Wall clock time and date at job start Wed Apr 1 2020 05:42:44 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 C 1.76199 * 107.21580 * 89.99958 * 14 12 2 18 18 C 1.38239 * 120.00836 * 114.72534 * 17 14 12 19 19 C 1.38219 * 120.01368 * 179.76708 * 18 17 14 20 20 C 1.38263 * 120.02466 * 0.50637 * 19 18 17 21 21 N 1.48023 * 119.99177 * 179.72894 * 20 19 18 22 22 O 1.21802 * 119.99846 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00047 * 0.02562 * 21 20 19 24 24 C 1.38194 * 120.01473 * 359.74425 * 20 19 18 25 25 C 1.38331 * 120.00676 * 294.99685 * 17 14 12 26 26 Cl 1.73599 * 120.01449 * 0.02562 * 25 17 14 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 32 32 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 33 33 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 34 34 H 1.08001 * 119.99053 * 0.02562 * 18 17 14 35 35 H 1.07993 * 119.98782 * 180.25322 * 19 18 17 36 36 H 1.08000 * 120.00562 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8535 3.4711 18 6 1.9281 0.4363 4.7886 19 6 1.0888 1.0195 5.7191 20 6 0.2094 2.0131 5.3307 21 7 -0.6934 2.6330 6.3266 22 8 -1.4685 3.5081 5.9845 23 8 -0.6611 2.2681 7.4882 24 6 0.1728 2.4275 4.0128 25 6 1.0165 1.8476 3.0819 26 17 0.9702 2.3668 1.4260 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2852 2.5002 33 1 0.6903 -2.3002 0.9846 34 1 2.6121 -0.3427 5.0917 35 1 1.1170 0.6961 6.7491 36 1 -0.5140 3.2039 3.7097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000063095292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:44 Heat of formation + Delta-G solvation = -31.728532 kcal Electronic energy + Delta-G solvation = -27058.043614 eV Core-core repulsion = 22892.923057 eV Total energy + Delta-G solvation = -4165.120557 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.52 seconds Orbital eigenvalues (eV) -42.54021 -39.81097 -37.30318 -36.90937 -36.72721 -36.33876 -35.58626 -32.75262 -32.60507 -31.60222 -29.30497 -27.21099 -25.83746 -25.29940 -23.69631 -23.12785 -20.98123 -19.82707 -19.07234 -19.02101 -17.89121 -17.80243 -17.30850 -16.50470 -16.24673 -15.76424 -15.29872 -14.76973 -14.65304 -14.29385 -14.22075 -13.75978 -13.32777 -13.27684 -12.40842 -12.30096 -12.12688 -12.07399 -11.90133 -11.81514 -11.63384 -11.52354 -11.44857 -11.40016 -11.19947 -11.04213 -10.94145 -10.81864 -10.52702 -10.39342 -10.28928 -10.12117 -9.41432 -9.26011 -8.53076 -8.21263 -6.19413 -4.25635 -0.80705 0.35404 0.49983 0.78446 0.88795 1.71027 2.52895 3.21020 3.25853 3.30115 3.34216 3.77453 3.91646 4.06299 4.19351 4.31096 4.51587 4.78009 4.87789 4.96254 5.11541 5.13035 5.28556 5.36892 5.65055 5.95237 6.00389 6.15778 6.43507 6.60139 6.64399 6.84935 7.20778 7.28251 7.47510 7.64723 7.89494 8.12298 8.76123 9.40206 10.86367 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.003978 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.399430 B = 7037.399023 C = 7806.999621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.156 4.156 2 C 0.259 3.741 3 H 0.072 0.928 4 C -0.520 4.520 5 H 0.065 0.935 6 C 0.065 3.935 7 N -0.889 5.889 8 Si 0.899 3.101 9 H -0.272 1.272 10 H -0.283 1.283 11 H -0.282 1.282 12 N -0.968 5.968 13 C 0.104 3.896 14 S 2.670 3.330 15 O -0.960 6.960 16 O -0.926 6.926 17 C -0.631 4.631 18 C -0.012 4.012 19 C -0.079 4.079 20 C 0.008 3.992 21 N 0.023 4.977 22 O -0.146 6.146 23 O -0.148 6.148 24 C -0.072 4.072 25 C 0.042 3.958 26 Cl 0.031 6.969 27 H 0.096 0.904 28 H 0.015 0.985 29 H 0.034 0.966 30 H 0.264 0.736 31 H 0.058 0.942 32 H 0.051 0.949 33 H 0.077 0.923 34 H 0.174 0.826 35 H 0.166 0.834 36 H 0.170 0.830 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.820 -0.080 13.386 13.509 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.215 4.215 2 C 0.157 3.843 3 H 0.090 0.910 4 C -0.560 4.560 5 H 0.084 0.916 6 C -0.137 4.137 7 N -0.527 5.527 8 Si 0.727 3.273 9 H -0.196 1.196 10 H -0.209 1.209 11 H -0.208 1.208 12 N -0.810 5.810 13 C -0.042 4.042 14 S 2.754 3.246 15 O -0.950 6.950 16 O -0.916 6.916 17 C -0.711 4.711 18 C -0.032 4.032 19 C -0.099 4.099 20 C -0.075 4.075 21 N 0.546 4.454 22 O -0.364 6.364 23 O -0.365 6.365 24 C -0.093 4.093 25 C 0.013 3.987 26 Cl 0.061 6.939 27 H 0.114 0.886 28 H 0.034 0.966 29 H 0.054 0.946 30 H 0.074 0.926 31 H 0.077 0.923 32 H 0.070 0.930 33 H 0.096 0.904 34 H 0.191 0.809 35 H 0.183 0.817 36 H 0.188 0.812 Dipole moment (debyes) X Y Z Total from point charges -0.604 -0.126 12.655 12.670 hybrid contribution -0.803 0.012 -0.348 0.875 sum -1.407 -0.113 12.307 12.387 Atomic orbital electron populations 1.22326 0.98049 1.00037 1.01118 1.19197 0.91542 0.93591 0.79978 0.91049 1.21343 1.31859 1.13073 0.89690 0.91643 1.24887 0.94851 0.94993 0.99002 1.69844 1.36361 1.22637 1.23900 0.86421 0.78658 0.79691 0.82556 1.19645 1.20945 1.20828 1.57442 1.70317 1.19520 1.33756 1.21297 1.02435 0.81262 0.99192 1.03123 0.74427 0.74120 0.72972 1.93538 1.67687 1.58644 1.75101 1.93654 1.72446 1.55596 1.69923 1.32271 1.15883 1.08402 1.14513 1.21062 0.95702 0.96867 0.89521 1.21241 0.92907 0.93195 1.02588 1.21220 0.96836 1.00151 0.89275 1.43570 1.00328 0.99837 1.01699 1.94579 1.33693 1.23063 1.85060 1.94550 1.74127 1.65716 1.02129 1.21005 0.98678 0.99972 0.89596 1.20622 0.93910 0.93822 0.90335 1.98614 1.96671 1.89615 1.09013 0.88582 0.96622 0.94649 0.92603 0.92333 0.92999 0.90411 0.80904 0.81650 0.81244 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.16 -3.23 8.12 37.16 0.30 -2.92 16 2 C 0.26 5.74 1.63 -69.08 -0.11 5.63 16 3 H 0.07 1.70 4.42 -51.93 -0.23 1.48 16 4 C -0.52 -13.00 8.37 -34.44 -0.29 -13.29 16 5 H 0.07 1.63 7.65 -52.49 -0.40 1.23 16 6 C 0.07 1.67 5.30 -17.82 -0.09 1.57 16 7 N -0.89 -23.20 11.32 55.43 0.63 -22.57 16 8 Si 0.90 20.09 29.54 -169.99 -5.02 15.07 16 9 H -0.27 -6.02 7.11 56.52 0.40 -5.62 16 10 H -0.28 -6.27 7.11 56.52 0.40 -5.87 16 11 H -0.28 -6.37 7.11 56.52 0.40 -5.97 16 12 N -0.97 -18.13 3.06 -115.84 -0.35 -18.49 16 13 C 0.10 1.63 9.53 59.85 0.57 2.20 16 14 S 2.67 46.93 5.14 -107.50 -0.55 46.37 16 15 O -0.96 -16.85 16.04 -57.17 -0.92 -17.77 16 16 O -0.93 -19.20 15.23 -57.17 -0.87 -20.07 16 17 C -0.63 -8.99 5.91 -39.55 -0.23 -9.23 16 18 C -0.01 -0.13 9.55 -39.59 -0.38 -0.51 16 19 C -0.08 -0.81 9.55 -39.58 -0.38 -1.19 16 20 C 0.01 0.09 6.85 -79.95 -0.55 -0.45 16 21 N 0.02 0.30 4.45 33.96 0.15 0.45 16 22 O -0.15 -1.97 18.45 -29.46 -0.54 -2.51 16 23 O -0.15 -1.89 18.45 -29.46 -0.54 -2.43 16 24 C -0.07 -0.90 9.34 -39.55 -0.37 -1.27 16 25 C 0.04 0.61 6.30 -39.50 -0.25 0.36 16 26 Cl 0.03 0.53 20.09 -51.86 -1.04 -0.52 16 27 H 0.10 2.24 6.07 -51.93 -0.32 1.92 16 28 H 0.01 0.27 6.18 -51.93 -0.32 -0.05 16 29 H 0.03 0.69 6.66 -51.93 -0.35 0.35 16 30 H 0.26 6.60 8.31 -40.82 -0.34 6.26 16 31 H 0.06 0.91 8.14 -51.93 -0.42 0.49 16 32 H 0.05 0.65 7.79 -51.93 -0.40 0.24 16 33 H 0.08 1.18 6.43 -51.93 -0.33 0.84 16 34 H 0.17 1.53 7.33 -52.49 -0.38 1.14 16 35 H 0.17 1.22 7.61 -52.49 -0.40 0.82 16 36 H 0.17 1.85 7.61 -52.49 -0.40 1.45 16 LS Contribution 327.75 15.07 4.94 4.94 Total: -1.00 -28.92 327.75 -9.00 -37.92 By element: Atomic # 1 Polarization: 1.81 SS G_CDS: -3.09 Total: -1.28 kcal Atomic # 6 Polarization: -17.33 SS G_CDS: -1.78 Total: -19.11 kcal Atomic # 7 Polarization: -41.04 SS G_CDS: 0.42 Total: -40.61 kcal Atomic # 8 Polarization: -39.91 SS G_CDS: -2.88 Total: -42.78 kcal Atomic # 14 Polarization: 20.09 SS G_CDS: -5.02 Total: 15.07 kcal Atomic # 16 Polarization: 46.93 SS G_CDS: -0.55 Total: 46.37 kcal Atomic # 17 Polarization: 0.53 SS G_CDS: -1.04 Total: -0.52 kcal Total LS contribution 4.94 Total: 4.94 kcal Total: -28.92 -9.00 -37.92 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 6.191 kcal (2) G-P(sol) polarization free energy of solvation -28.921 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -22.730 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -8.998 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -37.919 kcal (6) G-S(sol) free energy of system = (1) + (5) -31.729 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.52 seconds