Wall clock time and date at job start Wed Apr 1 2020 05:44:16 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46911 * 2 1 4 4 C 1.36937 * 119.99831 * 278.15538 * 3 2 1 5 5 H 1.07996 * 119.99996 * 142.15068 * 4 3 2 6 6 C 1.38816 * 119.99891 * 322.14538 * 4 3 2 7 7 N 1.31617 * 119.99829 * 160.37883 * 6 4 3 8 8 Si 1.86799 * 120.00020 * 340.38575 * 6 4 3 9 9 H 1.48502 * 109.47573 * 95.19538 * 8 6 4 10 10 H 1.48505 * 109.46741 * 215.19246 * 8 6 4 11 11 H 1.48502 * 109.47218 * 335.18838 * 8 6 4 12 12 S 1.65592 * 120.00130 * 98.15618 * 3 2 1 13 13 O 1.42095 * 106.40275 * 203.53549 * 12 3 2 14 14 O 1.42097 * 106.40483 * 336.45987 * 12 3 2 15 15 C 1.76207 * 107.21709 * 89.99871 * 12 3 2 16 16 C 1.38230 * 119.99215 * 90.00238 * 15 12 3 17 17 C 1.38334 * 119.98536 * 179.97438 * 16 15 12 18 18 Cl 1.73601 * 120.01564 * 179.97438 * 17 16 15 19 19 C 1.38375 * 119.97306 * 359.97438 * 17 16 15 20 20 C 1.50705 * 120.00593 * 179.97438 * 19 17 16 21 21 C 1.38193 * 119.98796 * 359.97438 * 19 17 16 22 22 N 1.48015 * 119.99401 * 180.02562 * 21 19 17 23 23 O 1.21802 * 120.00031 * 215.41743 * 22 21 19 24 24 O 1.21802 * 120.00211 * 35.42231 * 22 21 19 25 25 C 1.38221 * 119.99048 * 269.71900 * 15 12 3 26 26 H 1.09000 * 109.46967 * 305.01457 * 1 2 3 27 27 H 1.08996 * 109.47264 * 65.01389 * 1 2 3 28 28 H 1.08998 * 109.47027 * 185.01475 * 1 2 3 29 29 H 1.08993 * 109.47107 * 240.00217 * 2 1 3 30 30 H 1.08997 * 109.47077 * 119.99402 * 2 1 3 31 31 H 0.97006 * 120.00121 * 180.02562 * 7 6 4 32 32 H 1.08000 * 120.01084 * 359.95252 * 16 15 12 33 33 H 1.08996 * 109.47109 * 94.94589 * 20 19 17 34 34 H 1.08997 * 109.46586 * 214.94944 * 20 19 17 35 35 H 1.08999 * 109.46751 * 334.94906 * 20 19 17 36 36 H 1.08000 * 119.98817 * 0.02562 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0879 2.0829 -1.1739 5 1 1.8423 3.1344 -1.1899 6 6 2.4742 1.4424 -2.3434 7 7 2.1823 1.9735 -3.5118 8 14 3.4082 -0.1731 -2.2588 9 1 2.4533 -1.3040 -2.3791 10 1 4.3914 -0.2351 -3.3701 11 1 4.1227 -0.2644 -0.9602 12 16 2.4861 2.0941 1.4195 13 8 2.3686 3.4964 1.2222 14 8 1.8143 1.3966 2.4594 15 6 4.2043 1.7633 1.6279 16 6 5.1435 2.6394 1.1171 17 6 6.4924 2.3798 1.2812 18 17 7.6727 3.4792 0.6394 19 6 6.9004 1.2435 1.9571 20 6 8.3697 0.9597 2.1358 21 6 5.9604 0.3689 2.4683 22 7 6.3968 -0.8464 3.1918 23 8 5.7589 -1.8788 3.0882 24 8 7.3937 -0.8140 3.8909 25 6 4.6124 0.6308 2.3072 26 1 -0.3633 0.5897 0.8417 27 1 -0.3633 0.4341 -0.9314 28 1 -0.3633 -1.0237 0.0898 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.4519 1.5258 -4.3290 32 1 4.8245 3.5262 0.5896 33 1 8.6978 1.3385 3.1037 34 1 8.5401 -0.1159 2.0898 35 1 8.9337 1.4512 1.3431 36 1 3.8781 -0.0512 2.7097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000044411925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:16 Heat of formation + Delta-G solvation = -44.375698 kcal Electronic energy + Delta-G solvation = -27288.177726 eV Core-core repulsion = 23122.508747 eV Total energy + Delta-G solvation = -4165.668979 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.76 seconds Orbital eigenvalues (eV) -42.28689 -39.61231 -36.80081 -36.67531 -36.61226 -36.18122 -34.75895 -33.38132 -32.74965 -31.74681 -29.81203 -28.01664 -26.19013 -24.90710 -22.91000 -22.64574 -22.32524 -19.73681 -18.77303 -18.45028 -17.75340 -17.30633 -16.87540 -16.65245 -16.18235 -15.87046 -15.48795 -14.91703 -14.57317 -14.25268 -13.63644 -13.43059 -13.18400 -12.98628 -12.80643 -12.77203 -12.51969 -12.31640 -11.99319 -11.76808 -11.60503 -11.35902 -11.28131 -11.27422 -11.23367 -11.04664 -11.03560 -11.01050 -10.84912 -10.49649 -10.39455 -10.16502 -9.66963 -9.34660 -9.17647 -8.53638 -7.09693 -4.49922 -0.09686 0.46648 1.07959 1.16025 1.33301 1.83698 2.75992 2.87397 2.91454 2.92932 3.64438 3.83086 4.15039 4.31346 4.34432 4.55371 4.68341 4.74077 4.90532 5.15407 5.25983 5.34237 5.42382 5.45135 5.63926 5.71759 5.74356 5.82412 5.90683 5.97275 6.11995 6.39089 6.40322 6.65096 6.83280 6.99679 7.61172 7.83991 8.40609 8.51956 9.93815 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.005434 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.984329 B = 5151.417370 C = 5737.153199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.155 4.155 2 C 0.114 3.886 3 N -0.811 5.811 4 C -0.224 4.224 5 H 0.132 0.868 6 C 0.065 3.935 7 N -0.798 5.798 8 Si 0.883 3.117 9 H -0.260 1.260 10 H -0.280 1.280 11 H -0.259 1.259 12 S 2.491 3.509 13 O -0.965 6.965 14 O -0.992 6.992 15 C -0.643 4.643 16 C 0.033 3.967 17 C -0.061 4.061 18 Cl -0.040 7.040 19 C 0.005 3.995 20 C -0.130 4.130 21 C -0.057 4.057 22 N 0.031 4.969 23 O -0.154 6.154 24 O -0.153 6.153 25 C 0.031 3.969 26 H 0.061 0.939 27 H 0.068 0.932 28 H 0.058 0.942 29 H 0.056 0.944 30 H 0.073 0.927 31 H 0.289 0.711 32 H 0.167 0.833 33 H 0.100 0.900 34 H 0.079 0.921 35 H 0.086 0.914 36 H 0.161 0.839 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 7.317 -2.460 3.644 8.536 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.214 4.214 2 C -0.012 4.012 3 N -0.633 5.633 4 C -0.378 4.378 5 H 0.149 0.851 6 C -0.154 4.154 7 N -0.434 5.434 8 Si 0.709 3.291 9 H -0.186 1.186 10 H -0.207 1.207 11 H -0.183 1.183 12 S 2.591 3.409 13 O -0.955 6.955 14 O -0.982 6.982 15 C -0.716 4.716 16 C 0.014 3.986 17 C -0.089 4.089 18 Cl -0.011 7.011 19 C 0.002 3.998 20 C -0.187 4.187 21 C -0.140 4.140 22 N 0.553 4.447 23 O -0.371 6.371 24 O -0.370 6.370 25 C 0.011 3.989 26 H 0.080 0.920 27 H 0.087 0.913 28 H 0.076 0.924 29 H 0.074 0.926 30 H 0.092 0.908 31 H 0.100 0.900 32 H 0.184 0.816 33 H 0.118 0.882 34 H 0.098 0.902 35 H 0.104 0.896 36 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges 6.858 -1.311 4.036 8.065 hybrid contribution 1.618 -1.261 -0.123 2.055 sum 8.476 -2.572 3.913 9.684 Atomic orbital electron populations 1.22013 0.94791 1.01283 1.03350 1.21399 0.95834 0.82800 1.01133 1.54435 1.62909 1.22208 1.23765 1.19683 1.37665 0.98525 0.81937 0.85056 1.25952 0.94953 0.99345 0.95187 1.69785 1.36588 1.38740 0.98243 0.86790 0.80412 0.82500 0.79376 1.18614 1.20694 1.18310 1.14189 0.74272 0.76126 0.76271 1.93380 1.85289 1.31150 1.85651 1.93356 1.72431 1.74050 1.58314 1.33111 1.32517 1.00442 1.05559 1.21304 0.89490 0.97586 0.90237 1.20731 0.91228 0.93539 1.03397 1.98376 1.56901 1.60998 1.84852 1.19511 0.97073 0.90638 0.92532 1.21167 0.88977 1.03789 1.04727 1.20855 0.95078 0.90068 1.08002 1.43451 0.99900 1.02124 0.99242 1.94567 1.54761 1.19383 1.68365 1.94500 1.15563 1.91368 1.35599 1.20771 0.92814 0.95017 0.90339 0.91985 0.91260 0.92356 0.92630 0.90828 0.90012 0.81571 0.88187 0.90243 0.89567 0.82161 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 23. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -2.56 10.17 37.16 0.38 -2.18 16 2 C 0.11 2.09 5.13 -4.04 -0.02 2.07 16 3 N -0.81 -16.75 2.49 -59.91 -0.15 -16.90 16 4 C -0.22 -5.00 9.51 -15.06 -0.14 -5.15 16 5 H 0.13 3.17 7.62 -52.49 -0.40 2.77 16 6 C 0.07 1.44 5.37 -17.43 -0.09 1.35 16 7 N -0.80 -18.38 13.97 55.49 0.78 -17.61 16 8 Si 0.88 17.40 24.86 -169.99 -4.23 13.17 16 9 H -0.26 -4.84 6.74 56.52 0.38 -4.46 16 10 H -0.28 -5.56 7.11 56.52 0.40 -5.16 16 11 H -0.26 -5.09 7.11 56.52 0.40 -4.68 16 12 S 2.49 51.93 5.60 -107.50 -0.60 51.32 16 13 O -0.97 -22.29 16.22 -57.17 -0.93 -23.21 16 14 O -0.99 -21.64 16.18 -57.17 -0.93 -22.57 16 15 C -0.64 -11.96 5.97 -39.59 -0.24 -12.20 16 16 C 0.03 0.57 9.31 -39.55 -0.37 0.21 16 17 C -0.06 -0.94 6.31 -39.50 -0.25 -1.19 16 18 Cl -0.04 -0.52 27.21 -51.86 -1.41 -1.93 16 19 C 0.00 0.07 5.88 -104.59 -0.61 -0.54 16 20 C -0.13 -1.55 8.33 36.01 0.30 -1.25 16 21 C -0.06 -0.95 6.51 -79.95 -0.52 -1.47 16 22 N 0.03 0.51 4.17 33.96 0.14 0.66 16 23 O -0.15 -2.66 18.90 -29.46 -0.56 -3.22 16 24 O -0.15 -2.42 16.64 -29.46 -0.49 -2.91 16 25 C 0.03 0.54 9.13 -39.58 -0.36 0.18 16 26 H 0.06 1.05 8.14 -51.93 -0.42 0.62 16 27 H 0.07 1.17 8.14 -51.93 -0.42 0.75 16 28 H 0.06 0.79 8.14 -51.93 -0.42 0.37 16 29 H 0.06 1.02 2.77 -51.93 -0.14 0.88 16 30 H 0.07 1.23 7.50 -51.93 -0.39 0.84 16 31 H 0.29 6.10 8.31 -40.82 -0.34 5.76 16 32 H 0.17 2.75 7.62 -52.49 -0.40 2.35 16 33 H 0.10 1.06 8.14 -51.93 -0.42 0.64 16 34 H 0.08 0.96 6.81 -51.93 -0.35 0.61 16 35 H 0.09 0.90 6.70 -51.93 -0.35 0.55 16 36 H 0.16 2.69 7.54 -52.49 -0.40 2.30 16 LS Contribution 336.25 15.07 5.07 5.07 Total: -1.00 -25.66 336.25 -8.51 -34.18 By element: Atomic # 1 Polarization: 7.41 SS G_CDS: -3.28 Total: 4.13 kcal Atomic # 6 Polarization: -18.25 SS G_CDS: -1.93 Total: -20.18 kcal Atomic # 7 Polarization: -34.62 SS G_CDS: 0.77 Total: -33.85 kcal Atomic # 8 Polarization: -49.01 SS G_CDS: -2.90 Total: -51.91 kcal Atomic # 14 Polarization: 17.40 SS G_CDS: -4.23 Total: 13.17 kcal Atomic # 16 Polarization: 51.93 SS G_CDS: -0.60 Total: 51.32 kcal Atomic # 17 Polarization: -0.52 SS G_CDS: -1.41 Total: -1.93 kcal Total LS contribution 5.07 Total: 5.07 kcal Total: -25.66 -8.51 -34.18 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.200 kcal (2) G-P(sol) polarization free energy of solvation -25.665 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -35.864 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.511 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -34.176 kcal (6) G-S(sol) free energy of system = (1) + (5) -44.376 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.76 seconds