Wall clock time and date at job start Wed Apr 1 2020 05:18:26 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46497 * 1 3 3 C 1.46501 * 120.00473 * 2 1 4 4 C 1.52996 * 109.46946 * 269.99791 * 3 2 1 5 5 N 1.46905 * 109.47077 * 179.97438 * 4 3 2 6 6 C 1.46897 * 111.00193 * 294.30917 * 5 4 3 7 7 C 1.53244 * 109.33967 * 172.74522 * 6 5 4 8 8 N 1.47076 * 108.52059 * 53.82729 * 7 6 5 9 9 C 1.36936 * 120.88202 * 128.84345 * 8 7 6 10 10 H 1.08002 * 120.00043 * 210.77164 * 9 8 7 11 11 C 1.38814 * 120.00170 * 30.76184 * 9 8 7 12 12 N 1.31614 * 119.99836 * 10.60645 * 11 9 8 13 13 Si 1.86799 * 120.00119 * 190.59638 * 11 9 8 14 14 H 1.48504 * 109.46666 * 60.00506 * 13 11 9 15 15 H 1.48496 * 109.47130 * 180.02562 * 13 11 9 16 16 H 1.48499 * 109.47293 * 300.00471 * 13 11 9 17 17 C 1.47082 * 118.23706 * 308.81507 * 8 7 6 18 18 C 1.46898 * 110.99965 * 169.99909 * 5 4 3 19 19 C 1.34782 * 119.99784 * 179.97438 * 2 1 3 20 20 O 1.21278 * 120.00189 * 176.39311 * 19 2 1 21 21 C 1.50697 * 119.99797 * 356.67514 * 19 2 1 22 22 C 1.53003 * 109.47106 * 309.98982 * 21 19 2 23 23 C 1.53000 * 109.47547 * 69.98924 * 21 19 2 24 24 C 1.52995 * 109.47198 * 189.99180 * 21 19 2 25 25 C 1.52998 * 109.47391 * 180.02562 * 24 21 19 26 26 F 1.39903 * 109.46940 * 299.99853 * 24 21 19 27 27 F 1.39899 * 109.47273 * 59.99854 * 24 21 19 28 28 H 1.08997 * 109.47653 * 275.34557 * 1 2 3 29 29 H 1.09001 * 109.46934 * 35.34011 * 1 2 3 30 30 H 1.08997 * 109.47398 * 155.33905 * 1 2 3 31 31 H 1.08998 * 109.46627 * 29.99738 * 3 2 1 32 32 H 1.08994 * 109.47064 * 149.99643 * 3 2 1 33 33 H 1.08994 * 109.47850 * 300.00051 * 4 3 2 34 34 H 1.09002 * 109.47037 * 60.00054 * 4 3 2 35 35 H 1.09003 * 109.49216 * 292.70118 * 6 5 4 36 36 H 1.08998 * 109.49483 * 52.78055 * 6 5 4 37 37 H 1.08997 * 109.62368 * 294.11676 * 7 6 5 38 38 H 1.08998 * 109.62422 * 173.53824 * 7 6 5 39 39 H 0.96996 * 120.00294 * 179.97438 * 12 11 9 40 40 H 1.09007 * 109.62597 * 291.47627 * 17 8 7 41 41 H 1.09004 * 109.78853 * 170.99207 * 17 8 7 42 42 H 1.08994 * 109.49379 * 307.22071 * 18 5 4 43 43 H 1.08998 * 109.49085 * 67.29906 * 18 5 4 44 44 H 1.08998 * 109.47003 * 60.00324 * 22 21 19 45 45 H 1.09007 * 109.47045 * 179.97438 * 22 21 19 46 46 H 1.08995 * 109.47192 * 300.00239 * 22 21 19 47 47 H 1.09004 * 109.47137 * 72.11711 * 23 21 19 48 48 H 1.09001 * 109.47562 * 192.11637 * 23 21 19 49 49 H 1.09002 * 109.47430 * 312.12171 * 23 21 19 50 50 H 1.08995 * 109.47255 * 59.99884 * 25 24 21 51 51 H 1.09004 * 109.47451 * 179.97438 * 25 24 21 52 52 H 1.08999 * 109.46935 * 299.99808 * 25 24 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1976 1.2687 0.0000 4 6 2.4526 1.7102 -1.4425 5 7 3.1867 2.9827 -1.4425 6 6 2.3672 4.0634 -0.8782 7 6 3.2241 5.3249 -0.7284 8 7 3.8421 5.6270 -2.0284 9 6 3.7466 6.8774 -2.5785 10 1 3.7319 6.9954 -3.6519 11 6 3.6684 7.9932 -1.7564 12 7 3.8944 7.8763 -0.4651 13 14 3.2427 9.6606 -2.4829 14 1 1.9054 9.5938 -3.1251 15 1 3.2237 10.6805 -1.4037 16 1 4.2611 10.0331 -3.4975 17 6 4.5660 4.5506 -2.7217 18 6 3.6563 3.3196 -2.7931 19 6 2.1388 -1.1673 0.0005 20 8 3.3498 -1.1684 -0.0656 21 6 1.3872 -2.4712 0.0768 22 6 0.3861 -2.4159 1.2326 23 6 0.6375 -2.7054 -1.2363 24 6 2.3745 -3.6160 0.3116 25 6 1.6115 -4.9399 0.3884 26 9 3.2898 -3.6666 -0.7453 27 9 3.0599 -3.4020 1.5122 28 1 -0.3634 0.0957 1.0231 29 1 -0.3633 0.8383 -0.5944 30 1 -0.3634 -0.9339 -0.4288 31 1 1.6085 2.0283 0.5138 32 1 3.1499 1.1383 0.5139 33 1 3.0416 0.9506 -1.9564 34 1 1.5002 1.8406 -1.9563 35 1 1.5292 4.2699 -1.5440 36 1 1.9901 3.7616 0.0989 37 1 4.0018 5.1529 0.0156 38 1 2.5955 6.1599 -0.4189 39 1 3.8402 8.6560 0.1093 40 1 5.4728 4.3043 -2.1692 41 1 4.8275 4.8716 -3.7300 42 1 4.2141 2.4784 -3.2045 43 1 2.8004 3.5364 -3.4321 44 1 -0.3173 -1.6003 1.0653 45 1 -0.1579 -3.3589 1.2875 46 1 0.9201 -2.2491 2.1681 47 1 1.3502 -2.9583 -2.0214 48 1 -0.0697 -3.5251 -1.1097 49 1 0.0981 -1.7996 -1.5133 50 1 1.0778 -5.1066 -0.5473 51 1 2.3149 -5.7557 0.5552 52 1 0.8981 -4.9009 1.2116 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001732064258.mol2 52 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:18:26 Heat of formation + Delta-G solvation = -102.943488 kcal Electronic energy + Delta-G solvation = -32795.148763 eV Core-core repulsion = 28273.441583 eV Total energy + Delta-G solvation = -4521.707180 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.213 amu Computer time = 1.14 seconds Orbital eigenvalues (eV) -49.93214 -47.93498 -41.54301 -39.75888 -37.32846 -37.08012 -35.81792 -33.43328 -31.68788 -31.51230 -30.15261 -28.51671 -28.15489 -27.57286 -25.61572 -25.12276 -24.28983 -23.29356 -21.69792 -20.87439 -20.33070 -18.76384 -18.36715 -18.22105 -17.90891 -17.25671 -16.90732 -16.65702 -16.41364 -16.04398 -15.94809 -15.37434 -15.30121 -15.17910 -14.98797 -14.98352 -14.61892 -14.58523 -14.56400 -14.28333 -13.96780 -13.79213 -13.67488 -13.46465 -13.32775 -13.22623 -13.09809 -12.91305 -12.78601 -12.65090 -12.50567 -12.42627 -12.31511 -12.28569 -12.15516 -12.03478 -11.87939 -11.59877 -11.49025 -11.41792 -10.69427 -10.60824 -9.80490 -9.28769 -8.64568 -7.88135 -5.39595 1.46317 1.47665 1.48559 1.55720 1.77606 2.49469 2.66279 2.96312 3.10746 3.26491 3.28969 3.39237 3.65010 3.71251 3.89005 3.95477 4.01309 4.04845 4.13443 4.23838 4.30877 4.40152 4.49681 4.55636 4.56578 4.59023 4.63412 4.66431 4.67322 4.71802 4.73320 4.76699 4.81623 4.84053 4.87222 4.94015 5.00784 5.04271 5.16101 5.23653 5.27489 5.33674 5.40993 5.59590 5.67787 6.13356 6.19163 6.28627 6.38423 7.03774 7.12935 7.80661 8.37935 9.18463 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.027458 B = 0.002138 C = 0.002098 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1019.488945 B =13091.011962 C =13344.688584 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.045 3.955 2 N -0.605 5.605 3 C 0.126 3.874 4 C 0.058 3.942 5 N -0.546 5.546 6 C 0.052 3.948 7 C 0.186 3.814 8 N -0.614 5.614 9 C -0.268 4.268 10 H 0.066 0.934 11 C -0.050 4.050 12 N -0.937 5.937 13 Si 0.974 3.026 14 H -0.275 1.275 15 H -0.292 1.292 16 H -0.276 1.276 17 C 0.145 