Wall clock time and date at job start Wed Apr 1 2020 04:47:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.50706 * 1 3 3 C 1.47097 * 119.99955 * 2 1 4 4 O 1.21613 * 120.00233 * 77.79902 * 3 2 1 5 5 N 1.34779 * 119.99599 * 257.79264 * 3 2 1 6 6 C 1.47016 * 125.64852 * 5.14134 * 5 3 2 7 7 C 1.54322 * 107.27010 * 181.09141 * 6 5 3 8 8 C 1.55159 * 102.94403 * 22.18935 * 7 6 5 9 9 H 1.09001 * 111.03493 * 82.58961 * 8 7 6 10 10 N 1.46899 * 111.00755 * 206.42286 * 8 7 6 11 11 C 1.46900 * 111.00269 * 294.89146 * 10 8 7 12 12 C 1.53235 * 109.34012 * 172.74234 * 11 10 8 13 13 N 1.47081 * 108.52169 * 53.83179 * 12 11 10 14 14 C 1.36935 * 120.88285 * 128.83302 * 13 12 11 15 15 H 1.07997 * 120.00000 * 329.59090 * 14 13 12 16 16 C 1.38816 * 119.99881 * 149.58887 * 14 13 12 17 17 N 1.31623 * 119.99708 * 163.24277 * 16 14 13 18 18 Si 1.86795 * 119.99986 * 343.24395 * 16 14 13 19 19 H 1.48501 * 109.47147 * 89.12151 * 18 16 14 20 20 H 1.48500 * 109.47245 * 209.11987 * 18 16 14 21 21 H 1.48498 * 109.47326 * 329.12139 * 18 16 14 22 22 C 1.47081 * 118.23749 * 308.81295 * 13 12 11 23 23 C 1.46894 * 111.00094 * 170.58706 * 10 8 7 24 24 C 1.47422 * 125.64545 * 185.17302 * 5 3 2 25 25 C 1.32994 * 119.99515 * 179.97438 * 2 1 3 26 26 C 1.51453 * 126.33853 * 179.68809 * 25 2 1 27 27 C 1.54275 * 106.85373 * 180.24417 * 26 25 2 28 28 C 1.54991 * 103.65815 * 23.48398 * 27 26 25 29 29 C 1.51839 * 126.34452 * 0.02562 * 25 2 1 30 30 H 1.08996 * 109.46853 * 95.14283 * 1 2 3 31 31 H 1.08996 * 109.46909 * 215.14420 * 1 2 3 32 32 H 1.08999 * 109.46938 * 335.14371 * 1 2 3 33 33 H 1.09004 * 109.88176 * 300.50639 * 6 5 3 34 34 H 1.09005 * 109.88568 * 61.52030 * 6 5 3 35 35 H 1.09006 * 110.72355 * 263.82996 * 7 6 5 36 36 H 1.08995 * 110.72332 * 140.55357 * 7 6 5 37 37 H 1.09005 * 109.49155 * 292.70422 * 11 10 8 38 38 H 1.09004 * 109.49094 * 52.78511 * 11 10 8 39 39 H 1.08995 * 109.63233 * 294.11799 * 12 11 10 40 40 H 1.09005 * 109.78922 * 173.63275 * 12 11 10 41 41 H 0.96995 * 119.99640 * 179.97438 * 17 16 14 42 42 H 1.09004 * 109.62568 * 291.47741 * 22 13 12 43 43 H 1.08999 * 109.79011 * 170.98967 * 22 13 12 44 44 H 1.09003 * 109.49450 * 307.21646 * 23 10 8 45 45 H 1.08995 * 109.49412 * 67.29341 * 23 10 8 46 46 H 1.09007 * 110.36608 * 37.00660 * 24 5 3 47 47 H 1.08996 * 110.46617 * 274.72558 * 24 5 3 48 48 H 1.08998 * 109.98344 * 299.73622 * 26 25 2 49 49 H 1.09003 * 109.98505 * 61.03400 * 26 25 2 50 50 H 1.08993 * 110.79685 * 264.86456 * 27 26 25 51 51 H 1.08993 * 110.55799 * 141.98753 * 27 26 25 52 52 H 1.09003 * 110.83334 * 204.48844 * 28 27 26 53 53 H 1.09004 * 111.00340 * 80.98797 * 28 27 26 54 54 H 1.08993 * 110.44676 * 274.92123 * 29 25 2 55 55 H 1.09006 * 110.44262 * 37.32875 * 29 25 2 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5071 0.0000 0.0000 3 6 2.2425 1.2739 0.0000 4 8 2.3538 1.9118 1.0294 5 7 2.7932 1.7340 -1.1409 6 6 2.6463 1.1236 -2.4702 7 6 3.4697 1.9754 -3.4591 8 6 4.4915 2.6897 -2.5354 9 1 5.3427 2.0437 -2.3203 10 7 4.9343 3.9609 -3.1235 11 6 5.6847 3.7332 -4.3657 12 6 5.9704 5.0792 -5.0399 13 7 6.6335 5.9587 -4.0651 14 6 7.8001 6.6032 -4.3796 15 1 8.4952 6.1538 -5.0733 16 6 8.0892 7.8341 -3.8066 17 7 9.3197 8.3004 -3.8350 18 14 6.7319 8.8285 -2.9953 19 1 6.6254 8.4456 -1.5645 20 1 7.0493 10.2755 -3.0982 21 1 5.4419 8.5549 -3.6782 22 6 6.0101 6.1278 -2.7438 23 6 5.7227 4.7404 -2.1599 24 6 3.6430 2.9325 -1.2623 25 6 2.1719 -1.1518 0.0005 26 6 3.6772 -1.3192 -0.0061 27 6 3.9586 -2.8360 -0.0089 28 6 2.6646 -3.4472 -0.6042 29 6 1.5626 -2.5426 0.0006 30 1 -0.3633 -0.0921 -1.0235 31 1 -0.3633 -0.8403 0.5915 32 1 -0.3633 0.9325 0.4320 33 1 3.0279 0.1026 -2.4535 34 1 1.5965 1.1220 -2.7636 35 1 2.8336 2.7019 -3.9648 36 1 3.9816 1.3403 -4.1819 37 1 6.6263 3.2344 -4.1356 38 1 5.0959 3.1079 -5.0369 39 1 5.0338 5.5325 -5.3642 40 1 6.6222 4.9298 -5.9008 41 1 9.5216 9.1607 -3.4350 42 1 5.0771 6.6819 -2.8473 43 1 6.6866 6.6701 -2.0832 44 1 5.1616 4.8456 -1.2314 45 1 6.6637 4.2277 -1.9605 46 1 4.2884 3.0299 -0.3892 47 1 3.0287 3.8250 -1.3805 48 1 4.0993 -0.8582 -0.8990 49 1 4.1065 -0.8644 0.8867 50 1 4.1231 -3.2010 1.0049 51 1 4.8163 -3.0650 -0.6412 52 1 2.5393 -4.4804 -0.2803 53 1 2.6661 -3.3812 -1.6922 54 1 1.3291 -2.8559 1.0181 55 1 0.6661 -2.5655 -0.6191 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001052011093.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:47:36 Heat of formation + Delta-G solvation = -11.856176 kcal Electronic energy + Delta-G solvation = -31873.450545 eV Core-core repulsion = 27909.922737 eV Total energy + Delta-G solvation = -3963.527808 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.35 seconds Orbital eigenvalues (eV) -41.49378 -40.13814 -38.95564 -38.21673 -35.90761 -34.47475 -33.63572 -32.25375 -31.60651 -30.13724 -29.74658 -28.52819 -27.91120 -25.74227 -24.97497 -24.45898 -23.39074 -21.90897 -21.61754 -21.03542 -20.99460 -19.09474 -18.90523 -17.81256 -17.66537 -17.14544 -16.66183 -16.50598 -16.20162 -15.91939 -15.81773 -15.53546 -15.45076 -14.98274 -14.68549 -14.45950 -14.32611 -14.26607 -14.21131 -13.97460 -13.85885 -13.69188 -13.38809 -13.32443 -13.19347 -12.84152 -12.77872 -12.64065 -12.44925 -12.22035 -12.18023 -12.12431 -12.06183 -11.88192 -11.84984 -11.70939 -11.55049 -11.48394 -11.44954 -10.97210 -10.74806 -9.80707 -9.70017 -9.44637 -8.87372 -8.19345 -5.55338 0.71412 1.28265 1.38858 1.47257 1.48421 1.88929 2.38983 2.82214 3.06874 3.22334 3.33920 3.44063 3.62938 3.73208 3.83631 3.99915 4.07308 4.09733 4.14504 4.18918 4.25363 4.30523 4.37086 4.40229 4.44316 4.44643 4.54331 4.57841 4.67219 4.70764 4.74747 4.76146 4.78361 4.78645 4.83755 4.86661 4.88287 4.93984 4.99834 5.01621 5.03669 5.08352 5.12944 5.16014 5.20822 5.23740 5.29791 5.40167 5.45251 5.68659 5.83593 6.00518 6.07082 6.16978 6.39585 6.88605 6.98366 7.58115 8.02431 9.00618 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.019891 B = 0.002349 C = 0.002269 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1407.326180 B =11917.224258 C =12338.541201 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.094 4.094 2 C -0.178 4.178 3 C 0.572 3.428 4 O -0.593 6.593 5 N -0.609 5.609 6 C 0.106 3.894 7 C -0.112 4.112 8 C 0.075 3.925 9 H 0.053 0.947 10 N -0.524 5.524 11 C 0.055 3.945 12 C 0.145 3.855 13 N -0.624 5.624 14 C -0.247 4.247 15 H 0.054 0.946 16 C -0.034 4.034 17 N -0.959 5.959 18 Si 0.949 3.051 19 H -0.275 1.275 20 H -0.310 1.310 21 H -0.263 1.263 22 C 0.126 3.874 23 C 0.052 3.948 24 C 0.114 3.886 25 C -0.071 4.071 26 C -0.109 4.109 27 C -0.121 4.121 28 C -0.117 4.117 29 C -0.090 4.090 30 H 0.092 0.908 31 H 0.087 0.913 32 H 0.049 0.951 33 H 0.084 0.916 34 H 0.089 0.911 35 H 0.091 0.909 36 H 0.106 0.894 37 H 0.022 0.978 38 H 0.110 0.890 39 H 0.038 0.962 40 H 0.064 0.936 41 H 0.262 0.738 42 H 0.034 0.966 43 H 0.051 0.949 44 H 0.082 0.918 45 H 0.024 0.976 46 H 0.054 0.946 47 H 0.070 0.930 48 H 0.075 0.925 49 H 0.051 0.949 50 H 0.069 0.931 51 H 0.076 0.924 52 H 0.086 0.914 53 H 0.078 0.922 54 H 0.088 0.912 55 H 0.094 0.906 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -20.541 -28.336 3.280 35.151 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.151 4.151 2 C -0.181 4.181 3 C 0.363 3.637 4 O -0.474 6.474 5 N -0.342 5.342 6 C -0.016 4.016 7 C -0.150 4.150 8 C -0.035 4.035 9 H 0.071 0.929 10 N -0.249 5.249 11 C -0.073 4.073 12 C 0.021 3.979 13 N -0.349 5.349 14 C -0.376 4.376 15 H 0.071 0.929 16 C -0.229 4.229 17 N -0.605 5.605 18 Si 0.778 3.222 19 H -0.202 1.202 20 H -0.239 1.239 21 H -0.187 1.187 22 C 0.001 3.999 23 C -0.077 4.077 24 C -0.009 4.009 25 C -0.072 4.072 26 C -0.146 4.146 27 C -0.158 4.158 28 C -0.154 4.154 29 C -0.127 4.127 30 H 0.110 0.890 31 H 0.106 0.894 32 H 0.068 0.932 33 H 0.103 0.897 34 H 0.108 0.892 35 H 0.110 0.890 36 H 0.124 0.876 37 H 0.041 0.959 38 H 0.128 0.872 39 H 0.056 0.944 40 H 0.083 0.917 41 H 0.071 0.929 42 H 0.052 0.948 43 H 0.069 0.931 44 H 0.100 0.900 45 H 0.042 0.958 46 H 0.073 0.927 47 H 0.088 0.912 48 H 0.093 0.907 49 H 0.069 0.931 50 H 0.088 0.912 51 H 0.095 0.905 52 H 0.104 0.896 53 H 0.097 0.903 54 H 0.106 0.894 55 H 0.113 0.887 Dipole moment (debyes) X Y Z Total from point charges -20.828 -27.650 3.763 34.821 hybrid contribution 1.139 1.193 0.981 1.920 sum -19.689 -26.456 4.744 33.318 Atomic orbital electron populations 1.20608 0.87776 1.02970 1.03701 1.20657 0.97575 0.89932 1.09892 1.18700 0.77770 0.85804 0.81473 1.90789 1.62251 1.60641 1.33727 1.48524 1.49484 1.27525 1.08627 1.22252 1.01879 0.97566 0.79909 1.22715 0.96588 0.98840 0.96843 1.22715 0.96538 0.90207 0.94006 0.92897 1.61935 1.40856 1.16979 1.05107 1.22507 0.95842 0.97572 0.91408 1.21226 0.95737 0.89546 0.91434 1.44545 1.25458 1.54425 1.10512 1.18856 0.94538 0.99003 1.25238 0.92866 1.25977 0.98026 0.97951 1.00934 1.69927 1.19617 1.21090 1.49858 0.85895 0.80813 0.76791 0.78670 1.20200 1.23894 1.18732 1.21427 0.95817 0.95786 0.86887 1.22428 0.95451 0.94645 0.95226 1.22106 0.92870 0.88497 0.97416 1.22697 0.95797 0.94540 0.94209 1.21365 0.92878 0.98871 1.01445 1.22356 0.99123 0.92547 1.01825 1.22514 0.92921 0.99191 1.00802 1.21540 0.99202 0.89363 1.02546 0.89003 0.89415 0.93203 0.89743 0.89240 0.88998 0.87551 0.95926 0.87156 0.94382 0.91747 0.92940 0.94791 0.93112 0.90020 0.95755 0.92718 0.91163 0.90665 0.93075 0.91239 0.90530 0.89557 0.90312 0.89384 0.88743 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.09 -1.23 9.48 71.24 0.67 -0.55 16 2 C -0.18 -3.25 4.93 -18.70 -0.09 -3.35 16 3 C 0.57 15.03 6.58 86.57 0.57 15.60 16 4 O -0.59 -21.55 17.40 -4.07 -0.07 -21.62 16 5 N -0.61 -13.57 3.33 -816.07 -2.71 -16.28 16 6 C 0.11 1.48 6.47 86.73 0.56 2.04 16 7 C -0.11 -1.65 5.49 31.78 0.17 -1.48 16 8 C 0.07 1.68 2.72 46.31 0.13 1.81 16 9 H 0.05 1.24 8.14 -2.39 -0.02 1.22 16 10 N -0.52 -15.16 4.53 -861.90 -3.90 -19.06 16 11 C 0.06 1.59 5.50 86.38 0.48 2.07 16 12 C 0.15 5.41 6.69 86.35 0.58 5.99 16 13 N -0.62 -29.62 2.78 -698.12 -1.94 -31.56 16 14 C -0.25 -14.13 10.07 84.03 0.85 -13.28 16 15 H 0.05 3.31 8.06 -2.91 -0.02 3.29 16 16 C -0.03 -2.03 5.29 84.86 0.45 -1.58 16 17 N -0.96 -61.10 13.97 21.65 0.30 -60.80 16 18 Si 0.95 47.97 24.28 68.60 1.67 49.64 16 19 H -0.28 -13.24 6.53 99.48 0.65 -12.59 16 20 H -0.31 -15.87 7.11 99.48 0.71 -15.16 16 21 H -0.26 -12.83 6.64 99.48 0.66 -12.17 16 22 C 0.13 5.51 4.34 86.35 0.37 5.88 16 23 C 0.05 1.83 5.45 86.39 0.47 2.30 16 24 C 0.11 2.93 5.14 86.86 0.45 3.38 16 25 C -0.07 -1.04 6.06 -17.01 -0.10 -1.15 16 26 C -0.11 -1.68 5.90 30.52 0.18 -1.50 16 27 C -0.12 -1.24 6.88 31.71 0.22 -1.03 16 28 C -0.12 -0.79 6.94 31.92 0.22 -0.56 16 29 C -0.09 -0.74 5.72 30.85 0.18 -0.56 16 30 H 0.09 0.79 8.14 -2.39 -0.02 0.77 16 31 H 0.09 0.84 7.48 -2.39 -0.02 0.82 16 32 H 0.05 0.83 8.08 -2.39 -0.02 0.81 16 33 H 0.08 0.94 7.02 -2.39 -0.02 0.92 16 34 H 0.09 0.98 8.14 -2.38 -0.02 0.96 16 35 H 0.09 1.42 8.14 -2.38 -0.02 1.40 16 36 H 0.11 1.11 7.95 -2.39 -0.02 1.10 16 37 H 0.02 0.71 8.14 -2.38 -0.02 0.69 16 38 H 0.11 2.30 6.99 -2.38 -0.02 2.28 16 39 H 0.04 1.38 8.14 -2.39 -0.02 1.36 16 40 H 0.06 2.38 7.95 -2.38 -0.02 2.37 16 41 H 0.26 15.88 8.31 -92.71 -0.77 15.11 16 42 H 0.03 1.49 6.85 -2.38 -0.02 1.47 16 43 H 0.05 2.45 4.80 -2.39 -0.01 2.44 16 44 H 0.08 2.63 6.69 -2.39 -0.02 2.61 16 45 H 0.02 0.91 8.14 -2.39 -0.02 0.89 16 46 H 0.05 1.62 7.80 -2.38 -0.02 1.60 16 47 H 0.07 1.96 8.14 -2.39 -0.02 1.94 16 48 H 0.07 1.18 7.08 -2.39 -0.02 1.17 16 49 H 0.05 1.04 8.14 -2.39 -0.02 1.02 16 50 H 0.07 0.72 8.14 -2.39 -0.02 0.70 16 51 H 0.08 0.70 8.14 -2.39 -0.02 0.68 16 52 H 0.09 0.38 8.14 -2.39 -0.02 0.36 16 53 H 0.08 0.45 8.14 -2.38 -0.02 0.43 16 54 H 0.09 0.69 8.14 -2.39 -0.02 0.67 16 55 H 0.09 0.49 7.77 -2.38 -0.02 0.47 16 Total: -1.00 -76.48 413.02 0.43 -76.05 By element: Atomic # 1 Polarization: 8.87 SS G_CDS: 0.74 Total: 9.61 kcal Atomic # 6 Polarization: 7.68 SS G_CDS: 6.35 Total: 14.03 kcal Atomic # 7 Polarization: -119.45 SS G_CDS: -8.25 Total: -127.70 kcal Atomic # 8 Polarization: -21.55 SS G_CDS: -0.07 Total: -21.62 kcal Atomic # 14 Polarization: 47.97 SS G_CDS: 1.67 Total: 49.64 kcal Total: -76.48 0.43 -76.05 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001052011093.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 64.192 kcal (2) G-P(sol) polarization free energy of solvation -76.482 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -12.290 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.434 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -76.048 kcal (6) G-S(sol) free energy of system = (1) + (5) -11.856 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.35 seconds