Wall clock time and date at job start Wed Apr 1 2020 04:33:55 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46508 * 119.99571 * 2 1 4 4 C 1.38394 * 120.00283 * 180.02562 * 2 1 3 5 5 C 1.39894 * 119.99769 * 4.99743 * 4 2 1 6 6 N 1.31454 * 120.00962 * 180.02562 * 5 4 2 7 7 C 1.33277 * 120.01437 * 0.02562 * 6 5 4 8 8 C 1.47826 * 120.00205 * 180.02562 * 7 6 5 9 9 O 1.21556 * 119.99913 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00151 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47054 * 34.99632 * 11 10 8 13 13 C 1.53005 * 109.46832 * 275.00231 * 11 10 8 14 14 C 1.52999 * 109.47159 * 299.99302 * 13 11 10 15 15 C 1.52997 * 109.47317 * 300.00546 * 14 13 11 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47294 * 154.99900 * 11 10 8 18 18 H 1.09002 * 109.46695 * 179.97438 * 17 11 10 19 19 C 1.52997 * 109.47232 * 299.99951 * 17 11 10 20 20 N 1.46501 * 109.46866 * 184.99942 * 19 17 11 21 21 C 1.36935 * 119.99654 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00358 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00100 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99683 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46737 * 59.99932 * 25 23 21 27 27 H 1.48495 * 109.46855 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47262 * 300.00004 * 25 23 21 29 29 C 1.39411 * 119.99552 * 0.26875 * 7 6 5 30 30 N 1.32053 * 119.98003 * 359.46191 * 29 7 6 31 31 H 1.09004 * 109.46777 * 270.00061 * 1 2 3 32 32 H 1.08999 * 109.47485 * 30.00027 * 1 2 3 33 33 H 1.08998 * 109.46412 * 150.00167 * 1 2 3 34 34 H 1.09008 * 109.46939 * 239.99748 * 3 2 1 35 35 H 1.08998 * 109.47148 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.47157 * 120.00461 * 3 2 1 37 37 H 1.07996 * 119.99350 * 0.02562 * 5 4 2 38 38 H 0.97001 * 119.99990 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.47360 * 59.99916 * 13 11 10 40 40 H 1.09002 * 109.46935 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.46929 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.46716 * 60.00455 * 14 13 11 43 43 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 44 44 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 45 45 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 46 46 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 47 47 H 1.09002 * 109.47223 * 304.99821 * 19 17 11 48 48 H 1.09001 * 109.46547 * 65.00156 * 19 17 11 49 49 H 0.96998 * 120.00018 * 0.02562 * 20 19 17 50 50 H 0.96996 * 119.99982 * 179.97438 * 24 23 21 51 51 H 1.08004 * 120.00473 * 179.72711 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1571 -1.1985 -0.0005 5 6 1.4616 -2.4077 -0.1066 6 7 2.1186 -3.5462 -0.1066 7 6 3.4475 -3.5490 -0.0051 8 6 4.1862 -4.8295 -0.0057 9 8 5.3982 -4.8320 0.0864 10 7 3.5158 -5.9942 -0.1085 11 6 4.2477 -7.2632 -0.1085 12 1 5.1108 -7.1849 0.5527 13 6 4.7206 -7.5791 -1.5290 14 6 3.5092 -7.6891 -2.4571 15 6 2.5896 -8.8084 -1.9649 16 6 2.1167 -8.4924 -0.5445 17 6 3.3281 -8.3825 0.3837 18 1 3.8726 -9.3267 0.3832 19 6 2.8553 -8.0665 1.8041 20 7 2.0726 -9.1924 2.3199 21 6 1.5417 -9.1364 3.5809 22 1 1.7003 -8.2625 4.1953 23 6 0.8006 -10.2034 4.0700 24 7 0.6077 -11.2687 3.3215 25 14 0.0769 -10.1273 5.7905 26 1 -0.8511 -8.9719 5.8864 27 1 -0.6653 -11.3824 6.0712 28 1 1.1713 -9.9667 6.7812 29 6 4.1405 -2.3446 0.1068 30 7 3.4807 -1.2007 0.1015 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3632 -0.8900 -0.5138 34 1 2.8242 1.3266 -0.8900 35 1 1.4891 2.0973 -0.0005 36 1 2.8242 1.3266 0.8899 37 1 0.3847 -2.4057 -0.1885 38 1 2.5486 -5.9922 -0.1824 39 1 5.3758 -6.7817 -1.8796 40 1 5.2656 -8.5231 -1.5290 41 1 3.8461 -7.9137 -3.4691 42 1 2.9646 -6.7449 -2.4570 43 1 3.1342 -9.7526 -1.9650 44 1 1.7264 -8.8864 -2.6259 45 1 1.5721 -7.5482 -0.5445 46 1 1.4619 -9.2900 -0.1937 47 1 3.7201 -7.9006 2.4464 48 1 2.2359 -7.1697 1.7897 49 1 1.9305 -9.9775 1.7682 50 1 0.0902 -12.0144 3.6633 51 1 5.2171 -2.3469 0.1936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC001754339556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:55 Heat of formation + Delta-G solvation = 25.337689 kcal Electronic energy + Delta-G solvation = -30971.464038 eV Core-core repulsion = 26906.008734 eV Total energy + Delta-G solvation = -4065.455304 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.04 seconds Orbital eigenvalues (eV) -41.43392 -40.01011 -38.13889 -37.19318 -34.60881 -34.47090 -33.38033 -31.85748 -31.26637 -29.74414 -29.29690 -28.91162 -26.57868 -25.14249 -24.42301 -23.27499 -22.88199 -22.09226 -21.14097 -20.46125 -18.87098 -18.41563 -17.92698 -17.57531 -16.94867 -16.07965 -15.72787 -15.33665 -15.28026 -14.92819 -14.79548 -14.70165 -14.41486 -14.25893 -13.69421 -13.58336 -13.44454 -13.20043 -13.09654 -12.98949 -12.90957 -12.64435 -12.42426 -12.03042 -11.89049 -11.75850 -11.60724 -11.51453 -11.33007 -10.84819 -10.83000 -10.64913 -10.39636 -10.28997 -10.18829 -10.14085 -9.92017 -9.77952 -9.56145 -9.27370 -8.85613 -8.76222 -8.11190 -6.85808 -5.71962 -2.99591 0.45739 0.93328 2.29812 2.79095 3.25192 3.47035 3.51142 3.52384 3.74380 3.95368 4.00153 4.12163 4.55271 4.61906 4.72287 4.78179 4.86044 4.92402 4.98025 4.98402 5.03899 5.13170 5.15593 5.31955 5.34365 5.37551 5.42499 5.62574 5.69029 5.71455 5.76131 5.84415 5.86618 5.91865 6.13553 6.20822 6.23072 6.23626 6.32460 6.36049 6.46548 6.58846 6.62502 6.69645 6.76372 6.89148 6.97189 7.11888 7.50465 7.74431 7.76517 8.32657 8.47515 9.58540 10.17090 10.52265 11.51013 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.002907 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.708678 B = 9628.680908 C =11629.161991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.087 3.913 2 N -0.601 5.601 3 C 0.099 3.901 4 C 0.369 3.631 5 C -0.004 4.004 6 N -0.372 5.372 7 C -0.045 4.045 8 C 0.582 3.418 9 O -0.544 6.544 10 N -0.695 5.695 11 C 0.153 3.847 12 H 0.089 0.911 13 C -0.128 4.128 14 C -0.116 4.116 15 C -0.120 4.120 16 C -0.111 4.111 17 C -0.101 4.101 18 H 0.086 0.914 19 C 0.159 3.841 