Wall clock time and date at job start Wed Apr 1 2020 05:19:19 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.53000 * 1 3 3 H 1.09003 * 109.47092 * 2 1 4 4 C 1.50706 * 109.46975 * 240.00518 * 2 1 3 5 5 H 1.08006 * 119.99842 * 275.01053 * 4 2 1 6 6 C 1.37877 * 120.00098 * 95.01916 * 4 2 1 7 7 N 1.31512 * 119.99974 * 184.89607 * 6 4 2 8 8 Si 1.86799 * 120.00163 * 4.88918 * 6 4 2 9 9 H 1.48496 * 109.46932 * 84.80206 * 8 6 4 10 10 H 1.48491 * 109.47212 * 204.80500 * 8 6 4 11 11 H 1.48507 * 109.46996 * 324.80675 * 8 6 4 12 12 N 1.46501 * 109.47308 * 120.00727 * 2 1 3 13 13 C 1.46498 * 120.00037 * 59.99553 * 12 2 1 14 14 S 1.65598 * 119.99471 * 240.00013 * 12 2 1 15 15 O 1.42101 * 106.39789 * 203.53428 * 14 12 2 16 16 O 1.42092 * 106.40557 * 336.45705 * 14 12 2 17 17 C 1.76207 * 107.21650 * 89.99947 * 14 12 2 18 18 C 1.38229 * 120.41219 * 269.71361 * 17 14 12 19 19 N 1.31855 * 120.78892 * 179.75365 * 18 17 14 20 20 C 1.31880 * 121.73150 * 0.54068 * 19 18 17 21 21 C 1.38277 * 120.74973 * 359.72678 * 20 19 18 22 22 Br 1.89105 * 120.43136 * 179.97438 * 21 20 19 23 23 C 1.38606 * 120.41441 * 90.00230 * 17 14 12 24 24 H 1.09005 * 109.47025 * 174.83268 * 1 2 3 25 25 H 1.09004 * 109.47030 * 54.83476 * 1 2 3 26 26 H 1.09000 * 109.47197 * 294.83338 * 1 2 3 27 27 H 0.97001 * 120.00144 * 179.97438 * 7 6 4 28 28 H 1.08997 * 109.46784 * 90.00688 * 13 12 2 29 29 H 1.09004 * 109.47008 * 210.00191 * 13 12 2 30 30 H 1.08993 * 109.47264 * 330.00509 * 13 12 2 31 31 H 1.08007 * 119.60881 * 0.02641 * 18 17 14 32 32 H 1.07995 * 119.62990 * 179.75061 * 20 19 18 33 33 H 1.07999 * 120.79562 * 359.94693 * 23 17 14 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8933 1.0277 0.0000 4 6 2.0323 -0.7103 -1.2306 5 1 2.1353 -1.7855 -1.2293 6 6 2.3606 0.0123 -2.3580 7 7 2.7066 -0.6128 -3.4621 8 14 2.3137 1.8792 -2.3173 9 1 3.5987 2.3950 -1.7808 10 1 2.1071 2.3993 -3.6927 11 1 1.1980 2.3275 -1.4457 12 7 2.0184 -0.6908 1.1961 13 6 1.6644 -2.0933 1.4278 14 16 2.9704 0.1140 2.2861 15 8 3.7118 -0.8791 2.9813 16 8 3.5794 1.1828 1.5748 17 6 1.8960 0.8532 3.4711 18 6 1.4109 2.1325 3.2737 19 7 0.6026 2.6909 4.1531 20 6 0.2344 2.0635 5.2531 21 6 0.6839 0.7836 5.5211 22 35 0.1508 -0.1075 7.1016 23 6 1.5316 0.1616 4.6156 24 1 -0.3633 -1.0235 -0.0926 25 1 -0.3633 0.5919 -0.8401 26 1 -0.3633 0.4316 0.9326 27 1 2.9372 -0.1045 -4.2554 28 1 2.4157 -2.7378 0.9714 29 1 1.6238 -2.2854 2.5000 30 1 0.6905 -2.3003 0.9844 31 1 1.6936 2.6794 2.3863 32 1 -0.4259 2.5547 5.9524 33 1 1.8983 -0.8377 4.7981 RHF calculation, no. of doubly occupied orbitals= 50 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095057.mol2 33 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:19:19 Heat of formation + Delta-G solvation = -47.757341 kcal Electronic energy + Delta-G solvation = -21085.387341 eV Core-core repulsion = 17705.144037 eV Total energy + Delta-G solvation = -3380.243304 eV No. of doubly occupied orbitals = 50 