Wall clock time and date at job start Wed Apr 1 2020 05:39:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52998 * 1 3 3 C 1.52995 * 109.47366 * 2 1 4 4 N 1.46502 * 109.47144 * 174.58023 * 3 2 1 5 5 C 1.36929 * 120.00127 * 84.77269 * 4 3 2 6 6 H 1.07998 * 120.00069 * 221.11290 * 5 4 3 7 7 C 1.38813 * 120.00219 * 40.83972 * 5 4 3 8 8 N 1.31619 * 120.00096 * 213.10622 * 7 5 4 9 9 Si 1.86802 * 119.99814 * 33.10634 * 7 5 4 10 10 H 1.48493 * 109.47099 * 91.52301 * 9 7 5 11 11 H 1.48502 * 109.46869 * 211.52184 * 9 7 5 12 12 H 1.48497 * 109.47155 * 331.51842 * 9 7 5 13 13 S 1.65603 * 119.99709 * 264.77063 * 4 3 2 14 14 O 1.42105 * 106.40079 * 23.54283 * 13 4 3 15 15 O 1.42100 * 106.39938 * 156.45752 * 13 4 3 16 16 C 1.76196 * 107.21686 * 270.00062 * 13 4 3 17 17 C 1.38270 * 119.98486 * 90.00223 * 16 13 4 18 18 C 1.38196 * 120.01140 * 179.97438 * 17 16 13 19 19 C 1.38375 * 119.98670 * 0.02732 * 18 17 16 20 20 Cl 1.73600 * 120.01185 * 180.02562 * 19 18 17 21 21 C 1.38329 * 119.97102 * 359.97438 * 19 18 17 22 22 N 1.48020 * 120.00423 * 179.97438 * 21 19 18 23 23 O 1.21807 * 120.00506 * 180.02562 * 22 21 19 24 24 O 1.21802 * 120.00001 * 0.02562 * 22 21 19 25 25 C 1.38213 * 119.98655 * 269.72346 * 16 13 4 26 26 H 1.09007 * 109.47210 * 59.02012 * 1 2 3 27 27 H 1.09002 * 109.47283 * 179.01975 * 1 2 3 28 28 H 1.09001 * 109.47290 * 299.02005 * 1 2 3 29 29 H 1.09007 * 109.46964 * 239.99503 * 2 1 3 30 30 H 1.08997 * 109.46814 * 120.00207 * 2 1 3 31 31 H 1.08997 * 109.47033 * 54.57364 * 3 2 1 32 32 H 1.09006 * 109.46976 * 294.57644 * 3 2 1 33 33 H 0.96995 * 120.00030 * 179.97438 * 8 7 5 34 34 H 1.08001 * 119.99613 * 0.02562 * 17 16 13 35 35 H 1.07994 * 120.00437 * 180.02562 * 18 17 16 36 36 H 1.08001 * 119.99715 * 359.97438 * 25 16 13 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0400 1.4424 0.0000 4 7 3.4992 1.4444 0.1305 5 6 4.2862 1.3002 -0.9808 6 1 5.1673 0.6769 -0.9413 7 6 3.9484 1.9505 -2.1597 8 7 4.2184 1.3916 -3.3203 9 14 3.1106 3.6191 -2.0989 10 1 4.1383 4.6904 -2.1317 11 1 2.2082 3.7627 -3.2695 12 1 2.3192 3.7303 -0.8473 13 16 4.1969 1.6212 1.6219 14 8 3.2273 1.1986 2.5710 15 8 5.4940 1.0486 1.5285 16 6 4.4327 3.3472 1.8861 17 6 3.4390 4.0960 2.4893 18 6 3.6236 5.4497 2.6973 19 6 4.8028 6.0558 2.3013 20 17 5.0356 7.7561 2.5628 21 6 5.7964 5.3061 1.6979 22 7 7.0579 5.9538 1.2734 23 8 7.9326 5.2937 0.7416 24 8 7.2212 7.1469 1.4559 25 6 5.6130 3.9509 1.4956 26 1 -0.3634 0.5290 -0.8811 27 1 -0.3634 -1.0275 -0.0176 28 1 -0.3634 0.4985 0.8986 29 1 1.8933 -0.5139 -0.8900 30 1 1.8932 -0.5139 0.8900 31 1 1.5995 1.9835 0.8374 32 1 1.7582 1.9275 -0.9346 33 1 3.9820 1.8459 -4.1441 34 1 2.5189 3.6228 2.7988 35 1 2.8476 6.0344 3.1688 36 1 6.3908 3.3646 1.0290 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000045092440.