20 N -0.730 5.730 21 C -0.236 4.236 22 H 0.068 0.932 23 C -0.015 4.015 24 N -0.935 5.935 25 Si 0.906 3.094 26 H -0.287 1.287 27 H -0.291 1.291 28 H -0.287 1.287 29 C 0.169 3.831 30 N -0.508 5.508 31 H 0.061 0.939 32 H 0.078 0.922 33 H 0.077 0.923 34 H 0.060 0.940 35 H 0.074 0.926 36 H 0.063 0.937 37 H 0.171 0.829 38 H 0.410 0.590 39 H 0.064 0.936 40 H 0.072 0.928 41 H 0.056 0.944 42 H 0.059 0.941 43 H 0.062 0.938 44 H 0.058 0.942 45 H 0.056 0.944 46 H 0.078 0.922 47 H 0.017 0.983 48 H 0.020 0.980 49 H 0.384 0.616 50 H 0.255 0.745 51 H 0.181 0.819 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.818 22.391 -13.812 26.371 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.056 4.056 2 N -0.313 5.313 3 C -0.044 4.044 4 C 0.129 3.871 5 C -0.177 4.177 6 N -0.087 5.087 7 C -0.186 4.186 8 C 0.367 3.633 9 O -0.422 6.422 10 N -0.346 5.346 11 C 0.048 3.952 12 H 0.107 0.893 13 C -0.166 4.166 14 C -0.154 4.154 15 C -0.157 4.157 16 C -0.149 4.149 17 C -0.120 4.120 18 H 0.104 0.896 19 C 0.032 3.968 20 N -0.375 5.375 21 C -0.367 4.367 22 H 0.086 0.914 23 C -0.210 4.210 24 N -0.584 5.584 25 Si 0.737 3.263 26 H -0.214 1.214 27 H -0.217 1.217 28 H -0.213 1.213 29 C 0.007 3.993 30 N -0.230 5.230 31 H 0.080 0.920 32 H 0.097 0.903 33 H 0.095 0.905 34 H 0.079 0.921 35 H 0.093 0.907 36 H 0.082 0.918 37 H 0.188 0.812 38 H 0.248 0.752 39 H 0.083 0.917 40 H 0.090 0.910 41 H 0.074 0.926 42 H 0.078 0.922 43 H 0.081 0.919 44 H 0.077 0.923 45 H 0.075 0.925 46 H 0.097 0.903 47 H 0.035 0.965 48 H 0.037 0.963 49 H 0.218 0.782 50 H 0.065 0.935 51 H 0.198 0.802 Dipole moment (debyes) X Y Z Total from point charges 2.565 22.558 -13.576 26.453 hybrid contribution -1.064 -0.134 0.853 1.370 sum 1.501 22.424 -12.722 25.826 Atomic orbital electron populations 1.21922 0.77458 1.03725 1.02474 1.46216 1.05720 1.03065 1.76280 1.21649 0.96710 0.83396 1.02613 1.19613 0.89868 0.87531 0.90064 1.23213 1.01412 0.86563 1.06503 1.68142 1.07743 1.28782 1.04057 1.21749 0.90633 0.95754 1.10445 1.17470 0.86450 0.82804 0.76603 1.90771 1.12983 1.87112 1.51290 1.45944 1.11600 1.04950 1.72107 1.21023 0.95194 0.82256 0.96693 0.89278 1.21902 0.97775 1.01938 0.95000 1.21495 0.96566 0.99136 0.98193 1.21577 0.98893 0.98408 0.96858 1.21537 0.97464 1.02327 0.93553 1.21620 0.96275 0.97828 0.96293 0.89609 1.20651 0.94054 0.91687 0.90443 1.42350 1.61933 1.17252 1.15926 1.19182 1.25311 1.00887 0.91344 0.91419 1.24710 1.01363 0.96609 0.98342 1.69643 1.45288 1.06826 1.36608 0.86282 0.78868 0.76603 0.84543 1.21366 1.21726 1.21338 1.23499 1.01611 0.85954 0.88208 1.68138 1.06252 1.29560 1.19053 0.92015 0.90310 0.90473 0.92123 0.90720 0.91838 0.81170 0.75219 0.91723 0.90955 0.92557 0.92242 0.91938 0.92326 0.92506 0.90300 0.96492 0.96258 0.78219 0.93548 0.80162 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.09 0.35 10.25 59.85 0.61 0.96 16 2 N -0.60 -4.39 3.37 -189.50 -0.64 -5.03 16 3 C 0.10 0.57 10.19 59.85 0.61 1.18 16 4 C 0.37 3.80 7.37 -155.01 -1.14 2.65 16 5 C 