Wall clock time and date at job start Wed Apr 1 2020 05:42:43 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 C 1.52997 * 1 3 3 H 1.08996 * 109.47853 * 2 1 4 4 C 1.50708 * 109.47141 * 239.99699 * 2 1 3 5 5 H 1.07995 * 119.99755 * 240.00383 * 4 2 1 6 6 C 1.37873 * 119.99729 * 60.00006 * 4 2 1 7 7 N 1.31516 * 119.99909 * 0.02562 * 6 4 2 8 8 Si 1.86803 * 119.99980 * 179.97438 * 6 4 2 9 9 H 1.48501 * 109.46950 * 0.02562 * 8 6 4 10 10 H 1.48497 * 109.47111 * 120.00368 * 8 6 4 11 11 H 1.48500 * 109.47074 * 240.00161 * 8 6 4 12 12 N 1.46506 * 109.47289 * 119.99984 * 2 1 3 13 13 C 1.46505 * 119.99873 * 59.99624 * 12 2 1 14 14 S 1.65601 * 120.00051 * 239.99945 * 12 2 1 15 15 O 1.42100 * 106.40006 * 203.53712 * 14 12 2 16 16 O 1.42098 * 106.40043 * 336.45994 * 14 12 2 17 17 C 1.76199 * 107.21580 * 89.99958 * 14 12 2 18 18 C 1.38239 * 120.00836 * 114.72534 * 17 14 12 19 19 C 1.38219 * 120.01368 * 179.76708 * 18 17 14 20 20 C 1.38263 * 120.02466 * 0.50637 * 19 18 17 21 21 N 1.48023 * 119.99177 * 179.72894 * 20 19 18 22 22 O 1.21802 * 119.99846 * 180.02562 * 21 20 19 23 23 O 1.21799 * 120.00047 * 0.02562 * 21 20 19 24 24 C 1.38194 * 120.01473 * 359.74425 * 20 19 18 25 25 C 1.38331 * 120.00676 * 294.99685 * 17 14 12 26 26 Cl 1.73599 * 120.01449 * 0.02562 * 25 17 14 27 27 H 1.09002 * 109.47153 * 59.99972 * 1 2 3 28 28 H 1.09001 * 109.46832 * 300.00163 * 1 2 3 29 29 H 1.09004 * 109.47261 * 180.02562 * 1 2 3 30 30 H 0.97002 * 119.99804 * 180.02562 * 7 6 4 31 31 H 1.08999 * 109.46723 * 90.00515 * 13 12 2 32 32 H 1.08997 * 109.46979 * 210.00219 * 13 12 2 33 33 H 1.09005 * 109.46961 * 330.00570 * 13 12 2 34 34 H 1.08001 * 119.99053 * 0.02562 * 18 17 14 35 35 H 1.07993 * 119.98782 * 180.25322 * 19 18 17 36 36 H 1.08000 * 120.00562 * 180.02562 * 24 20 19 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 6 1.5300 0.0000 0.0000 3 1 1.8934 1.0276 0.0000 4 6 2.0323 -0.7105 -1.2305 5 1 2.6532 -1.5886 -1.1313 6 6 1.6992 -0.2395 -2.4827 7 7 0.9435 0.8301 -2.6034 8 14 2.3225 -1.1197 -4.0079 9 1 3.1474 -2.2865 -3.6037 10 1 1.1678 -1.5867 -4.8165 11 1 3.1472 -0.1859 -4.8161 12 7 2.0184 -0.6906 1.1962 13 6 1.6644 -2.0932 1.4281 14 16 2.9705 0.1142 2.2862 15 8 3.7118 -0.8789 2.9815 16 8 3.5794 1.1829 1.5748 17 6 1.8961 0.8535 3.4711 18 6 1.9281 0.4363 4.7886 19 6 1.0888 1.0195 5.7191 20 6 0.2094 2.0131 5.3307 21 7 -0.6934 2.6330 6.3266 22 8 -1.4685 3.5081 5.9845 23 8 -0.6611 2.2681 7.4882 24 6 0.1728 2.4275 4.0128 25 6 1.0165 1.8476 3.0819 26 17 0.9702 2.3668 1.4260 27 1 -0.3633 0.5138 -0.8900 28 1 -0.3633 0.5139 0.8900 29 1 -0.3634 -1.0277 0.0005 30 1 0.7089 1.1613 -3.4844 31 1 2.4157 -2.7377 0.9718 32 1 1.6238 -2.2852 2.5002 33 1 0.6903 -2.3002 0.9846 34 1 2.6121 -0.3427 5.0917 35 1 1.1170 0.6961 6.7491 36 1 -0.5140 3.2039 3.7097 RHF calculation, no. of doubly occupied orbitals= 58 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). S: (AM1): M.J.S. DEWAR, Y.-C. YUAN, INORGANIC CHEM., 29, 589 (1990) Cl: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000063095292.mol2 36 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:42:43 Heat of formation + Delta-G solvation = -49.286840 kcal Electronic energy + Delta-G solvation = -27058.804999 eV Core-core repulsion = 22892.923057 eV Total energy + Delta-G solvation = -4165.881942 eV No. of doubly occupied orbitals = 58 Molecular weight (most abundant/longest-lived isotopes) = 348.042 amu Computer time = 0.55 seconds Orbital eigenvalues (eV) -43.52309 -40.81874 -38.66086 -38.09197 -37.90890 -37.76681 -37.03581 -34.54511 -33.62686 -32.58230 -30.95423 -28.23897 -27.30536 -27.04808 -24.66497 -24.16369 -22.61529 -20.80635 -20.34818 -20.01720 -19.15941 -18.87252 -18.77930 -18.14268 -17.49858 -16.82689 -16.74209 -16.31510 -15.75018 -15.48983 -15.27231 -15.20543 -14.87158 -14.64592 -13.77346 -13.55564 -13.51515 -13.33722 -13.27538 -13.03292 -12.92420 -12.87463 -12.76895 -12.67527 -12.61276 -12.45290 -12.42752 -12.23876 -12.11972 -12.06572 -11.77831 -11.37842 -10.96466 -10.48615 -10.37605 -9.74274 -8.10474 -6.21963 -1.82445 -0.84293 -0.60796 -0.23777 -0.11035 0.59935 1.42287 1.46298 1.52381 1.55699 1.94945 2.44398 2.52403 2.85858 3.11214 3.19155 3.19466 3.52679 3.58974 3.89163 4.04717 4.09987 4.17853 4.39240 4.68904 4.73928 4.84900 4.99002 5.03031 5.03656 5.15539 5.19956 5.63014 5.69258 5.89691 6.12269 6.26532 6.31423 6.84821 7.46090 8.93521 Molecular weight = 348.04amu Principal moments of inertia in cm(-1) A = 0.018935 B = 0.003978 C = 0.003586 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1478.399430 B = 7037.399023 C = 7806.999621 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C -0.143 4.143 2 C 0.262 3.738 3 H 0.055 0.945 4 C -0.535 4.535 5 H 0.059 0.941 6 C 0.022 3.978 7 N -0.911 5.911 8 Si 0.950 3.050 9 H -0.269 1.269 10 H -0.278 1.278 11 H -0.286 1.286 12 N -0.980 5.980 13 C 0.095 3.905 14 S 2.682 3.318 15 O -0.962 6.962 16 O -0.967 6.967 17 C -0.635 4.635 18 C 0.000 4.000 19 C -0.055 4.055 20 C 0.006 3.994 21 N 0.024 4.976 22 O -0.174 6.174 23 O -0.128 6.128 24 C -0.070 4.070 25 C 0.030 3.970 26 Cl -0.002 7.002 27 H 0.067 0.933 28 H 0.037 0.963 29 H 0.039 0.961 30 H 0.263 0.737 31 H 0.053 0.947 32 H 0.087 0.913 33 H 0.079 0.921 34 H 0.203 0.797 35 H 0.205 0.795 36 H 0.179 0.821 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges -1.925 -1.308 16.033 16.201 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C -0.202 4.202 2 C 0.158 3.842 3 H 0.072 0.928 4 C -0.575 4.575 5 H 0.077 0.923 6 C -0.179 4.179 7 N -0.550 5.550 8 Si 0.776 3.224 9 H -0.193 1.193 10 H -0.204 1.204 11 H -0.212 1.212 12 N -0.821 5.821 13 C -0.050 4.050 14 S 2.770 3.230 15 O -0.952 6.952 16 O -0.957 6.957 17 C -0.720 4.720 18 C -0.019 4.019 19 C -0.075 4.075 20 C -0.077 4.077 21 N 0.545 4.455 22 O -0.385 6.385 23 O -0.352 6.352 24 C -0.090 4.090 25 C 0.001 3.999 26 Cl 0.028 6.972 27 H 0.086 0.914 28 H 0.056 0.944 29 H 0.058 0.942 30 H 0.072 0.928 31 H 0.071 0.929 32 H 0.106 0.894 33 H 0.098 0.902 34 H 0.220 0.780 35 H 0.222 0.778 36 H 0.196 0.804 Dipole moment (debyes) X Y Z Total from point charges -0.713 -1.353 15.230 15.307 hybrid contribution -0.750 0.365 -0.912 1.236 sum -1.463 -0.988 14.318 14.426 Atomic orbital electron populations 1.22117 0.97168 1.00132 1.00801 1.18886 0.92113 0.92757 0.80415 0.92781 1.21692 1.31531 1.13002 0.91246 0.92261 1.25536 0.95272 0.95696 1.01354 1.69960 1.37279 1.23604 1.24158 0.85630 0.78192 0.78709 0.79838 1.19302 1.20413 1.21233 1.57308 1.70356 1.20790 1.33622 1.21527 1.02303 0.79626 1.01581 1.02333 0.74250 0.73429 0.72959 1.93527 1.68099 1.58678 1.74899 1.93608 1.73951 1.56776 1.71415 1.31739 1.16001 1.09147 1.15118 1.21440 0.95703 0.96866 0.87934 1.21664 0.90639 0.91147 1.04037 1.21335 0.97013 1.00496 0.88824 1.43647 1.00306 0.99753 1.01768 1.94605 1.34668 1.24015 1.85213 1.94535 1.73478 1.64995 1.02172 1.21013 0.98319 0.99980 0.89715 1.20537 0.95327 0.94917 0.89124 1.98603 1.96896 1.89974 1.11769 0.91391 0.94399 0.94175 0.92767 0.92871 0.89426 0.90209 0.77998 0.77849 0.80365 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 18. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C -0.14 -5.97 8.12 71.98 0.58 -5.38 16 2 C 0.26 11.77 1.63 44.25 0.07 11.84 16 3 H 0.05 2.67 4.42 -2.39 -0.01 2.66 16 4 C -0.53 -27.22 8.37 25.60 0.21 -27.01 16 5 H 0.06 2.99 7.65 -2.91 -0.02 2.97 16 6 C 0.02 1.11 5.30 84.65 0.45 1.56 16 7 N -0.91 -48.76 11.32 21.45 0.24 -48.52 16 8 Si 0.95 41.70 29.54 68.60 2.03 43.72 16 9 H -0.27 -11.51 7.11 99.48 0.71 -10.80 16 10 H -0.28 -11.89 7.11 99.48 0.71 -11.19 16 11 H -0.29 -12.64 7.11 99.48 0.71 -11.93 16 12 N -0.98 -36.22 3.06 -520.41 -1.59 -37.81 16 13 C 0.09 2.82 9.53 127.77 1.22 4.04 16 14 S 2.68 91.86 5.14 -56.49 -0.29 91.57 16 15 O -0.96 -31.84 16.04 -128.00 -2.05 -33.89 16 16 O -0.97 -40.79 15.23 -128.00 -1.95 -42.74 16 17 C -0.64 -16.77 5.91 22.29 0.13 -16.63 16 18 C 0.00 0.00 9.55 22.27 0.21 0.21 16 19 C -0.06 -0.86 9.55 22.27 0.21 -0.65 16 20 C 0.01 0.12 6.85 36.37 0.25 0.37 16 21 N 0.02 0.53 4.45 -46.47 -0.21 0.33 16 22 O -0.17 -4.41 18.45 18.88 0.35 -4.06 16 23 O -0.13 -2.78 18.45 18.89 0.35 -2.43 16 24 C -0.07 -1.63 9.34 22.29 0.21 -1.42 16 25 C 0.03 0.83 6.30 22.32 0.14 0.97 16 26 Cl 0.00 -0.08 20.09 -2.72 -0.05 -0.13 16 27 H 0.07 3.25 6.07 -2.39 -0.01 3.23 16 28 H 0.04 1.36 6.18 -2.39 -0.01 1.35 16 29 H 0.04 1.57 6.66 -2.38 -0.02 1.56 16 30 H 0.26 13.50 8.31 -92.71 -0.77 12.72 16 31 H 0.05 1.61 8.14 -2.39 -0.02 1.59 16 32 H 0.09 1.94 7.79 -2.39 -0.02 1.92 16 33 H 0.08 2.32 6.43 -2.38 -0.02 2.31 16 34 H 0.20 2.51 7.33 -2.91 -0.02 2.49 16 35 H 0.20 1.67 7.61 -2.91 -0.02 1.65 16 36 H 0.18 3.73 7.61 -2.91 -0.02 3.70 16 Total: -1.00 -63.46 327.75 1.66 -61.80 By element: Atomic # 1 Polarization: 3.08 SS G_CDS: 1.15 Total: 4.24 kcal Atomic # 6 Polarization: -35.78 SS G_CDS: 3.69 Total: -32.08 kcal Atomic # 7 Polarization: -84.44 SS G_CDS: -1.56 Total: -86.00 kcal Atomic # 8 Polarization: -79.81 SS G_CDS: -3.31 Total: -83.12 kcal Atomic # 14 Polarization: 41.70 SS G_CDS: 2.03 Total: 43.72 kcal Atomic # 16 Polarization: 91.86 SS G_CDS: -0.29 Total: 91.57 kcal Atomic # 17 Polarization: -0.08 SS G_CDS: -0.05 Total: -0.13 kcal Total: -63.46 1.66 -61.80 kcal The number of atoms in the molecule is 36 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000063095292.mol2 36 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute 12.514 kcal (2) G-P(sol) polarization free energy of solvation -63.464 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -50.951 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 1.664 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -61.801 kcal (6) G-S(sol) free energy of system = (1) + (5) -49.287 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.55 seconds