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:39:34 Heat of formation + Delta-G solvation = -58.131050 kcal Electronic energy + Delta-G solvation = -27158.165353 eV Core-core repulsion = 22991.899897 eV Total energy + Delta-G solvation = -4166.265456 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.93 seconds Orbital eigenvalues (eV) -43.48974 -40.67612 -38.32273 -38.16846 -37.91365 -37.74108 -36.50813 -34.75749 -33.41554 -33.22365 -32.57901 -27.91357 -27.67988 -25.71953 -24.80746 -23.98174 -22.57529 -21.20186 -20.20291 -19.96483 -18.96890 -18.89954 -18.38948 -18.26169 -17.61678 -17.41697 -17.09799 -16.00274 -15.63289 -15.55726 -15.22707 -15.03623 -14.91359 -14.42040 -14.23722 -13.71122 -13.58220 -13.45148 -13.41902 -13.15277 -12.91175 -12.80526 -12.78110 -12.68873 -12.46268 -12.43850 -12.32665 -12.04195 -12.01166 -11.85501 -11.70749 -11.39341 -11.05524 -10.96435 -10.63846 -10.02576 -8.82162 -6.19767 -1.55238 -0.81847 -0.35272 -0.02755 0.00322 0.44788 1.18005 1.31999 1.34489 1.64965 2.03862 2.28421 2.63772 2.86106 2.99073 3.20309 3.43873 3.62498 3.79177 4.06408 4.09895 4.17169 4.26167 4.31291 4.48456 4.59636 4.61566 4.79229 4.85724 5.01629 5.09621 5.20810 5.33192 5.33747 5.46894 5.63265 6.14246 6.31640 6.72411 6.91609 8.27535 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012878 B = 0.004869 C = 0.004492 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2173.674587 B = 5749.863381 C = 6231.875888 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C -0.135 4.135 3 C 0.116 3.884 4 N -0.815 5.815 5 C -0.262 4.262 6 H 0.086 0.914 7 C 0.056 3.944 8 N -0.827 5.827 9 Si 0.886 3.114 10 H -0.289 1.289 11 H -0.257 1.257 12 H -0.213 1.213 13 S 2.524 3.476 14 O -0.992 6.992 15 O -1.004 7.004 16 C -0.672 4.672 17 C 0.033 3.967 18 C -0.113 4.113 19 C 0.039 3.961 20 Cl 0.008 6.992 21 C -0.082 4.082 22 N 0.029 4.971 23 O -0.206 6.206 24 O -0.120 6.120 25 C 0.034 3.966 26 H 0.062 0.938 27 H 0.065 0.935 28 H 0.067 0.933 29 H 0.056 0.944 30 H 0.054 0.946 31 H 0.095 0.905 32 H 0.068 0.932 33 H 0.294 0.706 34 H 0.194 0.806 35 H 0.211 0.789 36 H 0.153 0.847 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.959 8.969 7.945 15.580 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.201 4.201 2 C -0.174 4.174 3 C -0.009 4.009 4 N -0.639 5.639 5 C -0.413 4.413 6 H 0.104 0.896 7 C -0.163 4.163 8 N -0.461 5.461 9 Si 0.707 3.293 10 H -0.216 1.216 11 H -0.181 1.181 12 H -0.135 1.135 13 S 2.627 3.373 14 O -0.982 6.982 15 O -0.994 6.994 16 C -0.750 4.750 17 C 0.014 3.986 18 C -0.132 4.132 19 C 0.010 3.990 20 Cl 0.038 6.962 21 C -0.167 4.167 22 N 0.546 4.454 23 O -0.408 6.408 24 O -0.347 6.347 25 C 0.014 3.986 26 H 0.081 0.919 27 H 0.084 0.916 28 H 0.086 0.914 29 H 0.075 0.925 30 H 0.073 0.927 31 H 0.113 0.887 32 H 0.086 0.914 33 H 0.104 0.896 34 H 0.211 0.789 35 H 0.228 0.772 36 H 0.171 0.829 Dipole moment (debyes) X Y Z Total from point charges -10.279 8.144 8.872 15.834 hybrid contribution 1.168 1.578 -0.758 2.105 sum -9.111 9.723 8.114 15.601 Atomic orbital electron populations 1.21703 0.93072 1.02722 1.02611 1.21840 0.97414 0.96271 1.01914 1.21816 0.77953 0.98514 1.02650 1.53973 1.11881 1.76064 1.22005 1.18962 1.11381 1.24743 0.86249 0.89623 1.26273 0.95811 0.99812 0.94358 1.69965 1.39578 1.37309 0.99217 0.86745 0.80003 0.80405 0.82154 1.21559 1.18097 1.13457 1.11851 0.73353 0.76084 0.76003 1.93353 1.60199 1.81435 1.63212 