Wall clock time and date at job start Wed Apr 1 2020 05:39:31 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52998 * 109.46994 * 2 1 4 4 N 1.46494 * 109.47170 * 180.02562 * 3 2 1 5 5 C 1.36938 * 120.00319 * 272.84103 * 4 3 2 6 6 H 1.08000 * 119.99694 * 29.11714 * 5 4 3 7 7 C 1.38809 * 120.00443 * 209.12631 * 5 4 3 8 8 N 1.31620 * 120.00073 * 36.51340 * 7 5 4 9 9 Si 1.86803 * 120.00120 * 216.51707 * 7 5 4 10 10 H 1.48506 * 109.46861 * 359.97438 * 9 7 5 11 11 H 1.48503 * 109.46950 * 119.99583 * 9 7 5 12 12 H 1.48497 * 109.47120 * 239.99894 * 9 7 5 13 13 S 1.65603 * 120.00374 * 92.83762 * 4 3 2 14 14 O 1.42097 * 106.40601 * 194.42061 * 13 4 3 15 15 O 1.42101 * 106.40013 * 327.34331 * 13 4 3 16 16 C 1.76198 * 107.21736 * 80.87629 * 13 4 3 17 17 C 1.38265 * 119.98728 * 343.95187 * 16 13 4 18 18 C 1.38196 * 120.01160 * 179.72814 * 17 16 13 19 19 C 1.38374 * 119.98771 * 0.54022 * 18 17 16 20 20 Cl 1.73599 * 120.01373 * 179.75756 * 19 18 17 21 21 C 1.38332 * 119.96986 * 359.72484 * 19 18 17 22 22 C 1.38216 * 119.98797 * 164.21696 * 16 13 4 23 23 N 1.48026 * 119.99290 * 359.97438 * 22 16 13 24 24 O 1.21797 * 119.99794 * 217.48078 * 23 22 16 25 25 O 1.21797 * 119.99733 * 37.47642 * 23 22 16 26 26 H 1.09003 * 109.47592 * 299.99786 * 1 2 3 27 27 H 1.08997 * 109.47532 * 60.00085 * 1 2 3 28 28 H 1.09002 * 109.47002 * 180.02562 * 1 2 3 29 29 H 1.08996 * 109.46981 * 239.99992 * 2 1 3 30 30 H 1.08997 * 109.46789 * 119.99896 * 2 1 3 31 31 H 1.08998 * 109.47239 * 59.99626 * 3 2 1 32 32 H 1.09004 * 109.47163 * 299.99994 * 3 2 1 33 33 H 0.96998 * 119.99911 * 180.02562 * 8 7 5 34 34 H 1.07998 * 119.99274 * 359.97438 * 17 16 13 35 35 H 1.08001 * 120.00483 * 180.25085 * 18 17 16 36 36 H 1.08009 * 120.00383 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0399 1.4425 0.0000 4 7 3.5049 1.4425 -0.0006 5 6 4.1901 1.3836 1.1835 6 1 3.7529 0.8855 2.0362 7 6 5.4466 1.9642 1.2880 8 7 5.7060 3.0898 0.6571 9 14 6.7695 1.1480 2.3241 10 1 6.2288 -0.0974 2.9257 11 1 7.9363 0.8182 1.4667 12 1 7.1947 2.0747 3.4037 13 16 4.3324 1.5138 -1.4333 14 8 5.6765 1.1592 -1.1385 15 8 3.5387 0.8248 -2.3897 16 6 4.3618 3.2025 -1.9352 17 6 3.4941 4.1105 -1.3570 18 6 3.5206 5.4363 -1.7462 19 6 4.4081 5.8527 -2.7228 20 17 4.4376 7.5167 -3.2167 21 6 5.2722 4.9427 -3.3048 22 6 5.2485 3.6179 -2.9107 23 7 6.1735 2.6442 -3.5330 24 8 7.3099 2.9789 -3.8161 25 8 5.7982 1.5083 -3.7619 26 1 -0.3634 0.5138 0.8900 27 1 -0.3634 0.5138 -0.8899 28 1 -0.3633 -1.0277 0.0005 29 1 1.8933 -0.5138 -0.8900 30 1 1.8932 -0.5138 0.8900 31 1 1.6766 1.9563 0.8899 32 1 1.6766 1.9563 -0.8900 33 1 6.5841 3.4954 0.7298 34 1 2.7982 3.7844 -0.5982 35 1 2.8456 6.1462 -1.2916 36 1 5.9654 5.2673 -4.0668 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044373713.