3.855 18 C 0.059 3.941 19 C 0.508 3.492 20 O -0.575 6.575 21 C -0.118 4.118 22 C -0.169 4.169 23 C -0.153 4.153 24 C 0.289 3.711 25 C -0.189 4.189 26 F -0.215 7.215 27 F -0.218 7.218 28 H 0.084 0.916 29 H 0.080 0.920 30 H 0.116 0.884 31 H 0.096 0.904 32 H 0.059 0.941 33 H 0.058 0.942 34 H 0.043 0.957 35 H 0.025 0.975 36 H 0.086 0.914 37 H -0.006 1.006 38 H 0.060 0.940 39 H 0.251 0.749 40 H 0.010 0.990 41 H 0.062 0.938 42 H 0.081 0.919 43 H 0.029 0.971 44 H 0.114 0.886 45 H 0.111 0.889 46 H 0.051 0.949 47 H 0.055 0.945 48 H 0.119 0.881 49 H 0.094 0.906 50 H 0.116 0.884 51 H 0.081 0.919 52 H 0.117 0.883 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -16.947 -27.627 1.818 32.462 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.096 4.096 2 N -0.338 5.338 3 C 0.002 3.998 4 C -0.071 4.071 5 N -0.272 5.272 6 C -0.077 4.077 7 C 0.061 3.939 8 N -0.338 5.338 9 C -0.398 4.398 10 H 0.084 0.916 11 C -0.245 4.245 12 N -0.583 5.583 13 Si 0.802 3.198 14 H -0.200 1.200 15 H -0.218 1.218 16 H -0.202 1.202 17 C 0.019 3.981 18 C -0.070 4.070 19 C 0.296 3.704 20 O -0.454 6.454 21 C -0.122 4.122 22 C -0.225 4.225 23 C -0.210 4.210 24 C 0.252 3.748 25 C -0.246 4.246 26 F -0.196 7.196 27 F -0.199 7.199 28 H 0.102 0.898 29 H 0.099 0.901 30 H 0.134 0.866 31 H 0.114 0.886 32 H 0.077 0.923 33 H 0.076 0.924 34 H 0.061 0.939 35 H 0.044 0.956 36 H 0.104 0.896 37 H 0.012 0.988 38 H 0.079 0.921 39 H 0.061 0.939 40 H 0.028 0.972 41 H 0.080 0.920 42 H 0.099 0.901 43 H 0.047 0.953 44 H 0.132 0.868 45 H 0.129 0.871 46 H 0.071 0.929 47 H 0.074 0.926 48 H 0.138 0.862 49 H 0.113 0.887 50 H 0.134 0.866 51 H 0.100 0.900 52 H 0.136 0.864 Dipole moment (debyes) X Y Z Total from point charges -15.867 -27.532 2.197 31.852 hybrid contribution 0.371 1.531 -0.569 1.675 sum -15.496 -26.000 1.628 30.312 Atomic orbital electron populations 1.22838 0.76854 1.05809 1.04055 1.47787 1.08630 1.04609 1.72734 1.21295 0.97427 0.84816 0.96243 1.22251 0.96576 0.90904 0.97400 1.61773 1.40010 1.02677 1.22702 1.22657 0.94266 0.91851 0.98968 1.20623 0.93692 0.93452 0.86174 1.44351 1.60565 1.07719 1.21199 1.19481 1.45046 0.83766 0.91487 0.91630 1.25980 1.00781 1.01448 0.96319 1.70146 1.53582 1.29861 1.04675 0.85249 0.78461 0.79021 0.77102 1.20041 1.21843 1.20226 1.21099 0.92955 0.87998 0.96045 1.22405 0.98093 0.97997 0.88517 1.21012 0.87464 0.86457 0.75427 1.90778 1.16348 1.87726 1.50511 1.21930 0.97051 0.89881 1.03330 1.22607 0.98075 1.07601 0.94232 1.22239 1.00777 1.05906 0.92056 1.21472 0.83115 0.99015 0.71167 1.22943 1.02009 0.91817 1.07859 1.92983 1.70714 1.97567 1.58319 1.92969 1.82668 1.96428 1.47854 0.89754 0.90149 0.86597 0.88626 0.92252 0.92366 0.93854 0.95638 0.89609 0.98774 0.92140 0.93949 0.97231 0.91961 0.90057 0.95258 0.86809 0.87070 0.92936 0.92555 0.86231 0.88744 0.86580 0.89967 0.86428 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 0.43 8.30 127.77 1.06 1.49 16 2 N -0.61 -12.61 2.87 -846.79 -2.43 -15.04 16 3 C 0.13 3.38 5.34 86.38 0.46 3.84 16 4 C 0.06 1.71 5.29 86.30 0.46 2.17 16 5 N -0.55 -20.23 4.63 -895.27 -4.14 -24.38 16 6 C 0.05 2.00 5.46 86.39 0.47 2.47 16 7 C 0.19 9.44 5.36 86.35 0.46 9.90 16 8 N -0.61 -32.65 3.03 -698.12 -2.11 -34.76 16 9 C -0.27 -15.17 9.62 84.03 0.81 -14.37 16 10 H 0.07 3.60 7.85 -2.91 -0.02 3.58 16 11 C -0.05 -2.84 5.06 84.86 0.43 -2.41 16 12 N -0.94 -56.50 11.07 21.65 0.24 -56.26 16 13 Si 0.97 45.28 29.57 68.60 2.03 47.30 16 14 H -0.27 -12.24 7.11 99.48 0.71 -11.53 16 15 H -0.29 -13.59 7.11 99.48 0.71 -12.88 16 16 H -0.28 -12.49 7.11 99.48 0.71 -11.78 16 17 C 0.14 6.57 6.69 86.35 0.58 7.15 16 18 C 0.06 2.23 5.62 86.38 0.49 2.71 16 19 C 0.51 12.94 6.22 87.66 0.55 13.49 16 20 O -0.58 -21.51 14.51 -3.02 -0.04 -21.56 16 21 C -0.12 -1.80 0.24 -52.93 -0.01 -1.81 16 22 C -0.17 -1.30 7.53 71.98 0.54 -0.76 16 23 C -0.15 -1.30 7.39 71.98 0.53 -0.77 16 24 C 0.29 5.69 1.16 30.59 0.04 5.73 16 25 C -0.19 -1.58 8.70 71.98 0.63 -0.95 16 26 F -0.21 -5.94 15.21 44.97 0.68 -5.26 16 27 F -0.22 -5.87 15.88 44.97 0.71 -5.16 16 28 H 0.08 0.53 7.19 -2.39 -0.02 0.52 16 29 H 0.08 0.73 8.11 -2.39 -0.02 0.71 16 30 H 0.12 0.51 3.13 -2.39 -0.01 0.51 16 31 H 0.10 2.26 6.33 -2.39 -0.02 2.25 16 32 H 0.06 2.02 7.47 -2.39 -0.02 2.01 16 33 H 0.06 1.90 7.97 -2.39 -0.02 1.88 16 34 H 0.04 1.15 8.12 -2.39 -0.02 1.13 16 35 H 0.03 0.99 8.14 -2.39 -0.02 0.97 16 36 H 0.09 2.86 6.16 -2.39 -0.01 2.85 16 37 H -0.01 -0.33 8.14 -2.39 -0.02 -0.35 16 38 H 0.06 3.36 6.24 -2.39 -0.01 3.35 16 39 H 0.25 14.63 8.31 -92.71 -0.77 13.86 16 40 H 0.01 0.47 8.14 -2.38 -0.02 0.45 16 41 H 0.06 2.68 7.96 -2.38 -0.02 2.66 16 42 H 0.08 2.73 7.99 -2.39 -0.02 2.71 16 43 H 0.03 1.09 8.14 -2.39 -0.02 1.07 16 44 H 0.11 0.43 3.72 -2.39 -0.01 0.42 16 45 H 0.11 0.10 6.43 -2.38 -0.02 0.08 16 46 H 0.05 0.65 7.80 -2.39 -0.02 0.63 16 47 H 0.06 0.73 7.49 -2.38 -0.02 0.72 16 48 H 0.12 0.06 7.08 -2.39 -0.02 0.04 16 49 H 0.09 0.59 5.32 -2.39 -0.01 0.58 16 50 H 0.12 0.39 6.72 -2.39 -0.02 0.37 16 51 H 0.08 0.75 8.14 -2.38 -0.02 0.73 16 52 H 0.12 0.36 6.43 -2.39 -0.02 0.34 16 Total: -1.00 -82.70 390.59 3.34 -79.36 By element: Atomic # 1 Polarization: 6.93 SS G_CDS: 0.93 Total: 7.85 kcal Atomic # 6 Polarization: 20.41 SS G_CDS: 7.48 Total: 27.89 kcal Atomic # 7 Polarization: -121.99 SS G_CDS: -8.44 Total: -130.44 kcal Atomic # 8 Polarization: -21.51 SS G_CDS: -0.04 Total: -21.56 kcal Atomic # 9 Polarization: -11.81 SS G_CDS: 1.40 Total: -10.41 kcal Atomic # 14 Polarization: 45.28 SS G_CDS: 2.03 Total: 47.30 kcal Total: -82.70 3.34 -79.36 kcal The number of atoms in the molecule is 52 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001732064258.mol2 52 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -23.586 kcal (2) G-P(sol) polarization free energy of solvation -82.703 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -106.288 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 3.345 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -79.358 kcal (6) G-S(sol) free energy of system = (1) + (5) -102.943 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.14 seconds