Wall clock time and date at job start Wed Apr 1 2020 06:21:05 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46900 * 1 3 3 C 1.46906 * 110.99728 * 2 1 4 4 C 1.50699 * 109.47140 * 66.04805 * 3 2 1 5 5 H 1.08003 * 119.99962 * 359.97438 * 4 3 2 6 6 C 1.37873 * 119.99861 * 180.02562 * 4 3 2 7 7 N 1.31522 * 120.00244 * 359.97438 * 6 4 3 8 8 Si 1.86803 * 119.99980 * 180.02562 * 6 4 3 9 9 H 1.48498 * 109.46946 * 59.99897 * 8 6 4 10 10 H 1.48506 * 109.46938 * 179.97438 * 8 6 4 11 11 H 1.48500 * 109.46921 * 299.99580 * 8 6 4 12 12 C 1.46905 * 110.99850 * 236.04849 * 2 1 3 13 13 C 1.53000 * 109.47114 * 293.94896 * 12 2 1 14 14 H 1.09000 * 109.46550 * 60.00064 * 13 12 2 15 15 O 1.42901 * 109.46928 * 300.00575 * 13 12 2 16 16 C 1.52996 * 109.47000 * 180.02562 * 13 12 2 17 17 N 1.46899 * 109.46798 * 185.00066 * 16 13 12 18 18 C 1.46901 * 111.00076 * 179.97438 * 17 16 13 19 19 C 1.53117 * 109.52403 * 274.68651 * 18 17 16 20 20 C 1.53039 * 109.27860 * 182.43801 * 19 18 17 21 21 N 1.46852 * 109.52280 * 59.17899 * 20 19 18 22 22 C 1.39668 * 110.99887 * 174.16145 * 21 20 19 23 23 C 1.38911 * 120.07795 * 123.93346 * 22 21 20 24 24 C 1.38108 * 119.92775 * 179.76949 * 23 22 21 25 25 C 1.38284 * 120.07131 * 0.50528 * 24 23 22 26 26 C 1.38288 * 120.15265 * 359.74671 * 25 24 23 27 27 C 1.38099 * 120.07515 * 359.97438 * 26 25 24 28 28 C 1.46846 * 111.19446 * 298.25515 * 21 20 19 29 29 C 1.53037 * 109.52347 * 61.74736 * 28 21 20 30 30 H 1.08996 * 109.47030 * 59.99921 * 1 2 3 31 31 H 1.08999 * 109.46702 * 180.02562 * 1 2 3 32 32 H 1.08996 * 109.46890 * 299.99929 * 1 2 3 33 33 H 1.09004 * 109.47040 * 186.04743 * 3 2 1 34 34 H 1.09000 * 109.47033 * 306.04695 * 3 2 1 35 35 H 0.96992 * 120.00038 * 179.97438 * 7 6 4 36 36 H 1.08997 * 109.46807 * 53.95411 * 12 2 1 37 37 H 1.09000 * 109.46636 * 173.95277 * 12 2 1 38 38 H 0.96697 * 113.99735 * 299.99403 * 15 13 12 39 39 H 1.08995 * 109.47058 * 304.99907 * 16 13 12 40 40 H 1.08998 * 109.46953 * 65.00454 * 16 13 12 41 41 H 1.00896 * 111.00687 * 303.95477 * 17 16 13 42 42 H 1.09002 * 109.52255 * 34.87317 * 18 17 16 43 43 H 1.09004 * 109.50232 * 302.37816 * 19 18 17 44 44 H 1.08998 * 109.50751 * 62.49327 * 19 18 17 45 45 H 1.08996 * 109.46007 * 299.15945 * 20 19 18 46 46 H 1.09001 * 109.45288 * 179.18618 * 20 19 18 47 47 H 1.08004 * 120.03359 * 359.97438 * 23 22 21 48 48 H 1.07994 * 119.95898 * 180.25274 * 24 23 22 49 49 H 1.08003 * 119.92502 * 179.72628 * 25 24 23 50 50 H 1.08006 * 119.96108 * 179.97438 * 26 25 24 51 51 H 1.07996 * 120.04192 * 179.97438 * 27 26 25 52 52 H 1.08992 * 109.46249 * 301.72488 * 28 21 20 53 53 H 1.09007 * 109.45118 * 181.74998 * 28 21 20 54 54 H 1.09002 * 109.50485 * 180.87397 * 29 28 21 55 55 H 1.09003 * 109.50695 * 60.75240 * 29 28 21 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4690 0.0000 0.0000 3 6 1.9954 1.3715 0.0000 4 6 1.6369 2.0472 1.2984 5 1 1.0739 1.5115 2.0485 6 6 2.0267 3.3495 1.5284 7 7 2.7118 4.0020 0.6149 8 14 1.5829 4.1868 3.1382 9 1 2.1758 3.4297 4.2698 10 1 2.1150 5.5733 3.1381 11 1 0.1058 4.2230 3.2866 12 6 1.9954 -0.7660 -1.1377 13 6 1.6315 -2.2426 -0.9704 14 1 0.5472 -2.3474 -0.9323 15 8 2.2010 -2.7391 0.2426 16 6 2.1803 -3.0404 -2.1549 17 7 1.7299 -4.4352 -2.0566 18 6 2.2384 -5.2331 -3.1803 19 6 1.2950 -5.0901 -4.3777 20 6 1.7967 -5.9709 -5.5243 21 7 1.8469 -7.3704 -5.0823 22 6 2.1747 -8.2186 -6.1424 23 6 3.2702 -9.0668 -6.0423 24 6 3.5886 -9.9077 -7.0906 25 6 2.8244 -9.8984 -8.2430 26 6 1.7362 -9.0516 -8.3481 27 6 1.4088 -8.2123 -7.3014 28 6 2.7828 -7.5405 -3.9635 29 6 2.3105 -6.7067 -2.7703 30 1 -0.3633 0.5138 -0.8899 31 1 -0.3633 -1.0277 0.0005 32 1 -0.3633 0.5138 0.8900 33 1 3.0797 1.3445 -0.1083 34 1 1.5610 1.9274 -0.8309 35 1 2.9857 4.9183 0.7765 36 1 1.5611 -0.3871 -2.0628 37 1 3.0797 -0.6610 -1.1757 38 1 3.1653 -2.6770 0.2786 39 1 1.8160 -2.6058 -3.0857 40 1 3.2698 -3.0086 -2.1409 41 1 2.0000 -4.8410 -1.1732 42 1 3.2332 -4.8825 -3.4553 43 1 0.2916 -5.4040 -4.0899 44 1 1.2725 -4.0495 -4.7012 45 1 2.7945 -5.6475 -5.8208 46 1 1.1189 -5.8823 -6.3734 47 1 3.8703 -9.0710 -5.1443 48 1 4.4378 -10.5702 -7.0117 49 1 3.0782 -10.5538 -9.0631 50 1 1.1417 -9.0466 -9.2498 51 1 0.5591 -7.5509 -7.3842 52 1 3.7759 -7.2099 -4.2674 53 1 2.8212 -8.5921 -3.6791 54 1 3.0137 -6.8210 -1.9454 55 1 1.3230 -7.0459 -2.4573 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000563346872.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 06:21:05 Heat of formation + Delta-G solvation = -33.502473 kcal Electronic energy + Delta-G solvation = -29966.402016 eV Core-core repulsion = 26001.935555 eV Total energy + Delta-G solvation = -3964.466462 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -41.36338 -39.74951 -38.91578 -37.34493 -36.21987 -34.61696 -33.18041 -32.59866 -31.36455 -30.94357 -29.50211 -28.82003 -27.30382 -25.58459 -24.89478 -24.12310 -22.80556 -22.40445 -22.10586 -21.74694 -20.66989 -18.65977 -18.56373 -17.46919 -17.20513 -16.76432 -16.69502 -16.56115 -16.37992 -15.97818 -15.81113 -15.57074 -15.31096 -15.12693 -15.01332 -14.86499 -14.50600 -14.38327 -13.96830 -13.89483 -13.71611 -13.63788 -13.35278 -13.19219 -12.97630 -12.78546 -12.57747 -12.56365 -12.40844 -12.37340 -12.28512 -12.17342 -12.02649 -11.97373 -11.69686 -11.58403 -11.39813 -11.30592 -10.70324 -10.62171 -10.61446 -9.84830 -9.38751 -8.96527 -8.77194 -8.20842 -6.30894 0.46786 0.49641 1.41186 1.44452 1.52404 2.40282 2.63945 2.87087 2.98609 3.11603 3.38906 3.68662 3.70307 3.78718 3.93859 4.02249 4.08768 4.12989 4.16929 4.18465 4.24975 4.28931 4.32983 4.43138 4.46460 4.50986 4.55343 4.58341 4.62472 4.64922 4.72310 4.73443 4.76627 4.76943 4.84728 4.87141 5.05843 5.07597 5.13993 5.15379 5.16605 5.19372 5.30187 5.33942 5.37942 5.53214 5.64441 5.67383 5.87397 6.03228 6.05550 6.08508 6.31972 6.37027 6.46611 6.63389 6.84924 6.96267 7.38950 8.89876 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.034559 B = 0.001445 C = 0.001427 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 810.002749 B =19374.440774 C =19612.921967 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.042 3.958 2 N -0.538 5.538 3 C 0.207 3.793 4 C -0.525 4.525 5 H 0.061 0.939 6 C 0.002 3.998 7 N -0.935 5.935 8 Si 0.969 3.031 9 H -0.269 1.269 10 H -0.282 1.282 11 H -0.268 1.268 12 C 0.024 3.976 13 C 0.129 3.871 14 H 0.094 0.906 15 O -0.559 6.559 16 C 0.041 3.959 17 N -0.683 5.683 18 C 0.089 3.911 19 C -0.102 4.102 20 C 0.065 3.935 21 N -0.496 5.496 22 C 0.099 3.901 23 C -0.186 4.186 24 C -0.101 4.101 25 C -0.157 4.157 26 C -0.102 4.102 27 C -0.157 4.157 28 C 0.057 3.943 29 C -0.113 4.113 30 H 0.009 0.991 31 H 0.076 0.924 32 H 0.054 0.946 33 H 0.004 0.996 34 H -0.040 1.040 35 H 0.264 0.736 36 H 0.031 0.969 37 H 0.067 0.933 38 H 0.379 0.621 39 H 0.079 0.921 40 H 0.040 0.960 41 H 0.350 0.650 42 H 0.041 0.959 43 H 0.069 0.931 44 H 0.069 0.931 45 H 0.040 0.960 46 H 0.087 0.913 47 H 0.134 0.866 48 H 0.139 0.861 49 H 0.138 0.862 50 H 0.140 0.860 51 H 0.127 0.873 52 H 0.048 0.952 53 H 0.090 0.910 54 H 0.083 0.917 55 H 0.073 0.927 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 1.525 -29.598 -17.391 34.363 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.106 4.106 2 N -0.262 5.262 3 C 0.081 3.919 4 C -0.563 4.563 5 H 0.079 0.921 6 C -0.196 4.196 7 N -0.575 5.575 8 Si 0.794 3.206 9 H -0.194 1.194 10 H -0.207 1.207 11 H -0.193 1.193 12 C -0.105 4.105 13 C 0.069 3.931 14 H 0.112 0.888 15 O -0.365 6.365 16 C -0.089 4.089 17 N -0.316 5.316 18 C -0.021 4.021 19 C -0.141 4.141 20 C -0.061 4.061 21 N -0.211 5.211 22 C 0.001 3.999 23 C -0.206 4.206 24 C -0.120 4.120 25 C -0.176 4.176 26 C -0.120 4.120 27 C -0.177 4.177 28 C -0.070 4.070 29 C -0.151 4.151 30 H 0.027 0.973 31 H 0.095 0.905 32 H 0.073 0.927 33 H 0.022 0.978 34 H -0.022 1.022 35 H 0.073 0.927 36 H 0.049 0.951 37 H 0.086 0.914 38 H 0.227 0.773 39 H 0.098 0.902 40 H 0.059 0.941 41 H 0.170 0.830 42 H 0.059 0.941 43 H 0.088 0.912 44 H 0.087 0.913 45 H 0.058 0.942 46 H 0.105 0.895 47 H 0.152 0.848 48 H 0.157 0.843 49 H 0.156 0.844 50 H 0.158 0.842 51 H 0.145 0.855 52 H 0.066 0.934 53 H 0.109 0.891 54 H 0.102 0.898 55 H 0.092 0.908 Dipole moment (debyes) X Y Z Total from point charges 0.051 -29.694 -16.903 34.168 hybrid contribution 1.770 1.617 -0.287 2.414 sum 1.821 -28.077 -17.190 32.972 Atomic orbital electron populations 1.22203 0.87917 1.00801 0.99704 1.61941 1.07896 1.14800 1.41524 1.19404 0.93643 0.83965 0.94883 1.21447 1.34921 0.97545 1.02433 0.92103 1.25904 0.94970 0.97990 1.00707 1.70074 1.39356 1.11878 1.36212 0.85437 0.78814 0.77169 0.79200 1.19358 1.20724 1.19308 1.22820 1.00181 0.95448 0.92071 1.21771 0.98567 0.88926 0.83819 0.88788 1.86564 1.26086 1.84716 1.39123 1.22518 0.97767 0.89727 0.98885 1.60351 1.63886 1.01481 1.05862 1.21565 0.95868 0.93074 0.91587 1.21570 0.99947 0.98939 0.93610 1.22205 1.00613 0.85109 0.98183 1.59033 1.49047 1.06200 1.06854 1.19170 0.93732 0.96001 0.90973 1.21536 0.97274 1.00667 1.01155 1.21317 0.99699 0.97920 0.93059 1.21391 0.96608 1.00739 0.98859 1.21312 0.97179 0.94912 0.98625 1.20999 1.00814 1.02483 0.93433 1.22239 0.93250 1.01346 0.90158 1.21743 1.02962 0.93136 0.97292 0.97282 0.90543 0.92749 0.97751 1.02215 0.92685 0.95068 0.91418 0.77325 0.90221 0.94139 0.82998 0.94117 0.91210 0.91251 0.94170 0.89477 0.84787 0.84320 0.84365 0.84204 0.85535 0.93370 0.89132 0.89849 0.90842 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.04 1.68 9.16 127.69 1.17 2.85 16 2 N -0.54 -23.48 4.62 -927.03 -4.28 -27.76 16 3 C 0.21 11.21 4.72 85.56 0.40 11.62 16 4 C -0.53 -30.35 8.52 25.60 0.22 -30.14 16 5 H 0.06 3.48 7.10 -2.91 -0.02 3.46 16 6 C 0.00 0.13 5.46 84.65 0.46 0.59 16 7 N -0.93 -56.63 13.29 21.45 0.28 -56.34 16 8 Si 0.97 44.77 29.54 68.60 2.03 46.80 16 9 H -0.27 -12.03 7.11 99.48 0.71 -11.32 16 10 H -0.28 -12.64 7.11 99.48 0.71 -11.93 16 11 H -0.27 -11.93 7.11 99.48 0.71 -11.22 16 12 C 0.02 0.82 4.62 86.30 0.40 1.22 16 13 C 0.13 3.48 3.08 30.59 0.09 3.57 16 14 H 0.09 2.74 6.47 -2.39 -0.02 2.73 16 15 O -0.56 -15.87 12.72 -148.98 -1.90 -17.77 16 16 C 0.04 0.85 5.16 86.30 0.45 1.30 16 17 N -0.68 -12.94 6.31 -491.17 -3.10 -16.04 16 18 C 0.09 1.42 2.56 44.99 0.12 1.53 16 19 C -0.10 -1.67 5.59 30.65 0.17 -1.50 16 20 C 0.06 0.98 5.26 86.33 0.45 1.43 16 21 N -0.50 -7.93 4.70 -695.38 -3.27 -11.20 16 22 C 0.10 1.62 5.64 38.22 0.22 1.84 16 23 C -0.19 -2.69 8.82 22.40 0.20 -2.49 16 24 C -0.10 -1.27 10.04 22.25 0.22 -1.05 16 25 C -0.16 -1.88 10.04 22.29 0.22 -1.66 16 26 C -0.10 -1.31 10.04 22.25 0.22 -1.09 16 27 C -0.16 -2.41 9.16 22.40 0.21 -2.21 16 28 C 0.06 0.76 4.15 86.33 0.36 1.12 16 29 C -0.11 -1.56 5.36 30.65 0.16 -1.39 16 30 H 0.01 0.35 8.14 -2.39 -0.02 0.33 16 31 H 0.08 2.60 6.30 -2.39 -0.02 2.59 16 32 H 0.05 2.35 6.86 -2.39 -0.02 2.34 16 33 H 0.00 0.25 7.93 -2.38 -0.02 0.23 16 34 H -0.04 -2.33 8.12 -2.39 -0.02 -2.35 16 35 H 0.26 15.07 8.31 -92.71 -0.77 14.30 16 36 H 0.03 1.05 8.12 -2.39 -0.02 1.03 16 37 H 0.07 2.29 7.93 -2.39 -0.02 2.27 16 38 H 0.38 8.66 9.04 -74.06 -0.67 7.99 16 39 H 0.08 1.64 7.51 -2.39 -0.02 1.62 16 40 H 0.04 0.78 8.06 -2.39 -0.02 0.76 16 41 H 0.35 6.58 7.92 -89.70 -0.71 5.87 16 42 H 0.04 0.67 7.80 -2.39 -0.02 0.65 16 43 H 0.07 1.33 8.14 -2.39 -0.02 1.31 16 44 H 0.07 1.15 7.54 -2.39 -0.02 1.13 16 45 H 0.04 0.62 8.14 -2.39 -0.02 0.60 16 46 H 0.09 1.23 6.71 -2.39 -0.02 1.21 16 47 H 0.13 1.59 5.81 -2.91 -0.02 1.57 16 48 H 0.14 1.12 8.06 -2.91 -0.02 1.10 16 49 H 0.14 1.04 8.06 -2.91 -0.02 1.02 16 50 H 0.14 1.19 8.06 -2.91 -0.02 1.17 16 51 H 0.13 1.77 7.15 -2.91 -0.02 1.75 16 52 H 0.05 0.61 7.72 -2.39 -0.02 0.60 16 53 H 0.09 1.09 7.00 -2.38 -0.02 1.08 16 54 H 0.08 0.95 8.14 -2.39 -0.02 0.94 16 55 H 0.07 1.19 8.14 -2.39 -0.02 1.17 16 Total: -1.00 -67.81 424.16 -5.00 -72.80 By element: Atomic # 1 Polarization: 24.47 SS G_CDS: -0.50 Total: 23.97 kcal Atomic # 6 Polarization: -20.20 SS G_CDS: 5.74 Total: -14.45 kcal Atomic # 7 Polarization: -100.98 SS G_CDS: -10.37 Total: -111.34 kcal Atomic # 8 Polarization: -15.87 SS G_CDS: -1.90 Total: -17.77 kcal Atomic # 14 Polarization: 44.77 SS G_CDS: 2.03 Total: 46.80 kcal Total: -67.81 -5.00 -72.80 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000563346872.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 39.300 kcal (2) G-P(sol) polarization free energy of solvation -67.806 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.506 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -4.996 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.803 kcal (6) G-S(sol) free energy of system = (1) + (5) -33.502 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.21 seconds