Wall clock time and date at job start Wed Apr 1 2020 04:51:53 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.17403 * 1 3 3 C 1.47196 * 179.97438 * 2 1 4 4 C 1.53005 * 109.47221 * 234.07100 * 3 2 1 5 5 C 1.50710 * 109.46822 * 60.00414 * 4 3 2 6 6 O 1.21276 * 119.99997 * 120.00052 * 5 4 3 7 7 N 1.34777 * 119.99438 * 299.99869 * 5 4 3 8 8 C 1.46505 * 119.99466 * 180.02562 * 7 5 4 9 9 C 1.53004 * 109.46664 * 180.02562 * 8 7 5 10 10 N 1.46900 * 109.46601 * 179.97438 * 9 8 7 11 11 C 1.46898 * 111.00268 * 294.29917 * 10 9 8 12 12 C 1.53238 * 109.34000 * 172.74898 * 11 10 9 13 13 N 1.47074 * 108.52725 * 53.82909 * 12 11 10 14 14 C 1.36936 * 120.88641 * 128.83097 * 13 12 11 15 15 H 1.07997 * 120.00281 * 206.56381 * 14 13 12 16 16 C 1.38815 * 119.99648 * 26.56556 * 14 13 12 17 17 N 1.31621 * 119.99728 * 17.02913 * 16 14 13 18 18 Si 1.86797 * 120.00083 * 197.02745 * 16 14 13 19 19 H 1.48499 * 109.46972 * 359.97438 * 18 16 14 20 20 H 1.48499 * 109.47175 * 120.00060 * 18 16 14 21 21 H 1.48503 * 109.46808 * 239.99906 * 18 16 14 22 22 C 1.47087 * 118.23564 * 308.82030 * 13 12 11 23 23 C 1.46897 * 110.99959 * 169.99616 * 10 9 8 24 24 C 1.52992 * 109.47152 * 300.00544 * 4 3 2 25 25 C 1.53006 * 109.46975 * 179.97438 * 24 4 3 26 26 C 1.53001 * 109.47057 * 59.99992 * 25 24 4 27 27 C 1.52997 * 109.46735 * 299.99827 * 26 25 24 28 28 C 1.52997 * 109.47374 * 179.97438 * 4 3 2 29 29 H 4.44646 * 5.63368 * 179.97438 * 4 1 2 30 30 H 1.09005 * 109.47299 * 114.07713 * 3 2 1 31 31 H 1.09004 * 109.47579 * 354.07171 * 3 2 1 32 32 H 0.97000 * 120.00307 * 0.02562 * 7 5 4 33 33 H 1.09005 * 109.47027 * 299.99766 * 8 7 5 34 34 H 1.08997 * 109.47386 * 59.99956 * 8 7 5 35 35 H 1.08992 * 109.47151 * 299.99271 * 9 8 7 36 36 H 1.08999 * 109.47324 * 60.00522 * 9 8 7 37 37 H 1.08995 * 109.49626 * 292.70797 * 11 10 9 38 38 H 1.09000 * 109.49239 * 52.78993 * 11 10 9 39 39 H 1.09005 * 109.62823 * 294.11621 * 12 11 10 40 40 H 1.09003 * 109.62832 * 173.54106 * 12 11 10 41 41 H 0.97004 * 120.00049 * 180.02562 * 17 16 14 42 42 H 1.08997 * 109.62484 * 291.46654 * 22 13 12 43 43 H 1.09003 * 109.78900 * 170.98535 * 22 13 12 44 44 H 1.09000 * 109.49549 * 307.21630 * 23 10 9 45 45 H 1.09004 * 109.49402 * 67.29505 * 23 10 9 46 46 H 1.09005 * 109.47074 * 299.99208 * 24 4 3 47 47 H 1.09001 * 109.47773 * 59.99479 * 24 4 3 48 48 H 1.08996 * 109.46937 * 299.99699 * 25 24 4 49 49 H 1.09004 * 109.46725 * 179.97438 * 25 24 4 50 50 H 1.08997 * 109.47056 * 180.02562 * 26 25 24 51 51 H 1.08997 * 109.47078 * 59.99704 * 26 25 24 52 52 H 1.08997 * 109.47237 * 299.99779 * 27 26 25 53 53 H 1.09005 * 109.46979 * 179.97438 * 27 26 25 54 54 H 1.09005 * 109.47127 * 300.00496 * 28 4 3 55 55 H 1.08997 * 109.46742 * 60.00166 * 28 4 3 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.1740 0.0000 0.0000 3 6 2.6460 0.0007 0.0000 4 6 3.1557 0.8473 1.1681 5 6 2.6536 0.2675 2.4654 6 8 3.4419 -0.1082 3.3070 7 7 1.3286 0.1664 2.6902 8 6 0.8405 -0.3968 3.9515 9 6 -0.6895 -0.3981 3.9512 10 7 -1.1789 -0.9634 5.2157 11 6 -0.8210 -2.3835 5.3310 12 6 -1.1866 -2.8868 6.7314 13 7 -2.6027 -2.5800 6.9834 14 6 -3.4656 -3.5502 7.4183 15 1 -4.5206 -3.4714 7.2014 16 6 -2.9842 -4.6352 8.1381 17 7 -1.7907 -4.5811 8.6905 18 14 -4.0302 -6.1717 8.3229 19 1 -5.3209 -5.9801 7.6141 20 1 -3.3118 -7.3328 7.7389 21 1 -4.2896 -6.4236 9.7633 22 6 -3.0675 -1.2031 6.7561 23 6 -2.6279 -0.7661 5.3547 24 6 2.6449 2.2818 1.0192 25 6 3.1541 3.1283 2.1876 26 6 4.6841 3.1291 2.1881 27 6 5.1947 1.6946 2.3371 28 6 4.6856 0.8475 1.1685 29 1 -1.0501 0.0000 -0.0003 30 1 3.0092 0.4201 -0.9383 31 1 3.0099 -1.0214 0.1061 32 1 0.6981 0.4665 2.0169 33 1 1.2044 -1.4188 4.0580 34 1 1.2035 0.2067 4.7835 35 1 -1.0537 0.6236 3.8445 36 1 -1.0521 -1.0020 3.1193 37 1 -1.3679 -2.9583 4.5837 38 1 0.2504 -2.5028 5.1698 39 1 -0.5656 -2.3860 7.4742 40 1 -1.0301 -3.9642 6.7857 41 1 -1.4541 -5.3394 9.1932 42 1 -2.6275 -0.5405 7.5012 43 1 -4.1545 -1.1640 6.8277 44 1 -2.8670 0.2876 5.2106 45 1 -3.1497 -1.3634 4.6070 46 1 3.0081 2.7012 0.0809 47 1 1.5549 2.2814 1.0191 48 1 2.7906 2.7088 3.1257 49 1 2.7906 4.1504 2.0812 50 1 5.0468 3.7318 3.0208 51 1 5.0475 3.5486 1.2501 52 1 4.8313 1.2751 3.2752 53 1 6.2848 1.6950 2.3370 54 1 5.0491 -0.1746 1.2748 55 1 5.0491 1.2666 0.2302 RHF calculation, no. of doubly occupied orbitals= 67 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC001713079142.mol2 55 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 04:51:53 Heat of formation + Delta-G solvation = 15.437413 kcal Electronic energy + Delta-G solvation = -31857.028797 eV Core-core repulsion = 27894.684528 eV Total energy + Delta-G solvation = -3962.344269 eV No. of doubly occupied orbitals = 67 Molecular weight (most abundant/longest-lived isotopes) = 347.231 amu Computer time = 1.18 seconds Orbital eigenvalues (eV) -41.97623 -39.87019 -38.38949 -36.94886 -36.04501 -34.93942 -33.26917 -32.47478 -31.68581 -31.65434 -30.19578 -27.82999 -27.63871 -25.22821 -24.37360 -23.89418 -23.60108 -22.54358 -21.87187 -20.89641 -20.35217 -18.96074 -18.74815 -17.50121 -17.49037 -16.88105 -16.65920 -16.26585 -16.07424 -15.79258 -15.46752 -15.37738 -15.28459 -15.21715 -14.97866 -14.78193 -14.66869 -14.58231 -14.18787 -13.96918 -13.34243 -13.22398 -13.14874 -13.03586 -12.98069 -12.87899 -12.83817 -12.66367 -12.58989 -12.23562 -12.06275 -11.96698 -11.88698 -11.68612 -11.58836 -11.46703 -11.40609 -11.17293 -10.88297 -10.86554 -10.61844 -10.50834 -10.03016 -9.33834 -8.71261 -7.89317 -5.34407 1.44716 1.45941 1.57001 1.57101 1.85792 1.90309 2.08310 2.49270 3.04745 3.26330 3.34247 3.61432 3.65440 3.69553 3.80546 3.80973 4.00539 4.04934 4.22678 4.26501 4.31089 4.31625 4.40165 4.41582 4.51029 4.52256 4.61436 4.62299 4.67561 4.69085 4.74201 4.79209 4.81409 4.87848 4.93364 4.95553 5.00691 5.06811 5.10683 5.15398 5.17598 5.26387 5.27929 5.34069 5.35764 5.38759 5.44676 5.59586 5.64265 5.68966 6.10592 6.18672 6.35177 6.53944 6.63413 7.10704 7.27526 7.81626 8.36203 9.17866 Molecular weight = 347.23amu Principal moments of inertia in cm(-1) A = 0.018634 B = 0.002202 C = 0.002160 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1502.299173 B =12715.123883 C =12960.470861 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.208 4.208 3 C -0.005 4.005 4 C -0.063 4.063 5 C 0.516 3.484 6 O -0.574 6.574 7 N -0.719 5.719 8 C 0.127 3.873 9 C 0.057 3.943 10 N -0.541 5.541 11 C 0.051 3.949 12 C 0.187 3.813 13 N -0.614 5.614 14 C -0.261 4.261 15 H 0.071 0.929 16 C -0.055 4.055 17 N -0.938 5.938 18 Si 0.970 3.030 19 H -0.264 1.264 20 H -0.291 1.291 21 H -0.292 1.292 22 C 0.142 3.858 23 C 0.058 3.942 24 C -0.102 4.102 25 C -0.125 4.125 26 C -0.115 4.115 27 C -0.137 4.137 28 C -0.091 4.091 29 H 0.240 0.760 30 H 0.131 0.869 31 H 0.087 0.913 32 H 0.409 0.591 33 H 0.047 0.953 34 H 0.056 0.944 35 H 0.099 0.901 36 H 0.044 0.956 37 H 0.023 0.977 38 H 0.071 0.929 39 H -0.005 1.005 40 H 0.055 0.945 41 H 0.250 0.750 42 H 0.014 0.986 43 H 0.065 0.935 44 H 0.101 0.899 45 H 0.030 0.970 46 H 0.104 0.896 47 H 0.067 0.933 48 H 0.032 0.968 49 H 0.080 0.920 50 H 0.055 0.945 51 H 0.083 0.917 52 H 0.055 0.945 53 H 0.065 0.935 54 H 0.057 0.943 55 H 0.102 0.898 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.328 17.271 -24.451 31.354 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.217 4.217 2 C -0.208 4.208 3 C -0.041 4.041 4 C -0.066 4.066 5 C 0.303 3.697 6 O -0.454 6.454 7 N -0.375 5.375 8 C 0.003 3.997 9 C -0.071 4.071 10 N -0.266 5.266 11 C -0.078 4.078 12 C 0.061 3.939 13 N -0.338 5.338 14 C -0.392 4.392 15 H 0.089 0.911 16 C -0.250 4.250 17 N -0.584 5.584 18 Si 0.798 3.202 19 H -0.188 1.188 20 H -0.217 1.217 21 H -0.219 1.219 22 C 0.016 3.984 23 C -0.071 4.071 24 C -0.139 4.139 25 C -0.162 4.162 26 C -0.152 4.152 27 C -0.175 4.175 28 C -0.129 4.129 29 H 0.257 0.743 30 H 0.149 0.851 31 H 0.105 0.895 32 H 0.251 0.749 33 H 0.065 0.935 34 H 0.074 0.926 35 H 0.117 0.883 36 H 0.063 0.937 37 H 0.041 0.959 38 H 0.090 0.910 39 H 0.013 0.987 40 H 0.074 0.926 41 H 0.059 0.941 42 H 0.032 0.968 43 H 0.083 0.917 44 H 0.119 0.881 45 H 0.048 0.952 46 H 0.122 0.878 47 H 0.086 0.914 48 H 0.051 0.949 49 H 0.099 0.901 50 H 0.074 0.926 51 H 0.102 0.898 52 H 0.073 0.927 53 H 0.084 0.916 54 H 0.076 0.924 55 H 0.120 0.880 Dipole moment (debyes) X Y Z Total from point charges 10.132 17.146 -23.365 30.701 hybrid contribution -1.129 -1.641 0.240 2.006 sum 9.003 15.505 -23.125 29.261 Atomic orbital electron populations 1.25636 0.96817 0.99787 0.99508 1.23271 0.95059 1.01559 1.00902 1.18913 0.84789 1.01152 0.99262 1.20921 0.98060 0.97145 0.90477 1.21136 0.81813 0.77380 0.89328 1.90639 1.55934 1.50314 1.48472 1.46360 1.07708 1.63827 1.19634 1.21097 0.94220 0.98070 0.86355 1.22149 0.93188 1.01225 0.90563 1.61753 1.14970 1.16014 1.33900 1.22597 0.99358 0.87806 0.98089 1.20574 0.83982 0.98334 0.91044 1.44421 1.06489 1.05573 1.77361 1.19589 0.91348 1.00894 1.27319 0.91122 1.25851 0.98598 1.03164 0.97423 1.70213 1.20419 1.30827 1.36942 0.85171 0.78559 0.79480 0.77022 1.18827 1.21747 1.21921 1.21162 0.97644 0.85243 0.94328 1.22485 0.86257 1.01189 0.97195 1.21657 1.00658 0.91170 1.00422 1.21588 0.96557 1.00594 0.97506 1.21524 0.94941 0.96190 1.02552 1.21766 1.00443 0.95697 0.99552 1.21405 0.90741 1.00659 1.00058 0.74329 0.85079 0.89451 0.74947 0.93503 0.92580 0.88318 0.93742 0.95858 0.91041 0.98735 0.92619 0.94127 0.96777 0.91676 0.88133 0.95194 0.87763 0.91405 0.94950 0.90123 0.92594 0.89832 0.92681 0.91588 0.92434 0.87970 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 15. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.20 -2.48 17.63 74.32 1.31 -1.17 16 2 C -0.21 -2.91 9.76 31.12 0.30 -2.61 16 3 C 0.00 -0.06 4.78 28.79 0.14 0.08 16 4 C -0.06 -0.97 0.50 -52.93 -0.03 -1.00 16 5 C 0.52 12.72 4.93 87.66 0.43 13.15 16 6 O -0.57 -19.16 13.65 -3.02 -0.04 -19.20 16 7 N -0.72 -16.48 4.90 -463.03 -2.27 -18.75 16 8 C 0.13 3.58 5.61 86.38 0.48 4.07 16 9 C 0.06 1.45 5.08 86.30 0.44 1.89 16 10 N -0.54 -18.54 4.63 -895.27 -4.14 -22.69 16 11 C 0.05 2.05 5.46 86.38 0.47 2.52 16 12 C 0.19 9.60 5.42 86.35 0.47 10.07 16 13 N -0.61 -32.04 3.04 -698.12 -2.12 -34.16 16 14 C -0.26 -14.68 9.63 84.03 0.81 -13.87 16 15 H 0.07 3.82 7.88 -2.91 -0.02 3.80 16 16 C -0.06 -3.17 4.93 84.86 0.42 -2.75 16 17 N -0.94 -57.35 11.15 21.65 0.24 -57.11 16 18 Si 0.97 45.68 29.59 68.60 2.03 47.71 16 19 H -0.26 -11.69 7.11 99.48 0.71 -10.99 16 20 H -0.29 -13.65 7.11 99.48 0.71 -12.95 16 21 H -0.29 -13.77 7.11 99.48 0.71 -13.06 16 22 C 0.14 5.98 6.69 86.35 0.58 6.55 16 23 C 0.06 1.90 5.62 86.38 0.49 2.39 16 24 C -0.10 -1.21 4.38 30.59 0.13 -1.08 16 25 C -0.12 -1.87 5.70 30.60 0.17 -1.70 16 26 C -0.11 -1.64 5.92 30.59 0.18 -1.46 16 27 C -0.14 -2.53 5.63 30.61 0.17 -2.36 16 28 C -0.09 -1.36 4.38 30.61 0.13 -1.23 16 29 H 0.24 1.64 7.80 -4.41 -0.03 1.61 16 30 H 0.13 0.76 8.14 -2.38 -0.02 0.74 16 31 H 0.09 1.18 8.14 -2.38 -0.02 1.16 16 32 H 0.41 7.42 4.10 -92.71 -0.38 7.03 16 33 H 0.05 1.53 6.40 -2.38 -0.02 1.52 16 34 H 0.06 1.80 8.14 -2.39 -0.02 1.78 16 35 H 0.10 2.04 7.97 -2.39 -0.02 2.03 16 36 H 0.04 1.06 8.12 -2.39 -0.02 1.04 16 37 H 0.02 0.95 8.14 -2.39 -0.02 0.93 16 38 H 0.07 2.75 6.16 -2.39 -0.01 2.74 16 39 H -0.01 -0.31 8.14 -2.38 -0.02 -0.33 16 40 H 0.06 3.20 6.12 -2.39 -0.01 3.19 16 41 H 0.25 14.74 8.31 -92.71 -0.77 13.97 16 42 H 0.01 0.63 8.14 -2.39 -0.02 0.61 16 43 H 0.06 2.58 7.96 -2.39 -0.02 2.56 16 44 H 0.10 2.59 7.99 -2.39 -0.02 2.57 16 45 H 0.03 1.00 8.14 -2.38 -0.02 0.98 16 46 H 0.10 0.72 8.14 -2.38 -0.02 0.70 16 47 H 0.07 0.81 6.67 -2.39 -0.02 0.79 16 48 H 0.03 0.68 7.22 -2.39 -0.02 0.67 16 49 H 0.08 0.95 8.14 -2.38 -0.02 0.93 16 50 H 0.06 0.84 8.14 -2.39 -0.02 0.83 16 51 H 0.08 0.82 8.14 -2.39 -0.02 0.80 16 52 H 0.05 1.47 5.51 -2.39 -0.01 1.46 16 53 H 0.07 1.09 8.14 -2.38 -0.02 1.07 16 54 H 0.06 1.02 8.10 -2.38 -0.02 1.00 16 55 H 0.10 0.86 8.14 -2.39 -0.02 0.84 16 Total: -1.00 -73.96 412.49 1.27 -72.69 By element: Atomic # 1 Polarization: 19.53 SS G_CDS: 0.47 Total: 20.00 kcal Atomic # 6 Polarization: 4.39 SS G_CDS: 7.11 Total: 11.50 kcal Atomic # 7 Polarization: -124.40 SS G_CDS: -8.29 Total: -132.70 kcal Atomic # 8 Polarization: -19.16 SS G_CDS: -0.04 Total: -19.20 kcal Atomic # 14 Polarization: 45.68 SS G_CDS: 2.03 Total: 47.71 kcal Total: -73.96 1.27 -72.69 kcal The number of atoms in the molecule is 55 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC001713079142.mol2 55 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 88.126 kcal (2) G-P(sol) polarization free energy of solvation -73.962 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system 14.164 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.273 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -72.689 kcal (6) G-S(sol) free energy of system = (1) + (5) 15.437 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.19 seconds