Wall clock time and date at job start Wed Apr 1 2020 05:22:27 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 N 2 2 C 1.31514 * 1 3 3 Si 1.86794 * 120.00236 * 2 1 4 4 H 1.48493 * 109.47242 * 269.99857 * 3 2 1 5 5 H 1.48502 * 109.47173 * 30.00061 * 3 2 1 6 6 H 1.48502 * 109.47122 * 149.99930 * 3 2 1 7 7 C 1.37882 * 119.99802 * 180.02562 * 2 1 3 8 8 H 1.07993 * 120.00158 * 179.97438 * 7 2 1 9 9 C 1.50705 * 119.99824 * 359.97438 * 7 2 1 10 10 N 1.46501 * 109.46665 * 179.97438 * 9 7 2 11 11 C 1.34777 * 119.99628 * 180.02562 * 10 9 7 12 12 O 1.21274 * 120.00176 * 0.02562 * 11 10 9 13 13 C 1.50697 * 120.00030 * 180.02562 * 11 10 9 14 14 N 1.46900 * 109.47284 * 180.02562 * 13 11 10 15 15 C 1.40044 * 111.00117 * 174.78053 * 14 13 11 16 16 C 1.39048 * 120.06049 * 83.97063 * 15 14 13 17 17 F 1.35103 * 120.03719 * 359.97438 * 16 15 14 18 18 C 1.38276 * 119.93066 * 180.02562 * 16 15 14 19 19 C 1.38502 * 120.03419 * 0.02581 * 18 16 15 20 20 F 1.35105 * 119.93906 * 179.97438 * 19 18 16 21 21 C 1.38411 * 120.11727 * 359.97438 * 19 18 16 22 22 C 1.38284 * 120.07534 * 359.67712 * 21 19 18 23 23 Br 1.89096 * 120.01842 * 180.32300 * 22 21 19 24 24 H 0.96996 * 119.99855 * 0.02562 * 1 2 3 25 25 H 1.08995 * 109.47223 * 60.00365 * 9 7 2 26 26 H 1.08997 * 109.47430 * 300.00000 * 9 7 2 27 27 H 0.96993 * 120.00417 * 0.02562 * 10 9 7 28 28 H 1.08998 * 109.47524 * 59.99426 * 13 11 10 29 29 H 1.09007 * 109.46824 * 299.99976 * 13 11 10 30 30 H 1.00894 * 110.99929 * 298.73244 * 14 13 11 31 31 H 1.07999 * 119.98223 * 179.97438 * 18 16 15 32 32 H 1.08002 * 119.96018 * 179.97438 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 7 0.0000 0.0000 0.0000 2 6 1.3151 0.0000 0.0000 3 14 2.2492 1.6176 0.0000 4 1 2.4967 2.0463 -1.4000 5 1 1.4467 2.6526 0.7001 6 1 3.5467 1.4400 0.7001 7 6 2.0045 -1.1941 -0.0005 8 1 3.0844 -1.1942 -0.0010 9 6 1.2509 -2.4992 -0.0005 10 7 2.2029 -3.6127 -0.0018 11 6 1.7536 -4.8834 -0.0025 12 8 0.5613 -5.1050 -0.0026 13 6 2.7328 -6.0289 -0.0032 14 7 1.9983 -7.3010 -0.0046 15 6 2.8749 -8.3866 -0.1242 16 6 3.5029 -8.9024 1.0041 17 9 3.2685 -8.3564 2.2175 18 6 4.3683 -9.9740 0.8829 19 6 4.6098 -10.5326 -0.3612 20 9 5.4562 -11.5793 -0.4776 21 6 3.9857 -10.0206 -1.4855 22 6 3.1138 -8.9537 -1.3687 23 35 2.2549 -8.2612 -2.9044 24 1 -0.4850 0.8400 -0.0004 25 1 0.6240 -2.5568 -0.8903 26 1 0.6246 -2.5572 0.8896 27 1 3.1565 -3.4355 -0.0021 28 1 3.3596 -5.9717 0.8867 29 1 3.3595 -5.9706 -0.8932 30 1 1.4251 -7.3885 0.8211 31 1 4.8568 -10.3749 1.7586 32 1 4.1762 -10.4579 -2.4545 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000037392960.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:22:27 Heat of formation + Delta-G solvation = -114.290645 kcal Electronic energy + Delta-G solvation = -21360.741123 eV Core-core repulsion = 17423.772332 eV Total energy + Delta-G solvation = -3936.968791 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.33 seconds Orbital eigenvalues (eV) -50.26978 -50.11376 -40.89803 -40.07667 -36.70781 -36.00525 -34.34126 -33.35715 -31.13615 -30.52131 -29.31074 -27.08891 -24.46943 -24.19557 -23.12911 -21.45967 -19.46727 -19.14827 -18.77415 -18.09104 -17.49751 -17.08077 -17.02272 -16.96776 -16.52390 -16.46970 -16.17731 -15.64847 -15.28006 -15.11428 -14.72872 -14.37733 -14.21982 -13.91277 -13.71332 -13.57149 -13.21827 -12.91323 -12.75689 -12.69332 -12.22280 -11.75630 -11.47859 -11.21417 -10.92779 -10.79503 -10.25977 -10.01919 -9.81677 -9.54226 -8.28357 -6.44708 -0.44949 -0.36825 0.46483 1.43888 1.46073 1.57159 1.75057 1.91312 2.22940 2.42372 2.68509 2.91811 3.03371 3.06742 3.57192 3.64617 3.87308 3.96512 4.16469 4.24148 4.35653 4.50350 4.61204 4.74391 5.11467 5.26167 5.30283 5.48789 5.59733 5.71587 5.85929 6.00657 6.66318 6.90998 7.24422 7.49078 8.83788 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.017509 B = 0.002813 C = 0.002594 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1598.749244 B = 9950.879707 C =10793.088464 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 N -0.931 5.931 2 C 0.004 3.996 3 Si 0.984 3.016 4 H -0.271 1.271 5 H -0.285 1.285 6 H -0.255 1.255 7 C -0.555 4.555 8 H 0.084 0.916 9 C 0.269 3.731 10 N -0.708 5.708 11 C 0.499 3.501 12 O -0.582 6.582 13 C 0.062 3.938 14 N -0.629 5.629 15 C 0.075 3.925 16 C 0.095 3.905 17 F -0.128 7.128 18 C -0.154 4.154 19 C 0.134 3.866 20 F -0.123 7.123 21 C -0.118 4.118 22 C -0.035 4.035 23 Br -0.013 7.013 24 H 0.268 0.732 25 H -0.013 1.013 26 H -0.011 1.011 27 H 0.408 0.592 28 H 0.091 0.909 29 H 0.121 0.879 30 H 0.366 0.634 31 H 0.177 0.823 32 H 0.175 0.825 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 13.989 -23.902 -2.470 27.804 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 N -0.570 5.570 2 C -0.196 4.196 3 Si 0.807 3.193 4 H -0.197 1.197 5 H -0.211 1.211 6 H -0.179 1.179 7 C -0.593 4.593 8 H 0.102 0.898 9 C 0.146 3.854 10 N -0.358 5.358 11 C 0.285 3.715 12 O -0.462 6.462 13 C -0.068 4.068 14 N -0.259 5.259 15 C -0.025 4.025 16 C 0.072 3.928 17 F -0.107 7.107 18 C -0.174 4.174 19 C 0.113 3.887 20 F -0.101 7.101 21 C -0.139 4.139 22 C -0.117 4.117 23 Br 0.073 6.927 24 H 0.077 0.923 25 H 0.005 0.995 26 H 0.006 0.994 27 H 0.244 0.756 28 H 0.109 0.891 29 H 0.139 0.861 30 H 0.189 0.811 31 H 0.195 0.805 32 H 0.192 0.808 Dipole moment (debyes) X Y Z Total from point charges 12.506 -23.607 -3.666 26.965 hybrid contribution 0.660 0.801 1.444 1.779 sum 13.166 -22.806 -2.222 26.427 Atomic orbital electron populations 1.70137 1.08264 1.28529 1.50027 1.26055 0.95755 1.03876 0.93916 0.85173 0.78531 0.77052 0.78571 1.19660 1.21058 1.17851 1.21628 0.94337 0.90582 1.52782 0.89763 1.18521 0.88615 0.84158 0.94126 1.46141 1.11255 1.05391 1.73038 1.21013 0.89677 0.84641 0.76142 1.90664 1.18874 1.85230 1.51460 1.21800 0.94074 0.85663 1.05218 1.57404 1.20976 0.99136 1.48433 1.18548 0.96285 0.95903 0.91757 1.17871 0.98384 0.96014 0.80553 1.91559 1.93069 1.84740 1.41293 1.21256 1.00239 0.96557 0.99371 1.17017 0.91762 0.86965 0.92960 1.91581 1.67877 1.54025 1.96649 1.21268 0.96239 0.95784 1.00565 1.21422 1.00210 0.98003 0.92092 1.96867 1.78628 1.85986 1.31212 0.92283 0.99482 0.99355 0.75605 0.89117 0.86062 0.81064 0.80545 0.80781 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 13. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 N -0.93 -56.07 13.29 21.45 0.28 -55.79 16 2 C 0.00 0.20 5.46 84.66 0.46 0.66 16 3 Si 0.98 42.05 29.54 68.60 2.03 44.08 16 4 H -0.27 -11.23 7.11 99.48 0.71 -10.52 16 5 H -0.28 -12.12 7.11 99.48 0.71 -11.41 16 6 H -0.25 -10.09 7.11 99.48 0.71 -9.38 16 7 C -0.56 -29.92 9.28 25.60 0.24 -29.68 16 8 H 0.08 4.08 7.60 -2.91 -0.02 4.05 16 9 C 0.27 14.60 5.43 85.63 0.46 15.07 16 10 N -0.71 -29.12 5.55 -466.80 -2.59 -31.71 16 11 C 0.50 19.31 7.88 87.66 0.69 20.00 16 12 O -0.58 -28.18 16.31 -3.01 -0.05 -28.23 16 13 C 0.06 1.62 6.09 85.56 0.52 2.14 16 14 N -0.63 -16.29 5.18 -341.88 -1.77 -18.06 16 15 C 0.08 1.53 5.27 38.16 0.20 1.74 16 16 C 0.09 1.65 7.26 22.47 0.16 1.82 16 17 F -0.13 -2.53 16.79 44.97 0.75 -1.77 16 18 C -0.15 -2.00 10.00 22.34 0.22 -1.78 16 19 C 0.13 1.75 7.30 22.37 0.16 1.91 16 20 F -0.12 -1.63 17.26 44.97 0.78 -0.86 16 21 C -0.12 -1.61 9.76 22.32 0.22 -1.39 16 22 C -0.04 -0.66 6.24 22.42 0.14 -0.52 16 23 Br -0.01 -0.29 33.08 -20.37 -0.67 -0.96 16 24 H 0.27 15.10 8.31 -92.71 -0.77 14.33 16 25 H -0.01 -0.79 8.14 -2.39 -0.02 -0.81 16 26 H -0.01 -0.70 8.14 -2.39 -0.02 -0.72 16 27 H 0.41 13.68 8.32 -92.71 -0.77 12.91 16 28 H 0.09 1.94 8.14 -2.39 -0.02 1.92 16 29 H 0.12 2.75 8.11 -2.38 -0.02 2.73 16 30 H 0.37 9.92 8.25 -89.70 -0.74 9.18 16 31 H 0.18 1.50 8.06 -2.91 -0.02 1.47 16 32 H 0.17 1.68 8.06 -2.91 -0.02 1.65 16 Total: -1.00 -69.87 319.40 1.94 -67.94 By element: Atomic # 1 Polarization: 15.71 SS G_CDS: -0.31 Total: 15.41 kcal Atomic # 6 Polarization: 6.47 SS G_CDS: 3.49 Total: 9.96 kcal Atomic # 7 Polarization: -101.48 SS G_CDS: -4.08 Total: -105.55 kcal Atomic # 8 Polarization: -28.18 SS G_CDS: -0.05 Total: -28.23 kcal Atomic # 9 Polarization: -4.16 SS G_CDS: 1.53 Total: -2.63 kcal Atomic # 14 Polarization: 42.05 SS G_CDS: 2.03 Total: 44.08 kcal Atomic # 35 Polarization: -0.29 SS G_CDS: -0.67 Total: -0.96 kcal Total: -69.87 1.94 -67.94 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000037392960.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -46.356 kcal (2) G-P(sol) polarization free energy of solvation -69.872 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -116.228 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.937 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.935 kcal (6) G-S(sol) free energy of system = (1) + (5) -114.291 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.33 seconds