Molecular weight (most abundant/longest-lived isotopes) = 347.993 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -41.46066 -38.50955 -38.04509 -37.02040 -34.51626 -34.47022 -33.54136 -31.69460 -30.79142 -27.39305 -27.02145 -25.45878 -24.76960 -22.41938 -20.13788 -19.29536 -19.13753 -18.36735 -18.16254 -17.77332 -17.00365 -16.17597 -15.62769 -15.55991 -15.34733 -14.82211 -14.62642 -14.51549 -14.39828 -13.98225 -13.56533 -13.46743 -13.27434 -13.03120 -12.99772 -12.65954 -12.58141 -12.52506 -12.37097 -12.06144 -11.77319 -11.68708 -11.54620 -11.25450 -10.88950 -10.71493 -10.29675 -9.76130 -8.30924 -6.34583 -0.91140 -0.65715 -0.36506 0.23197 1.33754 1.43815 1.45734 1.85535 2.21524 2.34334 2.65838 2.98404 3.08714 3.19583 3.39744 3.51817 3.73057 3.87203 3.97370 4.39738 4.44491 4.49132 4.69426 4.79494 4.82449 4.91963 5.01359 5.12045 5.30562 5.51928 5.55885 5.88028 6.32605 6.34934 6.72445 7.30753 8.84567 Molecular weight = 347.99amu Principal moments of inertia in cm(-1) A = 0.022643 B = 0.003783 C = 0.003643 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1236.314044 B = 7400.276268 C = 7684.671384 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.144 4.144 2 C 0.232 3.768 3 H 0.052 0.948 4 C -0.515 4.515 5 H 0.053 0.947 6 C 0.025 3.975 7 N -0.936 5.936 8 Si 0.906 3.094 9 H -0.274 1.274 10 H -0.281 1.281 11 H -0.229 1.229 12 N -0.980 5.980 13 C 0.097 3.903 14 S 2.690 3.310 15 O -0.975 6.975 16 O -0.982 6.982 17 C -0.725 4.725 18 C 0.206 3.794 19 N -0.495 5.495 20 C 0.185 3.815 21 C -0.171 4.171 22 Br -0.001 7.001 23 C 0.050 3.950 24 H 0.062 0.938 25 H 0.053 0.947 26 H 0.055 0.945 27 H 0.268 0.732 28 H 0.043 0.957 29 H 0.087 0.913 30 H 0.085 0.915 31 H 0.180 0.820 32 H 0.206 0.794 33 H 0.173 0.827 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -9.199 2.907 23.233 25.156 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.203 4.203 2 C 0.128 3.872 3 H 0.070 0.930 4 C -0.555 4.555 5 H 0.071 0.929 6 C -0.174 4.174 7 N -0.575 5.575 8 Si 0.730 3.270 9 H -0.200 1.200 10 H -0.206 1.206 11 H -0.152 1.152 12 N -0.820 5.820 13 C -0.048 4.048 14 S 2.781 3.219 15 O -0.965 6.965 16 O -0.972 6.972 17 C -0.814 4.814 18 C 0.048 3.952 19 N -0.204 5.204 20 C 0.027 3.973 21 C -0.254 4.254 22 Br 0.084 6.916 23 C 0.022 3.978 24 H 0.081 0.919 25 H 0.072 0.928 26 H 0.074 0.926 27 H 0.077 0.923 28 H 0.061 0.939 29 H 0.105 0.895 30 H 0.103 0.897 31 H 0.197 0.803 32 H 0.223 0.777 33 H 0.191 0.809 Dipole moment (debyes) X Y Z Total from point charges -8.771 3.490 23.509 25.334 hybrid contribution 0.298 0.086 -0.630 0.703 sum -8.474 3.576 22.879 24.658 Atomic orbital electron populations 1.22145 0.95430 1.02256 1.00493 1.19078 0.93207 0.92527 0.82358 0.93008 1.21381 1.43249 0.94985 0.95896 0.92921 1.25716 0.94067 1.02548 0.95116 1.70000 1.47181 1.37749 1.02598 0.86347 0.80799 0.81634 0.78249 1.19966 1.20631 1.15190 1.57468 1.70412 1.20911 1.33238 1.21474 1.02113 0.79723 1.01505 