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:31 Heat of formation + Delta-G solvation = -55.927130 kcal Electronic energy + Delta-G solvation = -28007.900512 eV Core-core repulsion = 23841.730625 eV Total energy + Delta-G solvation = -4166.169887 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 1.20 seconds Orbital eigenvalues (eV) -43.65011 -40.63789 -38.13371 -38.09858 -37.97721 -37.82091 -36.59577 -34.64001 -33.40814 -32.65285 -32.54258 -28.06918 -27.62143 -25.39440 -24.82560 -23.96629 -22.30528 -21.31014 -20.69194 -20.17624 -19.47081 -19.00861 -18.34712 -17.63568 -17.10424 -17.03733 -16.58991 -16.26218 -15.85619 -15.60348 -15.32575 -14.97260 -14.49699 -14.34820 -13.92962 -13.57352 -13.56190 -13.25301 -13.19462 -13.06371 -12.92883 -12.87804 -12.78093 -12.67491 -12.59522 -12.50242 -12.33637 -12.24509 -12.08074 -12.00058 -11.91988 -11.34669 -10.81910 -10.81757 -10.51311 -9.82389 -8.52101 -5.88930 -1.50288 -0.65443 -0.45833 -0.19835 -0.07642 0.67270 1.37676 1.53595 1.55732 1.80389 2.13894 2.47875 2.75783 3.03057 3.15210 3.43504 3.48113 3.73669 3.88045 4.03362 4.11491 4.14943 4.29859 4.47304 4.51153 4.55232 4.63079 4.76697 4.88936 5.08671 5.11045 5.22865 5.30621 5.51132 5.56011 5.61568 6.09024 6.33620 7.05555 7.38591 8.56052 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010277 B = 0.005644 C = 0.005102 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2723.889708 B = 4959.596302 C = 5486.697870 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.140 4.140 2 C -0.150 4.150 3 C 0.118 3.882 4 N -0.862 5.862 5 C -0.325 4.325 6 H 0.103 0.897 7 C 0.025 3.975 8 N -0.865 5.865 9 Si 0.944 3.056 10 H -0.257 1.257 11 H -0.305 1.305 12 H -0.271 1.271 13 S 2.664 3.336 14 O -0.987 6.987 15 O -0.999 6.999 16 C -0.577 4.577 17 C 0.007 3.993 18 C -0.060 4.060 19 C 0.002 3.998 20 Cl -0.010 7.010 21 C -0.067 4.067 22 C 0.024 3.976 23 N 0.017 4.983 24 O -0.094 6.094 25 O -0.224 6.224 26 H 0.072 0.928 27 H 0.060 0.940 28 H 0.061 0.939 29 H 0.040 0.960 30 H 0.062 0.938 31 H 0.102 0.898 32 H 0.067 0.933 33 H 0.268 0.732 34 H 0.175 0.825 35 H 0.202 0.798 36 H 0.180 0.820 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.407 10.111 -2.567 14.047 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.198 4.198 2 C -0.190 4.190 3 C -0.008 4.008 4 N -0.695 5.695 5 C -0.457 4.457 6 H 0.120 0.880 7 C -0.182 4.182 8 N -0.504 5.504 9 Si 0.770 3.230 10 H -0.181 1.181 11 H -0.233 1.233 12 H -0.196 1.196 13 S 2.757 3.243 14 O -0.976 6.976 15 O -0.988 6.988 16 C -0.663 4.663 17 C -0.013 4.013 18 C -0.079 4.079 19 C -0.025 4.025 20 Cl 0.020 6.980 21 C -0.088 4.088 22 C -0.059 4.059 23 N 0.538 4.462 24 O -0.332 6.332 25 O -0.420 6.420 26 H 0.091 0.909 27 H 0.079 0.921 28 H 0.080 0.920 29 H 0.059 0.941 30 H 0.080 0.920 31 H 0.120 0.880 32 H 0.085 0.915 33 H 0.078 0.922 34 H 0.192 0.808 35 H 0.219 0.781 36 H 0.197 0.803 Dipole moment (debyes) X Y Z Total from point charges -9.523 10.061 -2.860 14.145 hybrid contribution 1.680 -0.152 0.007 1.686 sum -7.843 9.909 -2.853 12.956 Atomic orbital electron populations 1.21668 0.92889 1.02511 1.02744 1.22031 0.97900 0.97583 1.01453 1.21577 0.78780 0.97443 1.02978 1.52768 1.12167 1.86948 1.17649 1.18925 1.00964 1.35291 0.90542 0.87951 1.25568 1.00468 0.93472 0.98647 1.69978 1.22940 1.13327 1.44195 0.85635 0.79550 0.80177 0.77607 1.18055 1.23308 1.19646 1.03432 0.73581 0.73702 0.73598 1.93420 1.38335 1.81596 1.84211 1.93461 1.71370 1.70346 1.63653 1.30909 1.01904 1.29879 1.03559 1.21135 0.94016 0.91948 0.94173 1.21995 0.96687 0.96105 0.93067 1.20811 0.96943 0.87581 0.97210 1.98418 1.97635 1.11823 1.90133 1.20929 0.99233 0.87708 1.00886 1.20333 0.95180 0.90218 1.00172 1.43991 1.01740 1.01907 0.98607 1.94416 1.03614 1.83209 1.51936 1.94637 1.81314 1.05924 1.60173 0.90882 0.92121 0.91977 0.94141 0.91953 0.87953 0.91497 0.92202 0.80791 0.78125 0.80260 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 39. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.15 -4.92 6.25 30.59 0.19 -4.72 16 3 C 0.12 4.03 4.12 86.38 0.36 4.39 16 4 N -0.86 -38.46 2.22 -343.47 -0.76 -39.22 16 5 C -0.33 -15.63 9.27 84.03 0.78 -14.85 16 6 H 0.10 4.65 8.04 -2.91 -0.02 4.63 16 7 C 0.02 1.26 3.39 84.86 0.29 1.55 16 8 N -0.86 -43.90 10.71 21.65 0.23 -43.67 16 9 Si 0.94 43.73 29.68 68.60 2.04 45.76 16 10 H -0.26 -11.27 7.11 99.48 0.71 -10.56 16 11 H -0.31 -15.69 7.11 99.48 0.71 -14.99 16 12 H -0.27 -11.65 7.11 99.48 0.71 -10.95 16 13 S 2.66 133.75 3.21 -56.49 -0.18 133.56 16 14 O -0.99 -57.71 13.37 -120.38 -1.61 -59.32 16 15 O -1.00 -52.00 16.09 -121.28 -1.95 -53.95 16 16 C -0.58 -24.32 4.58 22.27 0.10 -24.22 16 17 C 0.01 0.21 9.23 22.27 0.21 0.42 16 18 C -0.06 -1.42 9.83 22.29 0.22 -1.20 16 19 C 0.00 0.06 6.32 22.32 0.14 0.20 16 20 Cl -0.01 -0.17 28.96 -2.72 -0.08 -0.25 16 21 C -0.07 -2.04 9.45 22.29 0.21 -1.83 16 22 C 0.02 0.99 6.45 36.37 0.23 1.22 16 23 N 0.02 0.79 3.93 -46.47 -0.18 0.61 16 24 O -0.09 -4.08 18.95 18.89 0.36 -3.72 16 25 O -0.22 -11.57 15.62 27.29 0.43 -11.14 16 26 H 0.07 1.41 8.14 -2.39 -0.02 1.39 16 27 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 28 H 0.06 1.31 8.14 -2.39 -0.02 1.29 16 29 H 0.04 1.53 7.62 -2.39 -0.02 1.51 16 30 H 0.06 2.08 8.14 -2.39 -0.02 2.06 16 31 H 0.10 2.97 8.06 -2.39 -0.02 2.95 16 32 H 0.07 2.03 7.42 -2.38 -0.02 2.02 16 33 H 0.27 13.69 8.31 -92.71 -0.77 12.92 16 34 H 0.17 5.09 5.89 -2.91 -0.02 5.07 16 35 H 0.20 2.82 8.06 -2.91 -0.02 2.80 16 36 H 0.18 4.45 8.01 -2.91 -0.02 4.43 16 Total: -1.00 -69.94 336.84 2.85 -67.09 By element: Atomic # 1 Polarization: 4.73 SS G_CDS: 1.13 Total: 5.86 kcal Atomic # 6 Polarization: -45.04 SS G_CDS: 3.44 Total: -41.60 kcal Atomic # 7 Polarization: -81.57 SS G_CDS: -0.71 Total: -82.28 kcal Atomic # 8 Polarization: -125.36 SS G_CDS: -2.78 Total: -128.13 kcal Atomic # 14 Polarization: 43.73 SS G_CDS: 2.04 Total: 45.76 kcal Atomic # 16 Polarization: 133.75 SS G_CDS: -0.18 Total: 133.56 kcal Atomic # 17 Polarization: -0.17 SS G_CDS: -0.08 Total: -0.25 kcal Total: -69.94 2.85 -67.09 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044373713.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 11.163 kcal (2) G-P(sol) polarization free energy of solvation -69.945 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -58.782 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.854 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -67.090 kcal (6) G-S(sol) free energy of system = (1) + (5) -55.927 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.20 seconds