0.00 -0.04 10.42 -17.09 -0.18 -0.22 16 6 N -0.37 -4.77 9.69 -9.44 -0.09 -4.86 16 7 C -0.05 -0.61 6.74 -82.88 -0.56 -1.17 16 8 C 0.58 8.79 7.77 -12.34 -0.10 8.70 16 9 O -0.54 -9.28 15.99 5.32 0.09 -9.19 16 10 N -0.69 -10.02 3.61 -54.76 -0.20 -10.22 16 11 C 0.15 2.23 2.23 -67.93 -0.15 2.08 16 12 H 0.09 1.42 7.58 -51.93 -0.39 1.03 16 13 C -0.13 -1.61 5.60 -26.73 -0.15 -1.76 16 14 C -0.12 -1.37 5.77 -26.73 -0.15 -1.52 16 15 C -0.12 -1.51 5.92 -26.73 -0.16 -1.67 16 16 C -0.11 -1.69 4.91 -26.73 -0.13 -1.82 16 17 C -0.10 -1.64 2.02 -90.62 -0.18 -1.82 16 18 H 0.09 1.42 8.14 -51.93 -0.42 1.00 16 19 C 0.16 3.28 5.42 -4.04 -0.02 3.26 16 20 N -0.73 -18.57 5.33 -59.91 -0.32 -18.89 16 21 C -0.24 -6.72 9.99 -15.06 -0.15 -6.87 16 22 H 0.07 1.90 7.83 -52.49 -0.41 1.48 16 23 C -0.01 -0.42 5.50 -17.43 -0.10 -0.52 16 24 N -0.93 -28.39 13.06 55.49 0.72 -27.67 16 25 Si 0.91 22.76 29.55 -169.99 -5.02 17.74 16 26 H -0.29 -7.09 7.11 56.52 0.40 -6.68 16 27 H -0.29 -7.34 7.11 56.52 0.40 -6.94 16 28 H -0.29 -7.12 7.11 56.52 0.40 -6.72 16 29 C 0.17 2.08 10.76 -17.02 -0.18 1.90 16 30 N -0.51 -5.94 9.71 -11.95 -0.12 -6.06 16 31 H 0.06 0.23 8.14 -51.93 -0.42 -0.19 16 32 H 0.08 0.16 7.92 -51.93 -0.41 -0.25 16 33 H 0.08 0.26 5.98 -51.93 -0.31 -0.05 16 34 H 0.06 0.38 8.14 -51.92 -0.42 -0.04 16 35 H 0.07 0.24 7.79 -51.93 -0.40 -0.17 16 36 H 0.06 0.43 8.14 -51.93 -0.42 0.00 16 37 H 0.17 1.25 6.02 -52.49 -0.32 0.93 16 38 H 0.41 5.87 6.01 -40.82 -0.25 5.62 16 39 H 0.06 0.85 8.14 -51.93 -0.42 0.43 16 40 H 0.07 0.86 8.14 -51.93 -0.42 0.43 16 41 H 0.06 0.60 8.14 -51.93 -0.42 0.17 16 42 H 0.06 0.72 7.60 -51.93 -0.39 0.33 16 43 H 0.06 0.78 8.14 -51.93 -0.42 0.36 16 44 H 0.06 0.69 8.14 -51.93 -0.42 0.27 16 45 H 0.06 0.85 6.50 -51.93 -0.34 0.51 16 46 H 0.08 1.40 7.18 -51.93 -0.37 1.03 16 47 H 0.02 0.37 8.14 -51.93 -0.42 -0.05 16 48 H 0.02 0.41 7.61 -51.93 -0.40 0.02 16 49 H 0.38 10.13 6.85 -40.82 -0.28 9.85 16 50 H 0.25 7.51 8.31 -40.82 -0.34 7.17 16 51 H 0.18 2.00 7.63 -52.48 -0.40 1.60 16 LS Contribution 404.72 15.07 6.10 6.10 Total: -1.00 -33.94 404.72 -9.64 -43.59 By element: Atomic # 1 Polarization: 19.17 SS G_CDS: -8.04 Total: 11.13 kcal Atomic # 6 Polarization: 5.49 SS G_CDS: -2.13 Total: 3.36 kcal Atomic # 7 Polarization: -72.08 SS G_CDS: -0.64 Total: -72.72 kcal Atomic # 8 Polarization: -9.28 SS G_CDS: 0.09 Total: -9.19 kcal Atomic # 14 Polarization: 22.76 SS G_CDS: -5.02 Total: 17.74 kcal Total LS contribution 6.10 Total: 6.10 kcal Total: -33.94 -9.64 -43.59 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754339556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 68.924 kcal (2) G-P(sol) polarization free energy of solvation -33.941 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 34.983 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.645 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -43.586 kcal (6) G-S(sol) free energy of system = (1) + (5) 25.338 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.04 seconds