1.01949 0.74135 0.73057 0.72786 1.93513 1.68768 1.59231 1.74993 1.93541 1.74328 1.57131 1.72242 1.32064 1.23948 1.08671 1.16724 1.22911 0.86200 0.89438 0.96685 1.68088 1.12705 1.36302 1.03330 1.23802 0.92029 0.88922 0.92557 1.23142 1.05309 0.99053 0.97860 1.96816 1.89986 1.76927 1.27893 1.21555 0.88166 0.99638 0.88450 0.91916 0.92754 0.92608 0.92329 0.93852 0.89454 0.89669 0.80324 0.77737 0.80944 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.05 9.04 71.98 0.65 -4.40 16 2 C 0.23 9.87 2.28 44.25 0.10 9.97 16 3 H 0.05 2.28 4.06 -2.39 -0.01 2.27 16 4 C -0.51 -27.28 8.82 25.60 0.23 -27.06 16 5 H 0.05 3.04 7.67 -2.91 -0.02 3.02 16 6 C 0.03 1.41 5.47 84.65 0.46 1.88 16 7 N -0.94 -56.32 13.96 21.45 0.30 -56.02 16 8 Si 0.91 42.60 26.99 68.60 1.85 44.46 16 9 H -0.27 -13.35 7.11 99.48 0.71 -12.64 16 10 H -0.28 -12.86 7.11 99.48 0.71 -12.16 16 11 H -0.23 -9.42 6.82 99.48 0.68 -8.74 16 12 N -0.98 -36.04 3.06 -520.44 -1.59 -37.63 16 13 C 0.10 2.98 9.39 127.77 1.20 4.18 16 14 S 2.69 94.79 5.65 -56.49 -0.32 94.47 16 15 O -0.98 -35.90 16.43 -128.00 -2.10 -38.00 16 16 O -0.98 -41.36 15.87 -128.00 -2.03 -43.40 16 17 C -0.72 -19.72 5.99 22.36 0.13 -19.58 16 18 C 0.21 5.47 10.69 84.69 0.90 6.38 16 19 N -0.49 -11.73 10.36 -195.77 -2.03 -13.76 16 20 C 0.19 3.38 10.95 84.69 0.93 4.31 16 21 C -0.17 -3.22 6.25 22.40 0.14 -3.08 16 22 Br 0.00 -0.01 33.74 -20.37 -0.69 -0.70 16 23 C 0.05 1.12 9.42 22.48 0.21 1.34 16 24 H 0.06 2.11 6.89 -2.38 -0.02 2.09 16 25 H 0.05 1.95 8.14 -2.39 -0.02 1.93 16 26 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 27 H 0.27 15.19 8.31 -92.71 -0.77 14.42 16 28 H 0.04 1.46 8.14 -2.39 -0.02 1.44 16 29 H 0.09 2.03 7.79 -2.38 -0.02 2.01 16 30 H 0.08 2.42 6.53 -2.39 -0.02 2.40 16 31 H 0.18 4.67 7.62 -2.91 -0.02 4.65 16 32 H 0.21 2.21 8.06 -2.91 -0.02 2.19 16 33 H 0.17 3.36 7.71 -2.91 -0.02 3.34 16 Total: -1.00 -68.31 314.45 -0.54 -68.85 By element: Atomic # 1 Polarization: 6.69 SS G_CDS: 1.11 Total: 7.81 kcal Atomic # 6 Polarization: -31.03 SS G_CDS: 4.96 Total: -26.07 kcal Atomic # 7 Polarization: -104.09 SS G_CDS: -3.32 Total: -107.41 kcal Atomic # 8 Polarization: -77.26 SS G_CDS: -4.13 Total: -81.40 kcal Atomic # 14 Polarization: 42.60 SS G_CDS: 1.85 Total: 44.46 kcal Atomic # 16 Polarization: 94.79 SS G_CDS: -0.32 Total: 94.47 kcal Atomic # 35 Polarization: -0.01 SS G_CDS: -0.69 Total: -0.70 kcal Total: -68.31 -0.54 -68.85 kcal The number of atoms in the molecule is 33 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095057.mol2 33 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 21.089 kcal (2) G-P(sol) polarization free energy of solvation -68.305 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -47.216 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -0.542 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -68.847 kcal (6) G-S(sol) free energy of system = (1) + (5) -47.757 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds