Wall clock time and date at job start Wed Apr 1 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46975 * 240.00518 * 2 1 3 5 5 H 1.08006 * 119.99842 * 275.01053 * 4 2 1 6 6 C 1.37877 * 120.00098 * 95.01916 * 4 2 1 7 7 N 1.31512 * 119.99974 * 184.89607 * 6 4 2 8 8 Si 1.86799 * 120.00163 * 4.88918 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.80206 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.80500 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.80675 * 8 6 4 12 12 N 1.46501 * 109.47308 * 120.00727 * 2 1 3 13 13 C 1.46498 * 120.00037 * 59.99553 * 12 2 1 14 14 S 1.65598 * 119.99471 * 240.00013 * 12 2 1 15 15 O 1.42101 * 106.39789 * 203.53428 * 14 12 2 16 16 O 1.42092 * 106.40557 * 336.45705 * 14 12 2 17 17 C 1.76207 * 107.21650 * 89.99947 * 14 12 2 18 18 C 1.38229 * 120.41219 * 269.71361 * 17 14 12 19 19 N 1.31855 * 120.78892 * 179.75365 * 18 17 14 20 20 C 1.31880 * 121.73150 * 0.54068 * 19 18 17 21 21 C 1.38277 * 120.74973 * 359.72678 * 20 19 18 22 22 Br 1.89105 * 120.43136 * 179.97438 * 21 20 19 23 23 C 1.38606 * 120.41441 * 90.00230 * 17 14 12 24 24 H 1.09005 * 109.47025 * 174.83268 * 1 2 3 25 25 H 1.09004 * 109.47030 * 54.83476 * 1 2 3 26 26 H 1.09000 * 109.47197 * 294.83338 * 1 2 3 27 27 H 0.97001 * 120.00144 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.46784 * 90.00688 * 13 12 2 29 29 H 1.09004 * 109.47008 * 210.00191 * 13 12 2 30 30 H 1.08993 * 109.47264 * 330.00509 * 13 12 2 31 31 H 1.08007 * 119.60881 * 0.02641 * 18 17 14 32 32 H 1.07995 * 119.62990 * 179.75061 * 20 19 18 33 33 H 1.07999 * 120.79562 * 359.94693 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1353 -1.7855 -1.2293 6 6 2.3606 0.0123 -2.3580 7 7 2.7066 -0.6128 -3.4621 8 14 2.3137 1.8792 -2.3173 9 1 3.5987 2.3950 -1.7808 10 1 2.1071 2.3993 -3.6927 11 1 1.1980 2.3275 -1.4457 12 7 2.0184 -0.6908 1.1961 13 6 1.6644 -2.0933 1.4278 14 16 2.9704 0.1140 2.2861 15 8 3.7118 -0.8791 2.9813 16 8 3.5794 1.1828 1.5748 17 6 1.8960 0.8532 3.4711 18 6 1.4109 2.1325 3.2737 19 7 0.6026 2.6909 4.1531 20 6 0.2344 2.0635 5.2531 21 6 0.6839 0.7836 5.5211 22 35 0.1508 -0.1075 7.1016 23 6 1.5316 0.1616 4.6156 24 1 -0.3633 -1.0235 -0.0926 25 1 -0.3633 0.5919 -0.8401 26 1 -0.3633 0.4316 0.9326 27 1 2.9372 -0.1045 -4.2554 28 1 2.4157 -2.7378 0.9714 29 1 1.6238 -2.2854 2.5000 30 1 0.6905 -2.3003 0.9844 31 1 1.6936 2.6794 2.3863 32 1 -0.4259 2.5547 5.9524 33 1 1.8983 -0.8377 4.7981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:19 Heat of formation + Delta-G solvation = -25.530566 kcal Electronic energy + Delta-G solvation = -21084.423516 eV Core-core repulsion = 17705.144037 eV Total energy + Delta-G solvation = -3379.279478 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.41 seconds Orbital eigenvalues (eV) -40.46574 -36.97845 -36.47151 -35.49137 -33.52580 -32.59472 -32.50515 -30.07392 -29.89723 -25.90643 -25.25969 -24.41875 -23.74853 -20.75431 -18.78274 -17.89279 -17.57044 -17.10215 -16.91925 -16.37660 -15.43966 -14.61889 -14.60672 -14.42981 -13.75480 -13.65547 -13.41950 -12.91832 -12.74208 -12.58381 -12.11178 -11.96629 -11.75029 -11.70996 -11.52028 -11.33668 -11.22964 -10.99331 -10.88745 -10.71280 -10.52480 -10.40871 -9.89870 -9.85365 -9.45795 -9.40569 -8.68227 -8.22195 -6.25018 -4.25345 0.18234 0.59721 0.70154 1.09311 3.02478 3.24724 3.30584 3.39553 3.46486 3.97877 4.07506 4.27239 4.30831 4.37749 4.55057 4.67019 5.04766 5.09518 5.36165 5.41176 5.46773 5.90415 5.98903 6.08666 6.23134 6.27696 6.41623 6.47336 6.79952 7.07208 7.32756 7.33124 7.52037 8.33862 8.80033 9.35332 10.86361 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.003783 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.314044 B = 7400.276268 C = 7684.671384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.149 4.149 2 C 0.230 3.770 3 H 0.059 0.941 4 C -0.513 4.513 5 H 0.084 0.916 6 C 0.080 3.920 7 N -0.883 5.883 8 Si 0.863 3.137 9 H -0.262 1.262 10 H -0.285 1.285 11 H -0.262 1.262 12 N -0.969 5.969 13 C 0.104 3.896 14 S 2.672 3.328 15 O -0.962 6.962 16 O -0.945 6.945 17 C -0.724 4.724 18 C 0.213 3.787 19 N -0.485 5.485 20 C 0.176 3.824 21 C -0.173 4.173 22 Br -0.027 7.027 23 C 0.053 3.947 24 H 0.056 0.944 25 H 0.058 0.942 26 H 0.024 0.976 27 H 0.269 0.731 28 H 0.060 0.940 29 H 0.051 0.949 30 H 0.074 0.926 31 H 0.181 0.819 32 H 0.171 0.829 33 H 0.160 0.840 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -7.216 1.897 19.964 21.313 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.209 4.209 2 C 0.128 3.872 3 H 0.076 0.924 4 C -0.554 4.554 5 H 0.102 0.898 6 C -0.126 4.126 7 N -0.519 5.519 8 Si 0.689 3.311 9 H -0.186 1.186 10 H -0.211 1.211 11 H -0.187 1.187 12 N -0.810 5.810 13 C -0.042 4.042 14 S 2.759 3.241 15 O -0.952 6.952 16 O -0.935 6.935 17 C -0.808 4.808 18 C 0.055 3.945 19 N -0.194 5.194 20 C 0.017 3.983 21 C -0.255 4.255 22 Br 0.058 6.942 23 C 0.024 3.976 24 H 0.075 0.925 25 H 0.077 0.923 26 H 0.043 0.957 27 H 0.079 0.921 28 H 0.079 0.921 29 H 0.070 0.930 30 H 0.093 0.907 31 H 0.198 0.802 32 H 0.188 0.812 33 H 0.178 0.822 Dipole moment (debyes) X Y Z Total from point charges -6.792 2.518 20.275 21.531 hybrid contribution -0.279 0.479 0.069 0.559 sum -7.071 2.998 20.345 21.746 Atomic orbital electron populations 1.22268 0.98075 1.01522 0.99021 1.19250 0.91343 0.93399 0.83225 0.92353 1.21110 1.44227 0.96075 0.93958 0.89792 1.25004 0.93703 0.98578 0.95272 1.69874 1.44063 1.36257 1.01747 0.87053 0.80342 0.86126 0.77545 1.18633 1.21068 1.18703 1.57856 1.70399 1.19652 1.33073 1.21272 1.02173 0.81512 0.99197 1.03088 0.74428 0.73801 0.72801 1.93531 1.68078 1.58618 1.74972 1.93585 1.72945 1.56188 1.70828 1.32828 1.23069 1.08173 1.16680 1.22840 0.85901 0.89576 0.96142 1.68015 1.12644 1.36051 1.02685 1.23180 0.92901 0.89079 0.93131 1.23008 1.06212 0.98914 0.97352 1.96766 1.90361 1.77370 1.29748 1.21337 0.88201 0.99098 0.88929 0.92506 0.92328 0.95742 0.92140 0.92103 0.92997 0.90749 0.80244 0.81200 0.82217 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.15 -2.78 9.04 37.16 0.34 -2.44 16 2 C 0.23 4.97 2.28 -69.08 -0.16 4.81 16 3 H 0.06 1.31 4.06 -51.93 -0.21 1.10 16 4 C -0.51 -13.25 8.82 -34.44 -0.30 -13.56 16 5 H 0.08 2.31 7.67 -52.48 -0.40 1.91 16 6 C 0.08 2.17 5.47 -17.82 -0.10 2.07 16 7 N -0.88 -25.47 13.96 55.43 0.77 -24.70 16 8 Si 0.86 20.58 26.99 -169.99 -4.59 15.99 16 9 H -0.26 -6.39 7.11 56.52 0.40 -5.99 16 10 H -0.28 -6.67 7.11 56.52 0.40 -6.27 16 11 H -0.26 -5.76 6.82 56.52 0.39 -5.37 16 12 N -0.97 -18.22 3.06 -115.85 -0.35 -18.58 16 13 C 0.10 1.66 9.39 59.85 0.56 2.22 16 14 S 2.67 48.35 5.65 -107.50 -0.61 47.74 16 15 O -0.96 -18.21 16.43 -57.17 -0.94 -19.15 16 16 O -0.95 -19.93 15.87 -57.17 -0.91 -20.84 16 17 C -0.72 -10.68 5.99 -39.45 -0.24 -10.92 16 18 C 0.21 3.09 10.69 -17.54 -0.19 2.90 16 19 N -0.48 -6.54 10.36 -13.23 -0.14 -6.68 16 20 C 0.18 1.97 10.95 -17.52 -0.19 1.78 16 21 C -0.17 -1.96 6.25 -39.37 -0.25 -2.21 16 22 Br -0.03 -0.25 33.74 -68.01 -2.29 -2.54 16 23 C 0.05 0.67 9.42 -39.25 -0.37 0.30 16 24 H 0.06 1.01 6.89 -51.93 -0.36 0.65 16 25 H 0.06 1.11 8.14 -51.93 -0.42 0.69 16 26 H 0.02 0.39 8.14 -51.93 -0.42 -0.04 16 27 H 0.27 7.29 8.31 -40.82 -0.34 6.95 16 28 H 0.06 1.01 8.14 -51.93 -0.42 0.59 16 29 H 0.05 0.66 7.79 -51.93 -0.40 0.26 16 30 H 0.07 1.11 6.53 -51.93 -0.34 0.77 16 31 H 0.18 2.48 7.62 -52.48 -0.40 2.08 16 32 H 0.17 1.35 8.06 -52.49 -0.42 0.93 16 33 H 0.16 1.82 7.71 -52.49 -0.40 1.42 16 LS Contribution 314.45 15.07 4.74 4.74 Total: -1.00 -30.80 314.45 -8.57 -39.37 By element: Atomic # 1 Polarization: 3.04 SS G_CDS: -3.36 Total: -0.33 kcal Atomic # 6 Polarization: -14.14 SS G_CDS: -0.89 Total: -15.03 kcal Atomic # 7 Polarization: -50.23 SS G_CDS: 0.28 Total: -49.95 kcal Atomic # 8 Polarization: -38.14 SS G_CDS: -1.85 Total: -39.99 kcal Atomic # 14 Polarization: 20.58 SS G_CDS: -4.59 Total: 15.99 kcal Atomic # 16 Polarization: 48.35 SS G_CDS: -0.61 Total: 47.74 kcal Atomic # 35 Polarization: -0.25 SS G_CDS: -2.29 Total: -2.54 kcal Total LS contribution 4.74 Total: 4.74 kcal Total: -30.80 -8.57 -39.37 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 13.840 kcal (2) G-P(sol) polarization free energy of solvation -30.801 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -16.961 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.570 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.371 kcal (6) G-S(sol) free energy of system = (1) + (5) -25.531 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.41 seconds