Wall clock time and date at job start Wed Apr 1 2020 05:38:35 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47567 * 2 1 4 4 H 1.09000 * 109.46790 * 54.80583 * 3 2 1 5 5 C 1.50702 * 109.47173 * 174.80814 * 3 2 1 6 6 H 1.07997 * 119.99775 * 120.00200 * 5 3 2 7 7 C 1.37870 * 120.00017 * 299.99624 * 5 3 2 8 8 N 1.31521 * 120.00305 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99979 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46986 * 120.00561 * 9 7 5 12 12 H 1.48497 * 109.47427 * 240.00382 * 9 7 5 13 13 N 1.46504 * 109.47034 * 294.81184 * 3 2 1 14 14 S 1.65596 * 119.99816 * 145.86136 * 13 3 2 15 15 O 1.42096 * 106.40461 * 47.32581 * 14 13 3 16 16 O 1.42100 * 106.40154 * 180.24499 * 14 13 3 17 17 C 1.76201 * 107.22100 * 293.78357 * 14 13 3 18 18 C 1.38232 * 120.00720 * 114.07597 * 17 14 13 19 19 C 1.38228 * 120.01342 * 179.77535 * 18 17 14 20 20 C 1.38266 * 120.02253 * 0.50639 * 19 18 17 21 21 N 1.48016 * 119.99033 * 179.72730 * 20 19 18 22 22 O 1.21802 * 120.00290 * 180.02562 * 21 20 19 23 23 O 1.21806 * 120.00073 * 0.02562 * 21 20 19 24 24 C 1.38191 * 120.01450 * 359.74703 * 20 19 18 25 25 C 1.38335 * 120.00382 * 294.35926 * 17 14 13 26 26 Cl 1.73594 * 120.01466 * 359.97438 * 25 17 14 27 27 H 1.08991 * 109.47529 * 175.91357 * 1 2 3 28 28 H 1.09000 * 109.46786 * 55.91343 * 1 2 3 29 29 H 1.08996 * 109.46909 * 295.91838 * 1 2 3 30 30 H 1.09001 * 109.46923 * 120.00205 * 2 1 3 31 31 H 1.08999 * 109.46961 * 239.99833 * 2 1 3 32 32 H 0.97000 * 120.00360 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99751 * 325.85802 * 13 3 2 34 34 H 1.08003 * 119.99143 * 0.02562 * 18 17 14 35 35 H 1.08000 * 119.98628 * 180.25236 * 19 18 17 36 36 H 1.08004 * 120.00633 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9824 0.8398 5 6 3.5416 1.4443 0.1286 6 1 4.1494 1.8880 -0.6461 7 6 4.1394 0.8797 1.2352 8 7 3.3994 0.3390 2.1785 9 14 6.0006 0.8813 1.3942 10 1 6.5982 1.5451 0.2079 11 1 6.3918 1.6183 2.6227 12 1 6.4915 -0.5176 1.4789 13 7 1.6565 2.0961 -1.2538 14 16 1.2806 3.7088 -1.2654 15 8 2.3086 4.3658 -0.5369 16 8 0.9503 4.0341 -2.6087 17 6 -0.1981 3.9066 -0.3277 18 6 -0.1733 4.6101 0.8619 19 6 -1.3341 4.7693 1.5953 20 6 -2.5185 4.2161 1.1447 21 7 -3.7598 4.3819 1.9336 22 8 -4.8032 3.8943 1.5371 23 8 -3.7381 5.0060 2.9794 24 6 -2.5434 3.5082 -0.0419 25 6 -1.3827 3.3529 -0.7791 26 17 -1.4131 2.4636 -2.2696 27 1 -0.3634 -1.0249 -0.0732 28 1 -0.3633 0.5760 -0.8511 29 1 -0.3633 0.4492 0.9243 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8200 -0.0586 2.9569 33 1 1.6227 1.5842 -2.0770 34 1 0.7524 5.0388 1.2164 35 1 -1.3151 5.3225 2.5227 36 1 -3.4687 3.0765 -0.3939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000054178769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:35 Heat of formation + Delta-G solvation = -53.390493 kcal Electronic energy + Delta-G solvation = -26981.848720 eV Core-core repulsion = 22815.788830 eV Total energy + Delta-G solvation = -4166.059890 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.65 seconds Orbital eigenvalues (eV) -42.50373 -39.81357 -37.26433 -36.87022 -36.80857 -36.13717 -35.55384 -32.59537 -32.33112 -31.61077 -30.82199 -27.18582 -26.79094 -23.73622 -23.18669 -23.11386 -20.39663 -19.81714 -19.52392 -18.99913 -17.97410 -17.84874 -17.18531 -16.59531 -16.30711 -15.82909 -15.39077 -14.68291 -14.65706 -14.42792 -14.15431 -13.83248 -13.25844 -13.11874 -12.38716 -12.29300 -12.05508 -11.92805 -11.82997 -11.81865 -11.67449 -11.60951 -11.48462 -11.40840 -11.33192 -11.09371 -10.98300 -10.89634 -10.36647 -10.30587 -10.02183 -9.93744 -9.85952 -9.51511 -8.55537 -8.46187 -6.19343 -4.26568 -0.77341 0.36390 0.57325 0.82374 0.88221 1.50924 2.56863 3.22469 3.31128 3.33322 3.38790 3.82735 3.94314 4.08987 4.21571 4.32863 4.54249 4.77432 4.98188 5.03665 5.11284 5.16283 5.36406 5.71472 5.92425 6.00312 6.03854 6.10944 6.29896 6.62538 6.75113 6.91635 7.32041 7.38754 7.48494 7.71283 7.91220 8.08639 8.77303 9.40675 10.85138 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.004344 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.892200 B = 6444.549916 C = 7029.228516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.154 4.154 2 C -0.126 4.126 3 C 0.280 3.720 4 H 0.039 0.961 5 C -0.521 4.521 6 H 0.067 0.933 7 C 0.065 3.935 8 N -0.892 5.892 9 Si 0.898 3.102 10 H -0.271 1.271 11 H -0.282 1.282 12 H -0.284 1.284 13 N -1.088 6.088 14 S 2.679 3.321 15 O -0.929 6.929 16 O -0.959 6.959 17 C -0.623 4.623 18 C -0.002 4.002 19 C -0.071 4.071 20 C 0.009 3.991 21 N 0.024 4.976 22 O -0.148 6.148 23 O -0.144 6.144 24 C -0.072 4.072 25 C 0.053 3.947 26 Cl -0.009 7.009 27 H 0.039 0.961 28 H 0.041 0.959 29 H 0.039 0.961 30 H 0.108 0.892 31 H 0.044 0.956 32 H 0.264 0.736 33 H 0.410 0.590 34 H 0.179 0.821 35 H 0.169 0.831 36 H 0.169 0.831 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -10.482 4.824 -3.856 12.167 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.212 4.212 2 C -0.166 4.166 3 C 0.176 3.824 4 H 0.057 0.943 5 C -0.561 4.561 6 H 0.085 0.915 7 C -0.138 4.138 8 N -0.531 5.531 9 Si 0.726 3.274 10 H -0.195 1.195 11 H -0.208 1.208 12 H -0.210 1.210 13 N -0.851 5.851 14 S 2.761 3.239 15 O -0.919 6.919 16 O -0.948 6.948 17 C -0.703 4.703 18 C -0.021 4.021 19 C -0.091 4.091 20 C -0.074 4.074 21 N 0.546 4.454 22 O -0.366 6.366 23 O -0.362 6.362 24 C -0.092 4.092 25 C 0.024 3.976 26 Cl 0.021 6.979 27 H 0.058 0.942 28 H 0.060 0.940 29 H 0.058 0.942 30 H 0.126 0.874 31 H 0.063 0.937 32 H 0.074 0.926 33 H 0.245 0.755 34 H 0.196 0.804 35 H 0.186 0.814 36 H 0.187 0.813 Dipole moment (debyes) X Y Z Total from point charges -9.461 5.352 -4.402 11.727 hybrid contribution -0.131 -0.630 0.461 0.792 sum -9.591 4.722 -3.941 11.394 Atomic orbital electron populations 1.21934 0.99174 0.99935 1.00137 1.21881 0.91827 0.99204 1.03662 1.18636 0.95219 0.90334 0.78185 0.94322 1.21518 0.90919 1.37712 1.05933 0.91488 1.24893 0.98673 0.94795 0.95391 1.69837 1.35132 1.38539 1.09597 0.86430 0.85010 0.77630 0.78349 1.19539 1.20847 1.21002 1.55533 1.82167 1.28465 1.18939 1.02753 0.73456 0.74322 0.73410 1.93641 1.51053 1.73514 1.73685 1.93602 1.84642 1.83457 1.33127 1.32124 1.20513 1.06419 1.11262 1.21167 0.99166 0.92005 0.89789 1.21326 0.89687 0.96948 1.01157 1.21170 0.85710 1.05674 0.94831 1.43540 1.02316 0.98772 1.00726 1.94563 1.19155 1.49115 1.73761 1.94567 1.92305 1.38813 1.10556 1.20857 0.99753 0.96737 0.91900 1.20152 0.92722 0.94738 0.89970 1.98476 1.98416 1.72144 1.28849 0.94219 0.93960 0.94156 0.87402 0.93702 0.92624 0.75516 0.80384 0.81393 0.81343 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 20. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.58 9.85 37.16 0.37 -2.21 16 2 C -0.13 -2.52 5.37 -26.73 -0.14 -2.66 16 3 C 0.28 5.94 2.14 -69.08 -0.15 5.79 16 4 H 0.04 0.87 7.92 -51.93 -0.41 0.46 16 5 C -0.52 -12.91 8.84 -34.44 -0.30 -13.21 16 6 H 0.07 1.69 7.81 -52.49 -0.41 1.28 16 7 C 0.06 1.64 5.29 -17.82 -0.09 1.54 16 8 N -0.89 -23.00 11.29 55.43 0.63 -22.37 16 9 Si 0.90 20.18 29.54 -169.99 -5.02 15.16 16 10 H -0.27 -6.09 7.11 56.52 0.40 -5.69 16 11 H -0.28 -6.38 7.11 56.52 0.40 -5.97 16 12 H -0.28 -6.31 7.11 56.52 0.40 -5.91 16 13 N -1.09 -19.27 4.70 -5.88 -0.03 -19.29 16 14 S 2.68 45.74 4.99 -107.50 -0.54 45.21 16 15 O -0.93 -18.56 16.70 -57.17 -0.95 -19.51 16 16 O -0.96 -16.81 16.44 -57.17 -0.94 -17.75 16 17 C -0.62 -9.02 5.83 -39.55 -0.23 -9.25 16 18 C 0.00 -0.02 9.55 -39.59 -0.38 -0.40 16 19 C -0.07 -0.82 9.55 -39.57 -0.38 -1.19 16 20 C 0.01 0.11 6.85 -79.95 -0.55 -0.44 16 21 N 0.02 0.32 4.45 33.96 0.15 0.47 16 22 O -0.15 -2.01 18.45 -29.46 -0.54 -2.56 16 23 O -0.14 -1.95 18.45 -29.46 -0.54 -2.49 16 24 C -0.07 -0.86 9.34 -39.55 -0.37 -1.23 16 25 C 0.05 0.71 6.30 -39.49 -0.25 0.46 16 26 Cl -0.01 -0.11 24.91 -51.86 -1.29 -1.40 16 27 H 0.04 0.60 8.14 -51.93 -0.42 0.18 16 28 H 0.04 0.62 5.98 -51.93 -0.31 0.31 16 29 H 0.04 0.68 8.14 -51.93 -0.42 0.26 16 30 H 0.11 2.48 5.95 -51.93 -0.31 2.18 16 31 H 0.04 0.86 8.14 -51.93 -0.42 0.44 16 32 H 0.26 6.54 8.31 -40.82 -0.34 6.20 16 33 H 0.41 6.38 8.83 -34.47 -0.30 6.07 16 34 H 0.18 2.07 7.33 -52.48 -0.38 1.68 16 35 H 0.17 1.50 7.61 -52.49 -0.40 1.10 16 36 H 0.17 1.67 7.61 -52.48 -0.40 1.27 16 LS Contribution 341.93 15.07 5.15 5.15 Total: -1.00 -28.61 341.93 -9.74 -38.34 By element: Atomic # 1 Polarization: 7.19 SS G_CDS: -3.33 Total: 3.86 kcal Atomic # 6 Polarization: -20.34 SS G_CDS: -2.48 Total: -22.82 kcal Atomic # 7 Polarization: -41.95 SS G_CDS: 0.75 Total: -41.20 kcal Atomic # 8 Polarization: -39.32 SS G_CDS: -2.98 Total: -42.31 kcal Atomic # 14 Polarization: 20.18 SS G_CDS: -5.02 Total: 15.16 kcal Atomic # 16 Polarization: 45.74 SS G_CDS: -0.54 Total: 45.21 kcal Atomic # 17 Polarization: -0.11 SS G_CDS: -1.29 Total: -1.40 kcal Total LS contribution 5.15 Total: 5.15 kcal Total: -28.61 -9.74 -38.34 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -15.046 kcal (2) G-P(sol) polarization free energy of solvation -28.607 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -43.653 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -9.737 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -38.344 kcal (6) G-S(sol) free energy of system = (1) + (5) -53.390 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.66 seconds