16 15 C -0.11 -1.45 5.21 30.60 0.16 -1.29 16 16 C -0.12 -1.06 5.33 30.59 0.16 -0.89 16 17 C 0.12 1.53 5.67 86.38 0.49 2.02 16 18 N -0.72 -6.80 5.56 -463.07 -2.57 -9.37 16 19 C 0.51 7.43 7.82 87.66 0.69 8.12 16 20 O -0.58 -15.19 16.03 -3.04 -0.05 -15.24 16 21 C -0.06 -0.48 6.24 29.10 0.18 -0.30 16 22 C 0.02 0.29 5.66 41.08 0.23 0.52 16 23 C -0.21 -3.87 10.77 22.14 0.24 -3.63 16 24 C -0.23 -3.92 10.86 22.14 0.24 -3.68 16 25 C -0.01 -0.17 11.94 83.21 0.99 0.83 16 26 N -0.55 -6.58 6.07 -182.76 -1.11 -7.69 16 27 H 0.42 2.57 8.96 -92.70 -0.83 1.74 16 28 C -0.12 -3.44 5.14 30.67 0.16 -3.28 16 29 C 0.14 5.30 6.52 86.36 0.56 5.86 16 30 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 31 H 0.03 1.27 7.08 -2.39 -0.02 1.25 16 32 H 0.04 2.05 4.50 -2.39 -0.01 2.04 16 33 H 0.08 2.15 8.14 -2.39 -0.02 2.13 16 34 H 0.05 1.71 8.14 -2.39 -0.02 1.69 16 35 H 0.07 1.81 8.14 -2.39 -0.02 1.79 16 36 H 0.06 1.24 8.14 -2.39 -0.02 1.22 16 37 H 0.05 1.17 8.14 -2.39 -0.02 1.15 16 38 H 0.07 1.00 6.53 -2.39 -0.02 0.99 16 39 H 0.07 0.95 8.14 -2.39 -0.02 0.93 16 40 H 0.06 0.82 8.14 -2.39 -0.02 0.80 16 41 H 0.06 0.83 8.14 -2.39 -0.02 0.81 16 42 H 0.08 0.59 8.14 -2.39 -0.02 0.57 16 43 H 0.08 0.57 8.14 -2.39 -0.02 0.56 16 44 H 0.05 0.84 8.14 -2.39 -0.02 0.82 16 45 H 0.05 0.82 8.14 -2.39 -0.02 0.80 16 46 H 0.42 0.94 8.47 -92.71 -0.79 0.16 16 47 H 0.13 0.11 8.14 -2.39 -0.02 0.10 16 48 H 0.14 0.36 8.14 -2.39 -0.02 0.34 16 49 H 0.13 2.20 8.06 -2.91 -0.02 2.18 16 50 H 0.14 2.00 8.06 -2.91 -0.02 1.98 16 51 H 0.19 1.23 8.06 -2.91 -0.02 1.20 16 52 H 0.04 1.45 8.14 -2.39 -0.02 1.43 16 53 H 0.09 2.01 6.50 -2.38 -0.02 1.99 16 54 H 0.03 1.19 8.14 -2.39 -0.02 1.17 16 55 H 0.05 1.95 7.93 -2.39 -0.02 1.93 16 Total: -1.00 -82.20 427.70 1.65 -80.55 By element: Atomic # 1 Polarization: 11.55 SS G_CDS: -0.84 Total: 10.70 kcal Atomic # 6 Polarization: -21.44 SS G_CDS: 6.19 Total: -15.25 kcal Atomic # 7 Polarization: -104.66 SS G_CDS: -5.32 Total: -109.97 kcal Atomic # 8 Polarization: -15.19 SS G_CDS: -0.05 Total: -15.24 kcal Atomic # 14 Polarization: 47.55 SS G_CDS: 1.67 Total: 49.22 kcal Total: -82.20 1.65 -80.55 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001724895121.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 55.739 kcal (2) G-P(sol) polarization free energy of solvation -82.203 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -26.463 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.653 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -80.550 kcal (6) G-S(sol) free energy of system = (1) + (5) -24.810 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.34 seconds