1.93365 1.42163 1.76901 1.87010 1.32640 0.99554 1.32925 1.09896 1.21842 0.97746 0.92945 0.86107 1.21868 0.95601 0.95140 1.00552 1.21232 0.93944 0.88570 0.95223 1.98465 1.96663 1.07383 1.93707 1.21171 0.87534 0.94545 1.13436 1.43583 1.02320 1.00989 0.98485 1.94602 1.36714 1.64628 1.44880 1.94512 1.85427 0.97642 1.57113 1.20748 0.96997 0.90998 0.89841 0.91935 0.91591 0.91372 0.92476 0.92708 0.88698 0.91363 0.89573 0.78910 0.77245 0.82927 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 30. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -3.26 9.91 71.98 0.71 -2.55 16 2 C -0.13 -4.24 6.23 30.59 0.19 -4.05 16 3 C 0.12 3.84 3.94 86.38 0.34 4.18 16 4 N -0.82 -33.10 2.37 -343.46 -0.81 -33.92 16 5 C -0.26 -12.40 9.32 84.04 0.78 -11.61 16 6 H 0.09 4.64 7.70 -2.91 -0.02 4.62 16 7 C 0.06 2.55 5.08 84.86 0.43 2.98 16 8 N -0.83 -40.09 13.97 21.65 0.30 -39.79 16 9 Si 0.89 33.68 26.46 68.60 1.81 35.50 16 10 H -0.29 -11.91 7.11 99.48 0.71 -11.21 16 11 H -0.26 -9.24 7.11 99.48 0.71 -8.53 16 12 H -0.21 -6.76 5.89 99.48 0.59 -6.17 16 13 S 2.52 102.25 5.60 -56.49 -0.32 101.93 16 14 O -0.99 -39.11 16.25 -128.00 -2.08 -41.19 16 15 O -1.00 -49.12 16.26 -128.00 -2.08 -51.20 16 16 C -0.67 -22.94 5.97 22.27 0.13 -22.81 16 17 C 0.03 0.80 9.52 22.27 0.21 1.01 16 18 C -0.11 -2.29 9.83 22.29 0.22 -2.07 16 19 C 0.04 1.05 6.32 22.32 0.14 1.19 16 20 Cl 0.01 0.18 25.94 -2.72 -0.07 0.11 16 21 C -0.08 -2.80 6.86 36.40 0.25 -2.55 16 22 N 0.03 1.06 4.45 -46.41 -0.21 0.86 16 23 O -0.21 -8.35 18.45 18.88 0.35 -8.00 16 24 O -0.12 -4.10 16.02 18.88 0.30 -3.80 16 25 C 0.03 1.28 9.03 22.26 0.20 1.48 16 26 H 0.06 1.30 8.14 -2.38 -0.02 1.28 16 27 H 0.07 1.34 8.14 -2.39 -0.02 1.33 16 28 H 0.07 1.35 8.14 -2.39 -0.02 1.33 16 29 H 0.06 1.99 8.14 -2.38 -0.02 1.97 16 30 H 0.05 1.83 8.14 -2.39 -0.02 1.81 16 31 H 0.09 2.55 7.60 -2.39 -0.02 2.53 16 32 H 0.07 2.20 4.50 -2.38 -0.01 2.19 16 33 H 0.29 12.96 8.31 -92.71 -0.77 12.19 16 34 H 0.19 3.49 7.62 -2.91 -0.02 3.47 16 35 H 0.21 2.12 8.06 -2.91 -0.02 2.10 16 36 H 0.15 6.22 7.16 -2.91 -0.02 6.20 16 Total: -1.00 -61.02 339.55 1.83 -59.19 By element: Atomic # 1 Polarization: 14.09 SS G_CDS: 1.01 Total: 15.10 kcal Atomic # 6 Polarization: -38.41 SS G_CDS: 3.61 Total: -34.79 kcal Atomic # 7 Polarization: -72.13 SS G_CDS: -0.72 Total: -72.85 kcal Atomic # 8 Polarization: -100.68 SS G_CDS: -3.51 Total: -104.19 kcal Atomic # 14 Polarization: 33.68 SS G_CDS: 1.81 Total: 35.50 kcal Atomic # 16 Polarization: 102.25 SS G_CDS: -0.32 Total: 101.93 kcal Atomic # 17 Polarization: 0.18 SS G_CDS: -0.07 Total: 0.11 kcal Total: -61.02 1.83 -59.19 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000045092440.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 1.058 kcal (2) G-P(sol) polarization free energy of solvation -61.016 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -59.958 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.827 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.189 kcal (6) G-S(sol) free energy of system = (1) + (5) -58.131 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.93 seconds