Wall clock time and date at job start Wed Apr 1 2020 05:39:32 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 N 1.46494 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00319 * 272.84103 * 4 3 2 6 6 H 1.08000 * 119.99694 * 29.11714 * 5 4 3 7 7 C 1.38809 * 120.00443 * 209.12631 * 5 4 3 8 8 N 1.31620 * 120.00073 * 36.51340 * 7 5 4 9 9 Si 1.86803 * 120.00120 * 216.51707 * 7 5 4 10 10 H 1.48506 * 109.46861 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46950 * 119.99583 * 9 7 5 12 12 H 1.48497 * 109.47120 * 239.99894 * 9 7 5 13 13 S 1.65603 * 120.00374 * 92.83762 * 4 3 2 14 14 O 1.42097 * 106.40601 * 194.42061 * 13 4 3 15 15 O 1.42101 * 106.40013 * 327.34331 * 13 4 3 16 16 C 1.76198 * 107.21736 * 80.87629 * 13 4 3 17 17 C 1.38265 * 119.98728 * 343.95187 * 16 13 4 18 18 C 1.38196 * 120.01160 * 179.72814 * 17 16 13 19 19 C 1.38374 * 119.98771 * 0.54022 * 18 17 16 20 20 Cl 1.73599 * 120.01373 * 179.75756 * 19 18 17 21 21 C 1.38332 * 119.96986 * 359.72484 * 19 18 17 22 22 C 1.38216 * 119.98797 * 164.21696 * 16 13 4 23 23 N 1.48026 * 119.99290 * 359.97438 * 22 16 13 24 24 O 1.21797 * 119.99794 * 217.48078 * 23 22 16 25 25 O 1.21797 * 119.99733 * 37.47642 * 23 22 16 26 26 H 1.09003 * 109.47592 * 299.99786 * 1 2 3 27 27 H 1.08997 * 109.47532 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46981 * 239.99992 * 2 1 3 30 30 H 1.08997 * 109.46789 * 119.99896 * 2 1 3 31 31 H 1.08998 * 109.47239 * 59.99626 * 3 2 1 32 32 H 1.09004 * 109.47163 * 299.99994 * 3 2 1 33 33 H 0.96998 * 119.99911 * 180.02562 * 8 7 5 34 34 H 1.07998 * 119.99274 * 359.97438 * 17 16 13 35 35 H 1.08001 * 120.00483 * 180.25085 * 18 17 16 36 36 H 1.08009 * 120.00383 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 1.3836 1.1835 6 1 3.7529 0.8855 2.0362 7 6 5.4466 1.9642 1.2880 8 7 5.7060 3.0898 0.6571 9 14 6.7695 1.1480 2.3241 10 1 6.2288 -0.0974 2.9257 11 1 7.9363 0.8182 1.4667 12 1 7.1947 2.0747 3.4037 13 16 4.3324 1.5138 -1.4333 14 8 5.6765 1.1592 -1.1385 15 8 3.5387 0.8248 -2.3897 16 6 4.3618 3.2025 -1.9352 17 6 3.4941 4.1105 -1.3570 18 6 3.5206 5.4363 -1.7462 19 6 4.4081 5.8527 -2.7228 20 17 4.4376 7.5167 -3.2167 21 6 5.2722 4.9427 -3.3048 22 6 5.2485 3.6179 -2.9107 23 7 6.1735 2.6442 -3.5330 24 8 7.3099 2.9789 -3.8161 25 8 5.7982 1.5083 -3.7619 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.5841 3.4954 0.7298 34 1 2.7982 3.7844 -0.5982 35 1 2.8456 6.1462 -1.2916 36 1 5.9654 5.2673 -4.0668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044373713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:32 Heat of formation + Delta-G solvation = -38.664626 kcal Electronic energy + Delta-G solvation = -28007.151953 eV Core-core repulsion = 23841.730625 eV Total energy + Delta-G solvation = -4165.421328 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 1.24 seconds Orbital eigenvalues (eV) -42.00081 -39.31029 -36.82566 -36.48264 -36.29179 -36.24033 -34.75532 -33.04983 -32.02507 -31.28453 -30.97205 -26.52588 -26.07462 -23.81193 -23.47870 -22.47742 -20.97834 -19.66545 -19.03087 -18.48876 -17.88427 -17.37169 -16.73419 -15.96727 -15.79735 -15.54422 -14.91803 -14.59455 -14.37994 -14.15445 -13.88296 -13.51156 -13.13440 -13.08598 -12.35018 -12.18740 -11.99564 -11.89195 -11.73150 -11.46656 -11.37762 -11.28251 -11.10185 -11.05988 -10.97872 -10.90308 -10.83442 -10.64533 -10.42310 -10.35734 -10.26921 -9.90440 -9.52496 -9.24531 -9.09836 -8.01137 -6.60768 -4.01112 0.02089 0.67987 1.25350 1.31540 1.36077 1.89424 3.10241 3.25680 3.39760 3.45076 3.83622 4.26052 4.38492 4.51397 4.63649 4.82913 4.96641 5.04407 5.26078 5.37604 5.42788 5.46302 5.66509 5.73057 5.77573 5.80440 5.82289 6.16216 6.19535 6.23840 6.33057 6.55706 6.57981 6.84610 7.02553 7.49882 7.80782 8.24373 8.86587 9.26250 10.50684 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.005644 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.889708 B = 4959.596302 C = 5486.697870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.147 4.147 2 C -0.146 4.146 3 C 0.124 3.876 4 N -0.853 5.853 5 C -0.339 4.339 6 H 0.097 0.903 7 C 0.060 3.940 8 N -0.868 5.868 9 Si 0.918 3.082 10 H -0.269 1.269 11 H -0.274 1.274 12 H -0.288 1.288 13 S 2.684 3.316 14 O -0.931 6.931 15 O -0.969 6.969 16 C -0.556 4.556 17 C 0.012 3.988 18 C -0.083 4.083 19 C -0.006 4.006 20 Cl -0.048 7.048 21 C -0.075 4.075 22 C 0.055 3.945 23 N 0.020 4.980 24 O -0.124 6.124 25 O -0.155 6.155 26 H 0.051 0.949 27 H 0.051 0.949 28 H 0.051 0.949 29 H 0.069 0.931 30 H 0.069 0.931 31 H 0.076 0.924 32 H 0.049 0.951 33 H 0.275 0.725 34 H 0.162 0.838 35 H 0.153 0.847 36 H 0.156 0.844 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.465 6.756 -3.545 10.674 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.205 4.205 2 C -0.186 4.186 3 C -0.003 4.003 4 N -0.687 5.687 5 C -0.468 4.468 6 H 0.114 0.886 7 C -0.147 4.147 8 N -0.507 5.507 9 Si 0.745 3.255 10 H -0.193 1.193 11 H -0.199 1.199 12 H -0.215 1.215 13 S 2.767 3.233 14 O -0.920 6.920 15 O -0.958 6.958 16 C -0.636 4.636 17 C -0.007 4.007 18 C -0.102 4.102 19 C -0.034 4.034 20 Cl -0.018 7.018 21 C -0.095 4.095 22 C -0.028 4.028 23 N 0.543 4.457 24 O -0.349 6.349 25 O -0.368 6.368 26 H 0.071 0.929 27 H 0.070 0.930 28 H 0.070 0.930 29 H 0.087 0.913 30 H 0.088 0.912 31 H 0.094 0.906 32 H 0.067 0.933 33 H 0.085 0.915 34 H 0.179 0.821 35 H 0.171 0.829 36 H 0.174 0.826 Dipole moment (debyes) X Y Z Total from point charges -7.452 6.870 -3.812 10.829 hybrid contribution 1.019 0.648 0.350 1.257 sum -6.434 7.517 -3.462 10.483 Atomic orbital electron populations 1.21711 0.96255 1.01255 1.01310 1.22006 0.94892 0.98479 1.03212 1.21270 0.81767 0.96366 1.00935 1.52974 1.10501 1.85818 1.19417 1.18731 1.00301 1.36875 0.90857 0.88575 1.25084 0.99279 0.92833 0.97502 1.69933 1.23478 1.13062 1.44195 0.86055 0.81579 0.79639 0.78271 1.19293 1.19898 1.21507 1.02867 0.74511 0.72903 0.73019 1.93516 1.35246 1.79714 1.83520 1.93534 1.71447 1.68635 1.62228 1.31526 0.99261 1.31392 1.01383 1.20819 0.94645 0.91043 0.94214 1.21476 0.97276 0.96896 0.94561 1.20644 0.98338 0.86178 0.98202 1.98390 1.97857 1.15057 1.90543 1.20571 0.98800 0.89310 1.00829 1.20094 0.94437 0.89409 0.98900 1.43611 1.01433 1.01694 0.98916 1.94491 1.03240 1.83575 1.53603 1.94630 1.80743 1.04347 1.57059 0.92950 0.92977 0.93026 0.91275 0.91207 0.90597 0.93255 0.91480 0.82056 0.82940 0.82593 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 41. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.87 9.91 37.16 0.37 -1.51 16 2 C -0.15 -2.43 6.25 -26.73 -0.17 -2.59 16 3 C 0.12 2.19 4.12 -4.05 -0.02 2.17 16 4 N -0.85 -19.00 2.22 -59.91 -0.13 -19.13 16 5 C -0.34 -8.20 9.27 -15.06 -0.14 -8.34 16 6 H 0.10 2.23 8.04 -52.49 -0.42 1.81 16 7 C 0.06 1.53 3.39 -17.43 -0.06 1.47 16 8 N -0.87 -22.10 10.71 55.49 0.59 -21.51 16 9 Si 0.92 21.39 29.68 -169.99 -5.04 16.35 16 10 H -0.27 -6.03 7.11 56.52 0.40 -5.63 16 11 H -0.27 -6.80 7.11 56.52 0.40 -6.40 16 12 H -0.29 -6.47 7.11 56.52 0.40 -6.07 16 13 S 2.68 64.89 3.21 -107.50 -0.34 64.54 16 14 O -0.93 -25.78 13.37 -65.14 -0.87 -26.65 16 15 O -0.97 -23.76 16.09 -64.20 -1.03 -24.79 16 16 C -0.56 -11.70 4.58 -39.58 -0.18 -11.88 16 17 C 0.01 0.21 9.23 -39.59 -0.37 -0.16 16 18 C -0.08 -1.17 9.83 -39.55 -0.39 -1.55 16 19 C -0.01 -0.08 6.32 -39.50 -0.25 -0.33 16 20 Cl -0.05 -0.55 28.96 -51.86 -1.50 -2.05 16 21 C -0.07 -1.22 9.45 -39.55 -0.37 -1.59 16 22 C 0.05 1.12 6.45 -79.95 -0.52 0.60 16 23 N 0.02 0.44 3.93 33.96 0.13 0.57 16 24 O -0.12 -2.62 18.95 -29.46 -0.56 -3.18 16 25 O -0.16 -3.74 15.62 -38.25 -0.60 -4.33 16 26 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.59 8.14 -51.93 -0.42 0.17 16 29 H 0.07 1.26 7.62 -51.93 -0.40 0.87 16 30 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 31 H 0.08 1.21 8.06 -51.93 -0.42 0.79 16 32 H 0.05 0.78 7.42 -51.93 -0.39 0.40 16 33 H 0.28 6.99 8.31 -40.82 -0.34 6.65 16 34 H 0.16 2.57 5.89 -52.49 -0.31 2.26 16 35 H 0.15 1.57 8.06 -52.49 -0.42 1.15 16 36 H 0.16 2.15 8.01 -52.48 -0.42 1.73 16 LS Contribution 336.84 15.07 5.08 5.08 Total: -1.00 -30.01 336.84 -9.97 -39.98 By element: Atomic # 1 Polarization: 2.44 SS G_CDS: -3.60 Total: -1.16 kcal Atomic # 6 Polarization: -21.62 SS G_CDS: -2.09 Total: -23.71 kcal Atomic # 7 Polarization: -40.67 SS G_CDS: 0.59 Total: -40.07 kcal Atomic # 8 Polarization: -55.90 SS G_CDS: -3.06 Total: -58.96 kcal Atomic # 14 Polarization: 21.39 SS G_CDS: -5.04 Total: 16.35 kcal Atomic # 16 Polarization: 64.89 SS G_CDS: -0.34 Total: 64.54 kcal Atomic # 17 Polarization: -0.55 SS G_CDS: -1.50 Total: -2.05 kcal Total LS contribution 5.08 Total: 5.08 kcal Total: -30.01 -9.97 -39.98 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.314 kcal (2) G-P(sol) polarization free energy of solvation -30.009 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -28.696 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.969 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.978 kcal (6) G-S(sol) free energy of system = (1) + (5) -38.665 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.24 seconds