Wall clock time and date at job start Wed Apr 1 2020 05:38:34 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52999 * 1 3 3 C 1.53002 * 109.47567 * 2 1 4 4 H 1.09000 * 109.46790 * 54.80583 * 3 2 1 5 5 C 1.50702 * 109.47173 * 174.80814 * 3 2 1 6 6 H 1.07997 * 119.99775 * 120.00200 * 5 3 2 7 7 C 1.37870 * 120.00017 * 299.99624 * 5 3 2 8 8 N 1.31521 * 120.00305 * 0.02562 * 7 5 3 9 9 Si 1.86795 * 119.99979 * 179.97438 * 7 5 3 10 10 H 1.48496 * 109.47186 * 0.02562 * 9 7 5 11 11 H 1.48502 * 109.46986 * 120.00561 * 9 7 5 12 12 H 1.48497 * 109.47427 * 240.00382 * 9 7 5 13 13 N 1.46504 * 109.47034 * 294.81184 * 3 2 1 14 14 S 1.65596 * 119.99816 * 145.86136 * 13 3 2 15 15 O 1.42096 * 106.40461 * 47.32581 * 14 13 3 16 16 O 1.42100 * 106.40154 * 180.24499 * 14 13 3 17 17 C 1.76201 * 107.22100 * 293.78357 * 14 13 3 18 18 C 1.38232 * 120.00720 * 114.07597 * 17 14 13 19 19 C 1.38228 * 120.01342 * 179.77535 * 18 17 14 20 20 C 1.38266 * 120.02253 * 0.50639 * 19 18 17 21 21 N 1.48016 * 119.99033 * 179.72730 * 20 19 18 22 22 O 1.21802 * 120.00290 * 180.02562 * 21 20 19 23 23 O 1.21806 * 120.00073 * 0.02562 * 21 20 19 24 24 C 1.38191 * 120.01450 * 359.74703 * 20 19 18 25 25 C 1.38335 * 120.00382 * 294.35926 * 17 14 13 26 26 Cl 1.73594 * 120.01466 * 359.97438 * 25 17 14 27 27 H 1.08991 * 109.47529 * 175.91357 * 1 2 3 28 28 H 1.09000 * 109.46786 * 55.91343 * 1 2 3 29 29 H 1.08996 * 109.46909 * 295.91838 * 1 2 3 30 30 H 1.09001 * 109.46923 * 120.00205 * 2 1 3 31 31 H 1.08999 * 109.46961 * 239.99833 * 2 1 3 32 32 H 0.97000 * 120.00360 * 179.97438 * 8 7 5 33 33 H 0.96998 * 119.99751 * 325.85802 * 13 3 2 34 34 H 1.08003 * 119.99143 * 0.02562 * 18 17 14 35 35 H 1.08000 * 119.98628 * 180.25236 * 19 18 17 36 36 H 1.08004 * 120.00633 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 6 2.0401 1.4425 0.0000 4 1 1.6028 1.9824 0.8398 5 6 3.5416 1.4443 0.1286 6 1 4.1494 1.8880 -0.6461 7 6 4.1394 0.8797 1.2352 8 7 3.3994 0.3390 2.1785 9 14 6.0006 0.8813 1.3942 10 1 6.5982 1.5451 0.2079 11 1 6.3918 1.6183 2.6227 12 1 6.4915 -0.5176 1.4789 13 7 1.6565 2.0961 -1.2538 14 16 1.2806 3.7088 -1.2654 15 8 2.3086 4.3658 -0.5369 16 8 0.9503 4.0341 -2.6087 17 6 -0.1981 3.9066 -0.3277 18 6 -0.1733 4.6101 0.8619 19 6 -1.3341 4.7693 1.5953 20 6 -2.5185 4.2161 1.1447 21 7 -3.7598 4.3819 1.9336 22 8 -4.8032 3.8943 1.5371 23 8 -3.7381 5.0060 2.9794 24 6 -2.5434 3.5082 -0.0419 25 6 -1.3827 3.3529 -0.7791 26 17 -1.4131 2.4636 -2.2696 27 1 -0.3634 -1.0249 -0.0732 28 1 -0.3633 0.5760 -0.8511 29 1 -0.3633 0.4492 0.9243 30 1 1.8933 -0.5139 0.8900 31 1 1.8933 -0.5139 -0.8900 32 1 3.8200 -0.0586 2.9569 33 1 1.6227 1.5842 -2.0770 34 1 0.7524 5.0388 1.2164 35 1 -1.3151 5.3225 2.5227 36 1 -3.4687 3.0765 -0.3939 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000054178769.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:38:34 Heat of formation + Delta-G solvation = -70.616126 kcal Electronic energy + Delta-G solvation = -26982.595680 eV Core-core repulsion = 22815.788830 eV Total energy + Delta-G solvation = -4166.806849 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.58 seconds Orbital eigenvalues (eV) -43.52212 -40.82887 -38.51410 -38.07731 -37.89371 -37.69689 -37.00140 -34.17040 -33.62955 -32.60386 -32.30099 -28.55808 -28.22609 -24.95877 -24.64076 -24.17520 -21.98779 -20.85108 -20.80654 -20.02208 -19.28463 -18.87129 -18.76690 -18.14863 -17.58325 -16.94037 -16.79835 -16.24728 -15.70972 -15.57936 -15.41608 -15.14817 -14.84098 -14.61873 -13.66895 -13.47641 -13.34587 -13.27769 -13.20064 -13.12671 -13.00497 -12.90837 -12.74576 -12.70803 -12.67743 -12.61079 -12.44969 -12.17209 -12.06849 -11.66405 -11.58916 -11.52638 -11.31089 -10.50694 -10.44387 -10.10114 -8.10181 -6.22051 -1.81969 -0.77213 -0.61001 -0.23335 -0.13665 0.48401 1.42565 1.47485 1.54412 1.57028 1.99461 2.45582 2.57118 2.86153 3.12173 3.17767 3.20804 3.54346 3.63976 3.88214 4.10693 4.18229 4.37461 4.41936 4.57080 4.65419 4.72763 4.83254 5.03131 5.09081 5.31951 5.35990 5.68751 5.78786 5.99667 6.25534 6.27053 6.38846 6.84753 7.46991 8.92192 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.012806 B = 0.004344 C = 0.003982 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 2185.892200 B = 6444.549916 C = 7029.228516 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.146 4.146 2 C -0.121 4.121 3 C 0.287 3.713 4 H 0.026 0.974 5 C -0.537 4.537 6 H 0.054 0.946 7 C 0.025 3.975 8 N -0.910 5.910 9 Si 0.943 3.057 10 H -0.273 1.273 11 H -0.283 1.283 12 H -0.278 1.278 13 N -1.088 6.088 14 S 2.693 3.307 15 O -0.965 6.965 16 O -0.965 6.965 17 C -0.633 4.633 18 C -0.007 4.007 19 C -0.059 4.059 20 C 0.006 3.994 21 N 0.024 4.976 22 O -0.153 6.153 23 O -0.148 6.148 24 C -0.064 4.064 25 C 0.047 3.953 26 Cl -0.006 7.006 27 H 0.055 0.945 28 H 0.060 0.940 29 H 0.034 0.966 30 H 0.078 0.922 31 H 0.048 0.952 32 H 0.264 0.736 33 H 0.420 0.580 34 H 0.186 0.814 35 H 0.195 0.805 36 H 0.190 0.810 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -11.675 4.953 -3.907 13.271 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.204 4.204 2 C -0.161 4.161 3 C 0.182 3.818 4 H 0.044 0.956 5 C -0.576 4.576 6 H 0.073 0.927 7 C -0.175 4.175 8 N -0.549 5.549 9 Si 0.770 3.230 10 H -0.198 1.198 11 H -0.209 1.209 12 H -0.204 1.204 13 N -0.851 5.851 14 S 2.779 3.221 15 O -0.955 6.955 16 O -0.955 6.955 17 C -0.717 4.717 18 C -0.026 4.026 19 C -0.079 4.079 20 C -0.077 4.077 21 N 0.546 4.454 22 O -0.370 6.370 23 O -0.366 6.366 24 C -0.084 4.084 25 C 0.018 3.982 26 Cl 0.024 6.976 27 H 0.074 0.926 28 H 0.079 0.921 29 H 0.053 0.947 30 H 0.096 0.904 31 H 0.067 0.933 32 H 0.073 0.927 33 H 0.256 0.744 34 H 0.203 0.797 35 H 0.212 0.788 36 H 0.207 0.793 Dipole moment (debyes) X Y Z Total from point charges -10.624 5.467 -4.494 12.765 hybrid contribution 0.168 -0.613 0.476 0.794 sum -10.456 4.854 -4.018 12.208 Atomic orbital electron populations 1.21842 0.96508 1.01334 1.00692 1.21712 0.94198 0.97857 1.02365 1.18331 0.93236 0.91158 0.79033 0.95598 1.21834 0.93021 1.37234 1.05549 0.92738 1.25455 1.01599 0.94935 0.95484 1.69929 1.36056 1.39116 1.09843 0.85733 0.81688 0.77675 0.77929 1.19799 1.20884 1.20420 1.55304 1.82826 1.28625 1.18369 1.01955 0.73544 0.73529 0.73102 1.93598 1.53424 1.74120 1.74319 1.93590 1.84910 1.83288 1.33708 1.31659 1.19494 1.08479 1.12110 1.21335 1.00116 0.91807 0.89367 1.21570 0.88686 0.96060 1.01576 1.21286 0.85626 1.05837 0.94931 1.43613 1.02439 0.98633 1.00702 1.94565 1.19431 1.49223 1.73789 1.94569 1.92375 1.38899 1.10726 1.21038 1.00024 0.95978 0.91366 1.20175 0.92705 0.95013 0.90319 1.98477 1.98391 1.72055 1.28685 0.92595 0.92128 0.94657 0.90363 0.93320 0.92676 0.74442 0.79653 0.78794 0.79253 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 17. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -4.65 9.85 71.98 0.71 -3.94 16 2 C -0.12 -4.81 5.37 30.59 0.16 -4.64 16 3 C 0.29 12.18 2.14 44.25 0.09 12.28 16 4 H 0.03 1.18 7.92 -2.39 -0.02 1.16 16 5 C -0.54 -26.83 8.84 25.60 0.23 -26.60 16 6 H 0.05 2.79 7.81 -2.91 -0.02 2.77 16 7 C 0.03 1.29 5.29 84.65 0.45 1.74 16 8 N -0.91 -47.22 11.29 21.45 0.24 -46.98 16 9 Si 0.94 41.44 29.54 68.60 2.03 43.47 16 10 H -0.27 -12.00 7.11 99.48 0.71 -11.29 16 11 H -0.28 -12.37 7.11 99.48 0.71 -11.66 16 12 H -0.28 -11.90 7.11 99.48 0.71 -11.20 16 13 N -1.09 -38.12 4.70 -172.51 -0.81 -38.93 16 14 S 2.69 90.85 4.99 -56.49 -0.28 90.57 16 15 O -0.96 -38.81 16.70 -128.00 -2.14 -40.94 16 16 O -0.96 -33.13 16.44 -128.00 -2.10 -35.23 16 17 C -0.63 -17.54 5.83 22.29 0.13 -17.41 16 18 C -0.01 -0.16 9.55 22.27 0.21 0.05 16 19 C -0.06 -1.22 9.55 22.27 0.21 -1.00 16 20 C 0.01 0.13 6.85 36.37 0.25 0.38 16 21 N 0.02 0.59 4.45 -46.47 -0.21 0.38 16 22 O -0.15 -3.80 18.45 18.88 0.35 -3.46 16 23 O -0.15 -3.65 18.45 18.88 0.35 -3.30 16 24 C -0.06 -1.37 9.34 22.29 0.21 -1.16 16 25 C 0.05 1.16 6.30 22.33 0.14 1.30 16 26 Cl -0.01 -0.14 24.91 -2.72 -0.07 -0.20 16 27 H 0.05 1.59 8.14 -2.39 -0.02 1.57 16 28 H 0.06 1.67 5.98 -2.39 -0.01 1.66 16 29 H 0.03 1.14 8.14 -2.39 -0.02 1.12 16 30 H 0.08 3.62 5.95 -2.39 -0.01 3.61 16 31 H 0.05 1.84 8.14 -2.39 -0.02 1.82 16 32 H 0.26 13.15 8.31 -92.71 -0.77 12.38 16 33 H 0.42 12.77 8.83 -96.75 -0.85 11.92 16 34 H 0.19 4.14 7.33 -2.91 -0.02 4.12 16 35 H 0.19 2.89 7.61 -2.91 -0.02 2.87 16 36 H 0.19 3.19 7.61 -2.91 -0.02 3.17 16 Total: -1.00 -60.09 341.93 0.45 -59.63 By element: Atomic # 1 Polarization: 13.71 SS G_CDS: 0.30 Total: 14.01 kcal Atomic # 6 Polarization: -41.81 SS G_CDS: 2.80 Total: -39.02 kcal Atomic # 7 Polarization: -84.75 SS G_CDS: -0.77 Total: -85.52 kcal Atomic # 8 Polarization: -79.39 SS G_CDS: -3.55 Total: -82.93 kcal Atomic # 14 Polarization: 41.44 SS G_CDS: 2.03 Total: 43.47 kcal Atomic # 16 Polarization: 90.85 SS G_CDS: -0.28 Total: 90.57 kcal Atomic # 17 Polarization: -0.14 SS G_CDS: -0.07 Total: -0.20 kcal Total: -60.09 0.45 -59.63 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000054178769.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -10.983 kcal (2) G-P(sol) polarization free energy of solvation -60.086 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -71.069 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 0.453 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -59.633 kcal (6) G-S(sol) free energy of system = (1) + (5) -70.616 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.58 seconds