Wall clock time and date at job start Wed Apr 1 2020 04:33:54 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46503 * 1 3 3 C 1.46508 * 119.99571 * 2 1 4 4 C 1.38394 * 120.00283 * 180.02562 * 2 1 3 5 5 C 1.39894 * 119.99769 * 4.99743 * 4 2 1 6 6 N 1.31454 * 120.00962 * 180.02562 * 5 4 2 7 7 C 1.33277 * 120.01437 * 0.02562 * 6 5 4 8 8 C 1.47826 * 120.00205 * 180.02562 * 7 6 5 9 9 O 1.21556 * 119.99913 * 179.97438 * 8 7 6 10 10 N 1.34774 * 120.00151 * 359.97438 * 8 7 6 11 11 C 1.46496 * 120.00256 * 180.02562 * 10 8 7 12 12 H 1.09001 * 109.47054 * 34.99632 * 11 10 8 13 13 C 1.53005 * 109.46832 * 275.00231 * 11 10 8 14 14 C 1.52999 * 109.47159 * 299.99302 * 13 11 10 15 15 C 1.52997 * 109.47317 * 300.00546 * 14 13 11 16 16 C 1.53000 * 109.47060 * 59.99960 * 15 14 13 17 17 C 1.52997 * 109.47294 * 154.99900 * 11 10 8 18 18 H 1.09002 * 109.46695 * 179.97438 * 17 11 10 19 19 C 1.52997 * 109.47232 * 299.99951 * 17 11 10 20 20 N 1.46501 * 109.46866 * 184.99942 * 19 17 11 21 21 C 1.36935 * 119.99654 * 180.02562 * 20 19 17 22 22 H 1.08001 * 120.00358 * 359.97438 * 21 20 19 23 23 C 1.38816 * 120.00100 * 180.02562 * 21 20 19 24 24 N 1.31619 * 119.99683 * 359.97438 * 23 21 20 25 25 Si 1.86803 * 120.00126 * 179.97438 * 23 21 20 26 26 H 1.48500 * 109.46737 * 59.99932 * 25 23 21 27 27 H 1.48495 * 109.46855 * 179.97438 * 25 23 21 28 28 H 1.48493 * 109.47262 * 300.00004 * 25 23 21 29 29 C 1.39411 * 119.99552 * 0.26875 * 7 6 5 30 30 N 1.32053 * 119.98003 * 359.46191 * 29 7 6 31 31 H 1.09004 * 109.46777 * 270.00061 * 1 2 3 32 32 H 1.08999 * 109.47485 * 30.00027 * 1 2 3 33 33 H 1.08998 * 109.46412 * 150.00167 * 1 2 3 34 34 H 1.09008 * 109.46939 * 239.99748 * 3 2 1 35 35 H 1.08998 * 109.47148 * 359.97438 * 3 2 1 36 36 H 1.08998 * 109.47157 * 120.00461 * 3 2 1 37 37 H 1.07996 * 119.99350 * 0.02562 * 5 4 2 38 38 H 0.97001 * 119.99990 * 0.02562 * 10 8 7 39 39 H 1.09000 * 109.47360 * 59.99916 * 13 11 10 40 40 H 1.09002 * 109.46935 * 179.97438 * 13 11 10 41 41 H 1.08996 * 109.46929 * 179.97438 * 14 13 11 42 42 H 1.09002 * 109.46716 * 60.00455 * 14 13 11 43 43 H 1.09002 * 109.47153 * 299.99641 * 15 14 13 44 44 H 1.09001 * 109.46832 * 179.97438 * 15 14 13 45 45 H 1.08992 * 109.47399 * 59.99823 * 16 15 14 46 46 H 1.09004 * 109.46724 * 180.02562 * 16 15 14 47 47 H 1.09002 * 109.47223 * 304.99821 * 19 17 11 48 48 H 1.09001 * 109.46547 * 65.00156 * 19 17 11 49 49 H 0.96998 * 120.00018 * 0.02562 * 20 19 17 50 50 H 0.96996 * 119.99982 * 179.97438 * 24 23 21 51 51 H 1.08004 * 120.00473 * 179.72711 * 29 7 6 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1975 1.2689 0.0000 4 6 2.1571 -1.1985 -0.0005 5 6 1.4616 -2.4077 -0.1066 6 7 2.1186 -3.5462 -0.1066 7 6 3.4475 -3.5490 -0.0051 8 6 4.1862 -4.8295 -0.0057 9 8 5.3982 -4.8320 0.0864 10 7 3.5158 -5.9942 -0.1085 11 6 4.2477 -7.2632 -0.1085 12 1 5.1108 -7.1849 0.5527 13 6 4.7206 -7.5791 -1.5290 14 6 3.5092 -7.6891 -2.4571 15 6 2.5896 -8.8084 -1.9649 16 6 2.1167 -8.4924 -0.5445 17 6 3.3281 -8.3825 0.3837 18 1 3.8726 -9.3267 0.3832 19 6 2.8553 -8.0665 1.8041 20 7 2.0726 -9.1924 2.3199 21 6 1.5417 -9.1364 3.5809 22 1 1.7003 -8.2625 4.1953 23 6 0.8006 -10.2034 4.0700 24 7 0.6077 -11.2687 3.3215 25 14 0.0769 -10.1273 5.7905 26 1 -0.8511 -8.9719 5.8864 27 1 -0.6653 -11.3824 6.0712 28 1 1.1713 -9.9667 6.7812 29 6 4.1405 -2.3446 0.1068 30 7 3.4807 -1.2007 0.1015 31 1 -0.3633 0.0000 1.0277 32 1 -0.3634 0.8899 -0.5138 33 1 -0.3632 -0.8900 -0.5138 34 1 2.8242 1.3266 -0.8900 35 1 1.4891 2.0973 -0.0005 36 1 2.8242 1.3266 0.8899 37 1 0.3847 -2.4057 -0.1885 38 1 2.5486 -5.9922 -0.1824 39 1 5.3758 -6.7817 -1.8796 40 1 5.2656 -8.5231 -1.5290 41 1 3.8461 -7.9137 -3.4691 42 1 2.9646 -6.7449 -2.4570 43 1 3.1342 -9.7526 -1.9650 44 1 1.7264 -8.8864 -2.6259 45 1 1.5721 -7.5482 -0.5445 46 1 1.4619 -9.2900 -0.1937 47 1 3.7201 -7.9006 2.4464 48 1 2.2359 -7.1697 1.7897 49 1 1.9305 -9.9775 1.7682 50 1 0.0902 -12.0144 3.6633 51 1 5.2171 -2.3469 0.1936 RHF calculation, no. of doubly occupied orbitals= 66 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001754339556.mol2 51 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:33:54 Heat of formation + Delta-G solvation = 3.135484 kcal Electronic energy + Delta-G solvation = -30972.426798 eV Core-core repulsion = 26906.008734 eV Total energy + Delta-G solvation = -4066.418064 eV No. of doubly occupied orbitals = 66 Molecular weight (most abundant/longest-lived isotopes) = 347.206 amu Computer time = 1.33 seconds Orbital eigenvalues (eV) -42.31704 -41.15949 -39.28553 -37.92810 -36.45401 -35.38372 -34.48592 -33.70266 -32.14289 -31.23092 -30.61877 -29.36036 -27.42817 -26.81805 -25.24971 -24.68061 -24.11051 -23.19525 -22.21380 -21.85156 -20.03204 -19.56019 -19.08807 -18.66822 -18.23945 -16.93018 -16.78149 -16.69544 -16.30845 -16.16841 -16.01593 -15.58856 -15.45005 -15.35372 -15.13132 -14.98046 -14.73582 -14.48984 -14.44538 -13.99981 -13.48609 -13.41455 -13.33199 -13.10527 -12.95962 -12.87363 -12.84510 -12.70008 -12.59622 -12.55336 -12.41448 -12.15082 -11.92180 -11.84224 -11.43207 -11.31360 -11.17065 -11.14314 -11.01509 -10.84356 -10.18529 -9.99575 -8.98575 -8.80943 -7.94626 -5.22892 -0.44660 0.07413 1.46059 1.49093 1.55373 1.69451 1.73792 2.16124 2.55718 2.79859 3.07370 3.22519 3.35772 3.38054 3.59755 3.80615 3.85843 3.90555 4.02424 4.10089 4.20186 4.25526 4.35542 4.43680 4.49586 4.49919 4.51216 4.56386 4.59577 4.68169 4.73686 4.76359 4.90018 4.91337 4.93333 5.02815 5.06325 5.10351 5.18724 5.28440 5.32421 5.35957 5.46915 5.47926 5.53602 5.62222 5.63819 5.94290 6.27166 6.28231 6.51916 6.77534 7.17468 7.34420 8.09461 8.35478 9.28439 Molecular weight = 347.21amu Principal moments of inertia in cm(-1) A = 0.008854 B = 0.002907 C = 0.002407 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 3161.708678 B = 9628.680908 C =11629.161991 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.076 3.924 2 N -0.592 5.592 3 C 0.094 3.906 4 C 0.368 3.632 5 C -0.001 4.001 6 N -0.388 5.388 7 C -0.074 4.074 8 C 0.582 3.418 9 O -0.571 6.571 10 N -0.692 5.692 11 C 0.159 3.841 12 H 0.073 0.927 13 C -0.121 4.121 14 C -0.109 4.109 15 C -0.112 4.112 16 C -0.105 4.105 17 C -0.088 4.088 18 H 0.083 0.917 19 C 0.163 3.837 20 N -0.738 5.738 21 C -0.248 4.248 22 H 0.067 0.933 23 C -0.071 4.071 24 N -0.966 5.966 25 Si 0.971 3.029 26 H -0.278 1.278 27 H -0.292 1.292 28 H -0.281 1.281 29 C 0.170 3.830 30 N -0.523 5.523 31 H 0.069 0.931 32 H 0.105 0.895 33 H 0.086 0.914 34 H 0.055 0.945 35 H 0.107 0.893 36 H 0.052 0.948 37 H 0.202 0.798 38 H 0.411 0.589 39 H 0.061 0.939 40 H 0.083 0.917 41 H 0.077 0.923 42 H 0.056 0.944 43 H 0.066 0.934 44 H 0.072 0.928 45 H 0.058 0.942 46 H 0.050 0.950 47 H 0.004 0.996 48 H 0.017 0.983 49 H 0.377 0.623 50 H 0.252 0.748 51 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 0.477 24.323 -14.656 28.401 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.065 4.065 2 N -0.302 5.302 3 C -0.048 4.048 4 C 0.125 3.875 5 C -0.175 4.175 6 N -0.104 5.104 7 C -0.213 4.213 8 C 0.368 3.632 9 O -0.451 6.451 10 N -0.343 5.343 11 C 0.054 3.946 12 H 0.091 0.909 13 C -0.160 4.160 14 C -0.146 4.146 15 C -0.150 4.150 16 C -0.142 4.142 17 C -0.107 4.107 18 H 0.101 0.899 19 C 0.036 3.964 20 N -0.381 5.381 21 C -0.380 4.380 22 H 0.085 0.915 23 C -0.263 4.263 24 N -0.616 5.616 25 Si 0.800 3.200 26 H -0.204 1.204 27 H -0.218 1.218 28 H -0.207 1.207 29 C 0.009 3.991 30 N -0.247 5.247 31 H 0.087 0.913 32 H 0.123 0.877 33 H 0.104 0.896 34 H 0.074 0.926 35 H 0.126 0.874 36 H 0.071 0.929 37 H 0.218 0.782 38 H 0.249 0.751 39 H 0.080 0.920 40 H 0.102 0.898 41 H 0.096 0.904 42 H 0.075 0.925 43 H 0.085 0.915 44 H 0.090 0.910 45 H 0.076 0.924 46 H 0.069 0.931 47 H 0.022 0.978 48 H 0.035 0.965 49 H 0.210 0.790 50 H 0.061 0.939 51 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 1.225 24.538 -14.427 28.491 hybrid contribution -0.742 -0.522 1.127 1.447 sum 0.484 24.016 -13.300 27.457 Atomic orbital electron populations 1.22244 0.75213 1.05533 1.03490 1.46640 1.07171 1.02515 1.73848 1.21801 0.97511 0.83636 1.01853 1.19925 0.89636 0.88828 0.89107 1.23729 1.02654 0.85925 1.05219 1.68085 1.07482 1.30098 1.04712 1.21453 0.91140 0.95100 1.13566 1.17722 0.86247 0.83419 0.75855 1.90739 1.14100 1.87585 1.52708 1.45900 1.11529 1.04817 1.72055 1.20910 0.94060 0.81784 0.97870 0.90926 1.21854 0.98285 1.02346 0.93473 1.21446 0.95702 0.98595 0.98892 1.21523 0.99640 0.98892 0.94929 1.21445 0.96363 1.01346 0.95093 1.21458 0.97009 0.98342 0.93864 0.89869 1.20714 0.92770 0.90136 0.92789 1.42490 1.62258 1.18185 1.15207 1.19531 1.25104 1.00840 0.92483 0.91453 1.25511 1.02219 0.96406 1.02213 1.69794 1.46177 1.07386 1.38277 0.85248 0.78128 0.76609 0.79998 1.20399 1.21784 1.20732 1.23518 1.01840 0.85934 0.87829 1.68183 1.07144 1.29054 1.20278 0.91286 0.87693 0.89590 0.92597 0.87417 0.92898 0.78180 0.75114 0.91989 0.89835 0.90423 0.92504 0.91541 0.90969 0.92353 0.93119 0.97789 0.96511 0.79024 0.93902 0.79943 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.08 0.34 10.25 127.77 1.31 1.65 16 2 N -0.59 -7.16 3.37 -753.45 -2.54 -9.70 16 3 C 0.09 0.87 10.19 127.77 1.30 2.18 16 4 C 0.37 7.03 7.37 133.35 0.98 8.01 16 5 C 0.00 -0.01 10.42 85.15 0.89 0.88 16 6 N -0.39 -9.82 9.69 -183.78 -1.78 -11.60 16 7 C -0.07 -2.04 6.74 41.75 0.28 -1.76 16 8 C 0.58 18.09 7.77 86.78 0.67 18.77 16 9 O -0.57 -20.21 15.99 -3.89 -0.06 -20.27 16 10 N -0.69 -20.32 3.61 -445.43 -1.61 -21.92 16 11 C 0.16 4.68 2.23 44.99 0.10 4.78 16 12 H 0.07 2.40 7.58 -2.39 -0.02 2.38 16 13 C -0.12 -2.95 5.60 30.60 0.17 -2.77 16 14 C -0.11 -2.35 5.77 30.59 0.18 -2.18 16 15 C -0.11 -2.66 5.92 30.59 0.18 -2.48 16 16 C -0.10 -3.18 4.91 30.60 0.15 -3.03 16 17 C -0.09 -2.88 2.02 -10.79 -0.02 -2.91 16 18 H 0.08 2.80 8.14 -2.39 -0.02 2.78 16 19 C 0.16 6.90 5.42 86.38 0.47 7.37 16 20 N -0.74 -38.49 5.33 -343.45 -1.83 -40.33 16 21 C -0.25 -14.30 9.99 84.03 0.84 -13.46 16 22 H 0.07 3.81 7.83 -2.91 -0.02 3.79 16 23 C -0.07 -4.15 5.50 84.86 0.47 -3.68 16 24 N -0.97 -59.45 13.06 21.65 0.28 -59.17 16 25 Si 0.97 46.97 29.55 68.60 2.03 49.00 16 26 H -0.28 -12.93 7.11 99.48 0.71 -12.22 16 27 H -0.29 -14.04 7.11 99.48 0.71 -13.33 16 28 H -0.28 -13.23 7.11 99.48 0.71 -12.53 16 29 C 0.17 4.28 10.76 84.94 0.91 5.19 16 30 N -0.52 -12.05 9.71 -191.73 -1.86 -13.91 16 31 H 0.07 0.28 8.14 -2.39 -0.02 0.26 16 32 H 0.10 -0.01 7.92 -2.39 -0.02 -0.03 16 33 H 0.09 0.27 5.98 -2.39 -0.01 0.25 16 34 H 0.06 0.60 8.14 -2.38 -0.02 0.58 16 35 H 0.11 0.29 7.79 -2.39 -0.02 0.27 16 36 H 0.05 0.63 8.14 -2.39 -0.02 0.61 16 37 H 0.20 2.39 6.02 -2.91 -0.02 2.38 16 38 H 0.41 11.88 6.01 -92.71 -0.56 11.33 16 39 H 0.06 1.58 8.14 -2.39 -0.02 1.56 16 40 H 0.08 1.85 8.14 -2.39 -0.02 1.84 16 41 H 0.08 1.41 8.14 -2.39 -0.02 1.39 16 42 H 0.06 1.28 7.60 -2.39 -0.02 1.26 16 43 H 0.07 1.54 8.14 -2.39 -0.02 1.52 16 44 H 0.07 1.55 8.14 -2.39 -0.02 1.53 16 45 H 0.06 1.74 6.50 -2.39 -0.02 1.72 16 46 H 0.05 1.84 7.18 -2.39 -0.02 1.82 16 47 H 0.00 0.19 8.14 -2.39 -0.02 0.17 16 48 H 0.02 0.73 7.61 -2.39 -0.02 0.71 16 49 H 0.38 20.50 6.85 -92.71 -0.64 19.86 16 50 H 0.25 15.03 8.31 -92.71 -0.77 14.26 16 51 H 0.18 4.27 7.63 -2.91 -0.02 4.25 16 Total: -1.00 -74.21 404.72 1.27 -72.94 By element: Atomic # 1 Polarization: 38.66 SS G_CDS: -0.24 Total: 38.42 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 8.88 Total: 16.56 kcal Atomic # 7 Polarization: -147.30 SS G_CDS: -9.34 Total: -156.64 kcal Atomic # 8 Polarization: -20.21 SS G_CDS: -0.06 Total: -20.27 kcal Atomic # 14 Polarization: 46.97 SS G_CDS: 2.03 Total: 49.00 kcal Total: -74.21 1.27 -72.94 kcal The number of atoms in the molecule is 51 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001754339556.mol2 51 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 76.071 kcal (2) G-P(sol) polarization free energy of solvation -74.207 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 1.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.272 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.935 kcal (6) G-S(sol) free energy of system = (1) + (5) 3.135 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.33 seconds