Wall clock time and date at job start Wed Apr 1 2020 05:22:28 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00236 * 2 1 4 4 H 1.48493 * 109.47242 * 269.99857 * 3 2 1 5 5 H 1.48502 * 109.47173 * 30.00061 * 3 2 1 6 6 H 1.48502 * 109.47122 * 149.99930 * 3 2 1 7 7 C 1.37882 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99628 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00176 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00030 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.47284 * 180.02562 * 13 11 10 15 15 C 1.40044 * 111.00117 * 174.78053 * 14 13 11 16 16 C 1.39048 * 120.06049 * 83.97063 * 15 14 13 17 17 F 1.35103 * 120.03719 * 359.97438 * 16 15 14 18 18 C 1.38276 * 119.93066 * 180.02562 * 16 15 14 19 19 C 1.38502 * 120.03419 * 0.02581 * 18 16 15 20 20 F 1.35105 * 119.93906 * 179.97438 * 19 18 16 21 21 C 1.38411 * 120.11727 * 359.97438 * 19 18 16 22 22 C 1.38284 * 120.07534 * 359.67712 * 21 19 18 23 23 Br 1.89096 * 120.01842 * 180.32300 * 22 21 19 24 24 H 0.96996 * 119.99855 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00365 * 9 7 2 26 26 H 1.08997 * 109.47430 * 300.00000 * 9 7 2 27 27 H 0.96993 * 120.00417 * 0.02562 * 10 9 7 28 28 H 1.08998 * 109.47524 * 59.99426 * 13 11 10 29 29 H 1.09007 * 109.46824 * 299.99976 * 13 11 10 30 30 H 1.00894 * 110.99929 * 298.73244 * 14 13 11 31 31 H 1.07999 * 119.98223 * 179.97438 * 18 16 15 32 32 H 1.08002 * 119.96018 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5613 -5.1050 -0.0026 13 6 2.7328 -6.0289 -0.0032 14 7 1.9983 -7.3010 -0.0046 15 6 2.8749 -8.3866 -0.1242 16 6 3.5029 -8.9024 1.0041 17 9 3.2685 -8.3564 2.2175 18 6 4.3683 -9.9740 0.8829 19 6 4.6098 -10.5326 -0.3612 20 9 5.4562 -11.5793 -0.4776 21 6 3.9857 -10.0206 -1.4855 22 6 3.1138 -8.9537 -1.3687 23 35 2.2549 -8.2612 -2.9044 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5572 0.8896 27 1 3.1565 -3.4355 -0.0021 28 1 3.3596 -5.9717 0.8867 29 1 3.3595 -5.9706 -0.8932 30 1 1.4251 -7.3885 0.8211 31 1 4.8568 -10.3749 1.7586 32 1 4.1762 -10.4579 -2.4545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000037392960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:28 Heat of formation + Delta-G solvation = -93.004759 kcal Electronic energy + Delta-G solvation = -21359.818098 eV Core-core repulsion = 17423.772332 eV Total energy + Delta-G solvation = -3936.045766 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.32 seconds Orbital eigenvalues (eV) -49.49418 -49.45729 -39.87311 -38.70836 -35.64076 -34.15176 -32.59492 -32.34979 -30.20328 -29.58139 -27.65806 -25.72779 -23.47683 -22.73322 -22.13352 -19.79941 -18.62786 -18.15020 -17.61962 -16.79275 -16.47790 -16.31150 -15.84004 -15.61440 -15.46484 -15.08141 -14.78845 -14.57111 -14.34484 -13.82952 -13.67259 -13.08005 -12.87224 -12.73882 -12.42167 -12.08697 -11.95916 -11.56385 -10.99753 -10.98367 -10.89139 -10.36789 -10.33450 -9.65376 -9.41484 -9.28956 -8.97700 -8.75339 -8.68317 -7.90822 -6.17946 -4.25001 0.27749 0.34172 1.24851 2.64552 3.23368 3.28873 3.30198 3.31623 3.34907 3.50123 3.74647 4.13785 4.24689 4.28849 4.38333 4.70754 4.98075 5.14365 5.18183 5.25629 5.29917 5.34636 5.38954 5.47440 6.01122 6.56272 6.98080 7.28848 7.40027 7.50327 7.64495 7.95376 8.58637 8.75926 9.05881 9.41566 10.92231 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.002813 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.749244 B = 9950.879707 C =10793.088464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.885 5.885 2 C 0.064 3.936 3 Si 0.904 3.096 4 H -0.278 1.278 5 H -0.284 1.284 6 H -0.273 1.273 7 C -0.544 4.544 8 H 0.063 0.937 9 C 0.252 3.748 10 N -0.712 5.712 11 C 0.501 3.499 12 O -0.537 6.537 13 C 0.043 3.957 14 N -0.616 5.616 15 C 0.088 3.912 16 C 0.098 3.902 17 F -0.121 7.121 18 C -0.167 4.167 19 C 0.127 3.873 20 F -0.126 7.126 21 C -0.129 4.129 22 C -0.029 4.029 23 Br 0.004 6.996 24 H 0.266 0.734 25 H 0.028 0.972 26 H 0.027 0.973 27 H 0.390 0.610 28 H 0.065 0.935 29 H 0.102 0.898 30 H 0.371 0.629 31 H 0.154 0.846 32 H 0.155 0.845 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.028 -23.103 -2.620 25.733 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.522 5.522 2 C -0.140 4.140 3 Si 0.731 3.269 4 H -0.204 1.204 5 H -0.210 1.210 6 H -0.197 1.197 7 C -0.582 4.582 8 H 0.081 0.919 9 C 0.131 3.869 10 N -0.361 5.361 11 C 0.284 3.716 12 O -0.414 6.414 13 C -0.087 4.087 14 N -0.246 5.246 15 C -0.013 4.013 16 C 0.075 3.925 17 F -0.100 7.100 18 C -0.188 4.188 19 C 0.106 3.894 20 F -0.104 7.104 21 C -0.150 4.150 22 C -0.111 4.111 23 Br 0.091 6.909 24 H 0.076 0.924 25 H 0.046 0.954 26 H 0.045 0.955 27 H 0.222 0.778 28 H 0.083 0.917 29 H 0.120 0.880 30 H 0.195 0.805 31 H 0.172 0.828 32 H 0.173 0.827 Dipole moment (debyes) X Y Z Total from point charges 9.485 -22.766 -3.813 24.956 hybrid contribution 1.581 0.701 1.485 2.279 sum 11.066 -22.065 -2.329 24.794 Atomic orbital electron populations 1.69973 1.06107 1.27330 1.48818 1.24952 0.94914 0.99454 0.94688 0.86415 0.79614 0.82645 0.78238 1.20444 1.21005 1.19750 1.21222 0.93263 0.90443 1.53303 0.91896 1.19107 0.88222 0.81773 0.97800 1.46422 1.11181 1.05929 1.72607 1.20061 0.89299 0.84022 0.78234 1.90686 1.16332 1.84550 1.49844 1.21964 0.95796 0.87718 1.03175 1.57496 1.20053 0.98680 1.48369 1.18583 0.95687 0.96074 0.90933 1.17909 0.97878 0.95449 0.81237 1.91572 1.92919 1.84505 1.40969 1.21077 1.01431 0.97759 0.98520 1.17044 0.92110 0.87186 0.93055 1.91562 1.68014 1.54174 1.96674 1.21105 0.97526 0.96900 0.99490 1.21457 0.99481 0.97178 0.93002 1.96874 1.78085 1.85638 1.30332 0.92424 0.95428 0.95514 0.77750 0.91728 0.87955 0.80516 0.82786 0.82713 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.88 -25.94 13.29 55.43 0.74 -25.20 16 2 C 0.06 1.75 5.46 -17.82 -0.10 1.66 16 3 Si 0.90 20.69 29.54 -169.99 -5.02 15.67 16 4 H -0.28 -6.30 7.11 56.52 0.40 -5.90 16 5 H -0.28 -6.49 7.11 56.52 0.40 -6.09 16 6 H -0.27 -6.05 7.11 56.52 0.40 -5.65 16 7 C -0.54 -14.58 9.28 -34.44 -0.32 -14.90 16 8 H 0.06 1.57 7.60 -52.49 -0.40 1.17 16 9 C 0.25 6.57 5.43 -5.19 -0.03 6.54 16 10 N -0.71 -14.53 5.55 -61.47 -0.34 -14.87 16 11 C 0.50 9.58 7.88 -10.99 -0.09 9.49 16 12 O -0.54 -12.49 16.31 5.56 0.09 -12.40 16 13 C 0.04 0.59 6.09 -4.98 -0.03 0.56 16 14 N -0.62 -8.17 5.18 -59.41 -0.31 -8.48 16 15 C 0.09 0.97 5.27 -83.59 -0.44 0.53 16 16 C 0.10 0.97 7.26 -39.27 -0.28 0.68 16 17 F -0.12 -1.30 16.79 2.25 0.04 -1.26 16 18 C -0.17 -1.35 10.00 -39.47 -0.39 -1.74 16 19 C 0.13 1.03 7.30 -39.42 -0.29 0.74 16 20 F -0.13 -1.04 17.26 2.25 0.04 -1.00 16 21 C -0.13 -1.05 9.76 -39.50 -0.39 -1.44 16 22 C -0.03 -0.30 6.24 -39.35 -0.25 -0.54 16 23 Br 0.00 0.05 33.08 -68.01 -2.25 -2.20 16 24 H 0.27 7.31 8.31 -40.82 -0.34 6.97 16 25 H 0.03 0.80 8.14 -51.93 -0.42 0.38 16 26 H 0.03 0.77 8.14 -51.93 -0.42 0.35 16 27 H 0.39 6.75 8.32 -40.82 -0.34 6.41 16 28 H 0.06 0.77 8.14 -51.93 -0.42 0.34 16 29 H 0.10 1.26 8.11 -51.93 -0.42 0.84 16 30 H 0.37 5.02 8.25 -39.29 -0.32 4.69 16 31 H 0.15 0.94 8.06 -52.49 -0.42 0.52 16 32 H 0.16 0.97 8.06 -52.49 -0.42 0.55 16 LS Contribution 319.40 15.07 4.81 4.81 Total: -1.00 -31.23 319.40 -7.53 -38.76 By element: Atomic # 1 Polarization: 7.33 SS G_CDS: -2.73 Total: 4.59 kcal Atomic # 6 Polarization: 4.17 SS G_CDS: -2.60 Total: 1.57 kcal Atomic # 7 Polarization: -48.63 SS G_CDS: 0.09 Total: -48.54 kcal Atomic # 8 Polarization: -12.49 SS G_CDS: 0.09 Total: -12.40 kcal Atomic # 9 Polarization: -2.34 SS G_CDS: 0.08 Total: -2.27 kcal Atomic # 14 Polarization: 20.69 SS G_CDS: -5.02 Total: 15.67 kcal Atomic # 35 Polarization: 0.05 SS G_CDS: -2.25 Total: -2.20 kcal Total LS contribution 4.81 Total: 4.81 kcal Total: -31.23 -7.53 -38.76 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037392960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -54.245 kcal (2) G-P(sol) polarization free energy of solvation -31.225 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -85.470 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -7.535 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.760 kcal (6) G-S(sol) free energy of system = (1) + (5) -93.005 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.32 seconds