Wall clock time and date at job start Wed Apr 1 2020 05:39:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 N 1.46502 * 109.47144 * 174.58023 * 3 2 1 5 5 C 1.36929 * 120.00127 * 84.77269 * 4 3 2 6 6 H 1.07998 * 120.00069 * 221.11290 * 5 4 3 7 7 C 1.38813 * 120.00219 * 40.83972 * 5 4 3 8 8 N 1.31619 * 120.00096 * 213.10622 * 7 5 4 9 9 Si 1.86802 * 119.99814 * 33.10634 * 7 5 4 10 10 H 1.48493 * 109.47099 * 91.52301 * 9 7 5 11 11 H 1.48502 * 109.46869 * 211.52184 * 9 7 5 12 12 H 1.48497 * 109.47155 * 331.51842 * 9 7 5 13 13 S 1.65603 * 119.99709 * 264.77063 * 4 3 2 14 14 O 1.42105 * 106.40079 * 23.54283 * 13 4 3 15 15 O 1.42100 * 106.39938 * 156.45752 * 13 4 3 16 16 C 1.76196 * 107.21686 * 270.00062 * 13 4 3 17 17 C 1.38270 * 119.98486 * 90.00223 * 16 13 4 18 18 C 1.38196 * 120.01140 * 179.97438 * 17 16 13 19 19 C 1.38375 * 119.98670 * 0.02732 * 18 17 16 20 20 Cl 1.73600 * 120.01185 * 180.02562 * 19 18 17 21 21 C 1.38329 * 119.97102 * 359.97438 * 19 18 17 22 22 N 1.48020 * 120.00423 * 179.97438 * 21 19 18 23 23 O 1.21807 * 120.00506 * 180.02562 * 22 21 19 24 24 O 1.21802 * 120.00001 * 0.02562 * 22 21 19 25 25 C 1.38213 * 119.98655 * 269.72346 * 16 13 4 26 26 H 1.09007 * 109.47210 * 59.02012 * 1 2 3 27 27 H 1.09002 * 109.47283 * 179.01975 * 1 2 3 28 28 H 1.09001 * 109.47290 * 299.02005 * 1 2 3 29 29 H 1.09007 * 109.46964 * 239.99503 * 2 1 3 30 30 H 1.08997 * 109.46814 * 120.00207 * 2 1 3 31 31 H 1.08997 * 109.47033 * 54.57364 * 3 2 1 32 32 H 1.09006 * 109.46976 * 294.57644 * 3 2 1 33 33 H 0.96995 * 120.00030 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.99613 * 0.02562 * 17 16 13 35 35 H 1.07994 * 120.00437 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.99715 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4992 1.4444 0.1305 5 6 4.2862 1.3002 -0.9808 6 1 5.1673 0.6769 -0.9413 7 6 3.9484 1.9505 -2.1597 8 7 4.2184 1.3916 -3.3203 9 14 3.1106 3.6191 -2.0989 10 1 4.1383 4.6904 -2.1317 11 1 2.2082 3.7627 -3.2695 12 1 2.3192 3.7303 -0.8473 13 16 4.1969 1.6212 1.6219 14 8 3.2273 1.1986 2.5710 15 8 5.4940 1.0486 1.5285 16 6 4.4327 3.3472 1.8861 17 6 3.4390 4.0960 2.4893 18 6 3.6236 5.4497 2.6973 19 6 4.8028 6.0558 2.3013 20 17 5.0356 7.7561 2.5628 21 6 5.7964 5.3061 1.6979 22 7 7.0579 5.9538 1.2734 23 8 7.9326 5.2937 0.7416 24 8 7.2212 7.1469 1.4559 25 6 5.6130 3.9509 1.4956 26 1 -0.3634 0.5290 -0.8811 27 1 -0.3634 -1.0275 -0.0176 28 1 -0.3634 0.4985 0.8986 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.5995 1.9835 0.8374 32 1 1.7582 1.9275 -0.9346 33 1 3.9820 1.8459 -4.1441 34 1 2.5189 3.6228 2.7988 35 1 2.8476 6.0344 3.1688 36 1 6.3908 3.3646 1.0290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000045092440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:35 Heat of formation + Delta-G solvation = -43.038522 kcal Electronic energy + Delta-G solvation = -27157.510891 eV Core-core repulsion = 22991.899897 eV Total energy + Delta-G solvation = -4165.610995 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.66 seconds Orbital eigenvalues (eV) -42.04115 -39.35782 -36.92965 -36.83081 -36.33256 -36.10498 -34.67254 -33.29620 -32.08411 -31.80985 -31.24531 -26.50248 -26.29523 -24.18240 -23.44377 -22.61585 -21.30330 -19.73531 -18.61847 -18.46741 -17.44474 -17.33242 -17.01837 -16.77882 -16.06528 -15.94608 -15.63552 -14.48524 -14.41717 -14.15139 -13.90059 -13.59244 -13.41695 -13.01685 -12.91275 -12.34932 -12.19922 -12.09114 -12.07434 -11.88290 -11.34376 -11.26014 -11.24716 -11.07948 -10.96726 -10.94958 -10.79736 -10.61665 -10.51321 -10.47477 -10.30732 -10.03777 -9.75008 -9.41023 -9.35522 -8.44088 -7.21910 -4.48958 -0.18308 0.54489 1.27215 1.32605 1.38842 1.70615 2.73760 2.84323 2.92525 2.97695 3.61426 3.86052 4.11996 4.25621 4.55349 4.64863 4.71231 4.94780 5.19581 5.30753 5.39804 5.45613 5.53720 5.56481 5.69038 5.77516 5.93724 6.06430 6.14548 6.17614 6.30171 6.49308 6.56226 6.70041 6.88596 6.96530 7.79699 7.84243 8.36063 8.53984 9.81526 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.004869 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.674587 B = 5749.863381 C = 6231.875888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.148 4.148 2 C -0.133 4.133 3 C 0.131 3.869 4 N -0.806 5.806 5 C -0.224 4.224 6 H 0.130 0.870 7 C 0.078 3.922 8 N -0.776 5.776 9 Si 0.852 3.148 10 H -0.267 1.267 11 H -0.267 1.267 12 H -0.247 1.247 13 S 2.471 3.529 14 O -0.995 6.995 15 O -0.967 6.967 16 C -0.650 4.650 17 C 0.020 3.980 18 C -0.137 4.137 19 C 0.035 3.965 20 Cl -0.015 7.015 21 C -0.065 4.065 22 N 0.030 4.970 23 O -0.156 6.156 24 O -0.149 6.149 25 C 0.048 3.952 26 H 0.051 0.949 27 H 0.053 0.947 28 H 0.052 0.948 29 H 0.076 0.924 30 H 0.067 0.933 31 H 0.066 0.934 32 H 0.063 0.937 33 H 0.290 0.710 34 H 0.159 0.841 35 H 0.156 0.844 36 H 0.174 0.826 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -6.559 6.112 5.140 10.335 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.207 4.207 2 C -0.173 4.173 3 C 0.005 3.995 4 N -0.626 5.626 5 C -0.380 4.380 6 H 0.147 0.853 7 C -0.145 4.145 8 N -0.409 5.409 9 Si 0.675 3.325 10 H -0.193 1.193 11 H -0.192 1.192 12 H -0.171 1.171 13 S 2.574 3.426 14 O -0.985 6.985 15 O -0.957 6.957 16 C -0.723 4.723 17 C 0.001 3.999 18 C -0.156 4.156 19 C 0.007 3.993 20 Cl 0.015 6.985 21 C -0.150 4.150 22 N 0.550 4.450 23 O -0.371 6.371 24 O -0.367 6.367 25 C 0.028 3.972 26 H 0.070 0.930 27 H 0.072 0.928 28 H 0.071 0.929 29 H 0.095 0.905 30 H 0.086 0.914 31 H 0.085 0.915 32 H 0.081 0.919 33 H 0.101 0.899 34 H 0.176 0.824 35 H 0.174 0.826 36 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -6.915 5.437 6.190 10.756 hybrid contribution 0.107 2.250 -0.292 2.272 sum -6.808 7.688 5.898 11.842 Atomic orbital electron populations 1.21723 0.96139 1.01436 1.01353 1.21840 0.94748 0.97206 1.03497 1.21433 0.79562 0.97319 1.01226 1.54464 1.10826 1.74007 1.23326 1.19604 1.11588 1.22315 0.84538 0.85257 1.25982 0.95340 0.98030 0.95117 1.69913 1.36401 1.35989 0.98570 0.87279 0.80696 0.84338 0.80236 1.19286 1.19184 1.17086 1.15175 0.74409 0.76120 0.76898 1.93330 1.60344 1.81049 1.63767 1.93377 1.40294 1.75549 1.86479 1.33240 0.97919 1.34695 1.06487 1.21354 0.97989 0.92200 0.88359 1.21300 0.95794 0.95754 1.02796 1.20884 0.94179 0.87531 0.96746 1.98445 1.96699 1.09272 1.94121 1.21118 0.87350 0.94547 1.11964 1.43408 1.01941 1.00974 0.98658 1.94578 1.35639 1.64367 1.42493 1.94561 1.85600 0.97693 1.58820 1.20916 0.96931 0.90205 0.89196 0.92978 0.92754 0.92918 0.90494 0.91388 0.91534 0.91898 0.89857 0.82351 0.82604 0.80855 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 21. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -1.89 9.91 37.16 0.37 -1.52 16 2 C -0.13 -2.15 6.23 -26.73 -0.17 -2.32 16 3 C 0.13 2.28 3.94 -4.04 -0.02 2.27 16 4 N -0.81 -16.25 2.37 -59.91 -0.14 -16.39 16 5 C -0.22 -4.97 9.32 -15.06 -0.14 -5.11 16 6 H 0.13 3.13 7.70 -52.49 -0.40 2.72 16 7 C 0.08 1.70 5.08 -17.43 -0.09 1.61 16 8 N -0.78 -17.58 13.97 55.49 0.78 -16.80 16 9 Si 0.85 16.59 26.46 -169.99 -4.50 12.10 16 10 H -0.27 -5.53 7.11 56.52 0.40 -5.13 16 11 H -0.27 -5.04 7.11 56.52 0.40 -4.64 16 12 H -0.25 -4.41 5.89 56.52 0.33 -4.07 16 13 S 2.47 50.85 5.60 -107.50 -0.60 50.24 16 14 O -1.00 -20.94 16.25 -57.17 -0.93 -21.87 16 15 O -0.97 -22.82 16.26 -57.17 -0.93 -23.75 16 16 C -0.65 -11.81 5.97 -39.58 -0.24 -12.05 16 17 C 0.02 0.30 9.52 -39.59 -0.38 -0.07 16 18 C -0.14 -1.82 9.83 -39.55 -0.39 -2.21 16 19 C 0.04 0.55 6.32 -39.50 -0.25 0.30 16 20 Cl -0.01 -0.21 25.94 -51.86 -1.35 -1.55 16 21 C -0.07 -1.17 6.86 -79.91 -0.55 -1.71 16 22 N 0.03 0.57 4.45 33.98 0.15 0.72 16 23 O -0.16 -3.04 18.45 -29.46 -0.54 -3.58 16 24 O -0.15 -2.69 16.02 -29.46 -0.47 -3.16 16 25 C 0.05 0.89 9.03 -39.59 -0.36 0.53 16 26 H 0.05 0.62 8.14 -51.92 -0.42 0.19 16 27 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 28 H 0.05 0.62 8.14 -51.93 -0.42 0.20 16 29 H 0.08 1.29 8.14 -51.92 -0.42 0.87 16 30 H 0.07 1.15 8.14 -51.93 -0.42 0.73 16 31 H 0.07 1.03 7.60 -51.93 -0.39 0.64 16 32 H 0.06 1.07 4.50 -51.93 -0.23 0.84 16 33 H 0.29 6.01 8.31 -40.82 -0.34 5.67 16 34 H 0.16 2.00 7.62 -52.49 -0.40 1.60 16 35 H 0.16 1.47 8.06 -52.49 -0.42 1.05 16 36 H 0.17 3.30 7.16 -52.49 -0.38 2.93 16 LS Contribution 339.55 15.07 5.12 5.12 Total: -1.00 -26.26 339.55 -9.17 -35.43 By element: Atomic # 1 Polarization: 7.35 SS G_CDS: -3.55 Total: 3.80 kcal Atomic # 6 Polarization: -18.08 SS G_CDS: -2.20 Total: -20.28 kcal Atomic # 7 Polarization: -33.26 SS G_CDS: 0.78 Total: -32.48 kcal Atomic # 8 Polarization: -49.49 SS G_CDS: -2.87 Total: -52.37 kcal Atomic # 14 Polarization: 16.59 SS G_CDS: -4.50 Total: 12.10 kcal Atomic # 16 Polarization: 50.85 SS G_CDS: -0.60 Total: 50.24 kcal Atomic # 17 Polarization: -0.21 SS G_CDS: -1.35 Total: -1.55 kcal Total LS contribution 5.12 Total: 5.12 kcal Total: -26.26 -9.17 -35.43 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -7.613 kcal (2) G-P(sol) polarization free energy of solvation -26.259 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -33.872 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.166 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -35.425 kcal (6) G-S(sol) free energy of system = (1) + (5) -43.039 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds