Wall clock time and date at job start Wed Apr 1 2020 05:44:15 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53002 * 1 3 3 N 1.46505 * 109.46911 * 2 1 4 4 C 1.36937 * 119.99831 * 278.15538 * 3 2 1 5 5 H 1.07996 * 119.99996 * 142.15068 * 4 3 2 6 6 C 1.38816 * 119.99891 * 322.14538 * 4 3 2 7 7 N 1.31617 * 119.99829 * 160.37883 * 6 4 3 8 8 Si 1.86799 * 120.00020 * 340.38575 * 6 4 3 9 9 H 1.48502 * 109.47573 * 95.19538 * 8 6 4 10 10 H 1.48505 * 109.46741 * 215.19246 * 8 6 4 11 11 H 1.48502 * 109.47218 * 335.18838 * 8 6 4 12 12 S 1.65592 * 120.00130 * 98.15618 * 3 2 1 13 13 O 1.42095 * 106.40275 * 203.53549 * 12 3 2 14 14 O 1.42097 * 106.40483 * 336.45987 * 12 3 2 15 15 C 1.76207 * 107.21709 * 89.99871 * 12 3 2 16 16 C 1.38230 * 119.99215 * 90.00238 * 15 12 3 17 17 C 1.38334 * 119.98536 * 179.97438 * 16 15 12 18 18 Cl 1.73601 * 120.01564 * 179.97438 * 17 16 15 19 19 C 1.38375 * 119.97306 * 359.97438 * 17 16 15 20 20 C 1.50705 * 120.00593 * 179.97438 * 19 17 16 21 21 C 1.38193 * 119.98796 * 359.97438 * 19 17 16 22 22 N 1.48015 * 119.99401 * 180.02562 * 21 19 17 23 23 O 1.21802 * 120.00031 * 215.41743 * 22 21 19 24 24 O 1.21802 * 120.00211 * 35.42231 * 22 21 19 25 25 C 1.38221 * 119.99048 * 269.71900 * 15 12 3 26 26 H 1.09000 * 109.46967 * 305.01457 * 1 2 3 27 27 H 1.08996 * 109.47264 * 65.01389 * 1 2 3 28 28 H 1.08998 * 109.47027 * 185.01475 * 1 2 3 29 29 H 1.08993 * 109.47107 * 240.00217 * 2 1 3 30 30 H 1.08997 * 109.47077 * 119.99402 * 2 1 3 31 31 H 0.97006 * 120.00121 * 180.02562 * 7 6 4 32 32 H 1.08000 * 120.01084 * 359.95252 * 16 15 12 33 33 H 1.08996 * 109.47109 * 94.94589 * 20 19 17 34 34 H 1.08997 * 109.46586 * 214.94944 * 20 19 17 35 35 H 1.08999 * 109.46751 * 334.94906 * 20 19 17 36 36 H 1.08000 * 119.98817 * 0.02562 * 25 15 12 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 7 2.0183 1.3813 0.0000 4 6 2.0879 2.0829 -1.1739 5 1 1.8423 3.1344 -1.1899 6 6 2.4742 1.4424 -2.3434 7 7 2.1823 1.9735 -3.5118 8 14 3.4082 -0.1731 -2.2588 9 1 2.4533 -1.3040 -2.3791 10 1 4.3914 -0.2351 -3.3701 11 1 4.1227 -0.2644 -0.9602 12 16 2.4861 2.0941 1.4195 13 8 2.3686 3.4964 1.2222 14 8 1.8143 1.3966 2.4594 15 6 4.2043 1.7633 1.6279 16 6 5.1435 2.6394 1.1171 17 6 6.4924 2.3798 1.2812 18 17 7.6727 3.4792 0.6394 19 6 6.9004 1.2435 1.9571 20 6 8.3697 0.9597 2.1358 21 6 5.9604 0.3689 2.4683 22 7 6.3968 -0.8464 3.1918 23 8 5.7589 -1.8788 3.0882 24 8 7.3937 -0.8140 3.8909 25 6 4.6124 0.6308 2.3072 26 1 -0.3633 0.5897 0.8417 27 1 -0.3633 0.4341 -0.9314 28 1 -0.3633 -1.0237 0.0898 29 1 1.8933 -0.5138 -0.8899 30 1 1.8933 -0.5137 0.8900 31 1 2.4519 1.5258 -4.3290 32 1 4.8245 3.5262 0.5896 33 1 8.6978 1.3385 3.1037 34 1 8.5401 -0.1159 2.0898 35 1 8.9337 1.4512 1.3431 36 1 3.8781 -0.0512 2.7097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000044411925.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:44:15 Heat of formation + Delta-G solvation = -58.630304 kcal Electronic energy + Delta-G solvation = -27288.795852 eV Core-core repulsion = 23122.508747 eV Total energy + Delta-G solvation = -4166.287105 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.89 seconds Orbital eigenvalues (eV) -43.59282 -40.92247 -38.25728 -38.04218 -37.93631 -37.87866 -36.60020 -34.64636 -34.35463 -33.05800 -31.28727 -29.23559 -27.48033 -26.55056 -24.25524 -24.08075 -23.64881 -21.18158 -20.09361 -20.05874 -19.08895 -18.91737 -18.44911 -18.18485 -17.66758 -17.29512 -16.83789 -16.26645 -15.96013 -15.71537 -15.17368 -14.97811 -14.72366 -14.31880 -14.13339 -13.86317 -13.77360 -13.59556 -13.27885 -13.21610 -12.94555 -12.90959 -12.85594 -12.80341 -12.73200 -12.58163 -12.48413 -12.45312 -12.22544 -12.06664 -11.91325 -11.68399 -11.03333 -10.89180 -10.43185 -10.16105 -8.72356 -6.23176 -1.40625 -0.89393 -0.44858 -0.21360 -0.04303 0.62167 1.20442 1.32581 1.37165 1.50898 2.05761 2.22317 2.68953 2.87431 2.98099 3.09517 3.26760 3.36364 3.53217 3.82509 3.95943 4.00289 4.15983 4.32831 4.36377 4.40898 4.48060 4.53146 4.61931 4.72461 4.78885 5.02358 5.10542 5.23365 5.41208 5.46714 6.11138 6.31580 6.76231 6.86954 8.36743 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.010842 B = 0.005434 C = 0.004879 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2581.984329 B = 5151.417370 C = 5737.153199 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C 0.099 3.901 3 N -0.822 5.822 4 C -0.254 4.254 5 H 0.097 0.903 6 C 0.045 3.955 7 N -0.847 5.847 8 Si 0.916 3.084 9 H -0.241 1.241 10 H -0.283 1.283 11 H -0.257 1.257 12 S 2.540 3.460 13 O -0.990 6.990 14 O -0.999 6.999 15 C -0.663 4.663 16 C 0.028 3.972 17 C -0.062 4.062 18 Cl -0.013 7.013 19 C 0.020 3.980 20 C -0.133 4.133 21 C -0.067 4.067 22 N 0.031 4.969 23 O -0.182 6.182 24 O -0.120 6.120 25 C 0.028 3.972 26 H 0.053 0.947 27 H 0.057 0.943 28 H 0.091 0.909 29 H 0.059 0.941 30 H 0.091 0.909 31 H 0.292 0.708 32 H 0.167 0.833 33 H 0.122 0.878 34 H 0.082 0.918 35 H 0.104 0.896 36 H 0.166 0.834 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.689 -3.653 5.235 11.603 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.213 4.213 2 C -0.026 4.026 3 N -0.647 5.647 4 C -0.404 4.404 5 H 0.115 0.885 6 C -0.171 4.171 7 N -0.483 5.483 8 Si 0.740 3.260 9 H -0.166 1.166 10 H -0.210 1.210 11 H -0.181 1.181 12 S 2.641 3.359 13 O -0.980 6.980 14 O -0.988 6.988 15 C -0.742 4.742 16 C 0.008 3.992 17 C -0.090 4.090 18 Cl 0.017 6.983 19 C 0.018 3.982 20 C -0.188 4.188 21 C -0.150 4.150 22 N 0.554 4.446 23 O -0.391 6.391 24 O -0.347 6.347 25 C 0.007 3.993 26 H 0.072 0.928 27 H 0.076 0.924 28 H 0.110 0.890 29 H 0.076 0.924 30 H 0.109 0.891 31 H 0.103 0.897 32 H 0.184 0.816 33 H 0.140 0.860 34 H 0.101 0.899 35 H 0.122 0.878 36 H 0.183 0.817 Dipole moment (debyes) X Y Z Total from point charges 9.107 -2.542 5.514 10.945 hybrid contribution 1.134 -0.805 -0.266 1.416 sum 10.241 -3.347 5.247 11.984 Atomic orbital electron populations 1.22028 0.93684 1.03206 1.02428 1.21723 0.97027 0.81777 1.02054 1.54016 1.64959 1.23101 1.22665 1.19150 1.40778 0.97258 0.83174 0.88522 1.26228 0.94961 1.01345 0.94531 1.69835 1.38959 1.40677 0.98829 0.86274 0.79888 0.80728 0.79096 1.16648 1.20973 1.18112 1.11133 0.74444 0.74955 0.75342 1.93373 1.86118 1.32439 1.86063 1.93367 1.73121 1.74230 1.58113 1.32451 1.30991 1.02166 1.08565 1.21400 0.90528 0.97360 0.89916 1.20711 0.91063 0.94152 1.03065 1.98392 1.55480 1.60045 1.84407 1.19928 0.98647 0.89408 0.90226 1.21358 0.86594 1.04330 1.06551 1.20900 0.95024 0.90530 1.08552 1.43400 0.99972 1.01993 0.99276 1.94590 1.55473 1.19553 1.69505 1.94480 1.14812 1.91142 1.34275 1.20807 0.93844 0.94569 0.90032 0.92759 0.92352 0.88984 0.92351 0.89088 0.89705 0.81572 0.86019 0.89924 0.87786 0.81662 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 28. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -5.00 10.17 71.98 0.73 -4.27 16 2 C 0.10 3.57 5.13 86.38 0.44 4.01 16 3 N -0.82 -34.37 2.49 -343.45 -0.86 -35.23 16 4 C -0.25 -11.87 9.51 84.03 0.80 -11.07 16 5 H 0.10 5.05 7.62 -2.91 -0.02 5.02 16 6 C 0.04 2.03 5.37 84.86 0.46 2.49 16 7 N -0.85 -40.83 13.97 21.65 0.30 -40.53 16 8 Si 0.92 35.33 24.86 68.60 1.71 37.04 16 9 H -0.24 -8.50 6.74 99.48 0.67 -7.82 16 10 H -0.28 -10.92 7.11 99.48 0.71 -10.22 16 11 H -0.26 -9.71 7.11 99.48 0.71 -9.01 16 12 S 2.54 105.66 5.60 -56.49 -0.32 105.34 16 13 O -0.99 -46.46 16.22 -128.00 -2.08 -48.54 16 14 O -1.00 -42.66 16.18 -128.00 -2.07 -44.73 16 15 C -0.66 -24.00 5.97 22.26 0.13 -23.87 16 16 C 0.03 0.91 9.31 22.29 0.21 1.12 16 17 C -0.06 -1.74 6.31 22.33 0.14 -1.60 16 18 Cl -0.01 -0.29 27.21 -2.72 -0.07 -0.36 16 19 C 0.02 0.55 5.88 -19.84 -0.12 0.43 16 20 C -0.13 -2.58 8.33 71.24 0.59 -1.98 16 21 C -0.07 -2.06 6.51 36.37 0.24 -1.82 16 22 N 0.03 0.95 4.17 -46.47 -0.19 0.76 16 23 O -0.18 -5.95 18.90 18.88 0.36 -5.60 16 24 O -0.12 -3.37 16.64 18.88 0.31 -3.05 16 25 C 0.03 0.93 9.13 22.27 0.20 1.13 16 26 H 0.05 1.81 8.14 -2.39 -0.02 1.79 16 27 H 0.06 2.00 8.14 -2.39 -0.02 1.98 16 28 H 0.09 2.31 8.14 -2.39 -0.02 2.29 16 29 H 0.06 2.09 2.77 -2.39 -0.01 2.08 16 30 H 0.09 2.90 7.50 -2.39 -0.02 2.88 16 31 H 0.29 12.89 8.31 -92.70 -0.77 12.12 16 32 H 0.17 5.46 7.62 -2.91 -0.02 5.44 16 33 H 0.12 1.96 8.14 -2.39 -0.02 1.94 16 34 H 0.08 1.63 6.81 -2.39 -0.02 1.61 16 35 H 0.10 1.69 6.70 -2.39 -0.02 1.68 16 36 H 0.17 5.29 7.54 -2.91 -0.02 5.27 16 Total: -1.00 -55.29 336.25 2.03 -53.26 By element: Atomic # 1 Polarization: 15.95 SS G_CDS: 1.11 Total: 17.06 kcal Atomic # 6 Polarization: -39.25 SS G_CDS: 3.83 Total: -35.42 kcal Atomic # 7 Polarization: -74.25 SS G_CDS: -0.75 Total: -75.00 kcal Atomic # 8 Polarization: -98.44 SS G_CDS: -3.48 Total: -101.91 kcal Atomic # 14 Polarization: 35.33 SS G_CDS: 1.71 Total: 37.04 kcal Atomic # 16 Polarization: 105.66 SS G_CDS: -0.32 Total: 105.34 kcal Atomic # 17 Polarization: -0.29 SS G_CDS: -0.07 Total: -0.36 kcal Total: -55.29 2.03 -53.26 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000044411925.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -5.372 kcal (2) G-P(sol) polarization free energy of solvation -55.290 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -60.663 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 2.032 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -53.258 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.630 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.89 seconds