Wall clock time and date at job start Wed Apr 1 2020 05:24:37 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * DEV - DEVELOPER OPTIONS ARE ALLOWED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS USER-SPECIFIED * DIELEC - THE SOLVENT DIELECTRIC CONSTANT IS 2.06 * IOFR - THE SOLVENT INDEX OF REFRACTION IS 1.4345 * ALPHA - THE SOLVENT ALPHA IS 0.00 * BETA - THE SOLVENT BETA IS 0.00 * GAMMA - THE SOLVENT MACROSCOPIC SURFACE TENSION IS * 38.93 CAL MOL^-1 ANGSTROM^-2 * FACARB - THE FRACTION OF AROMATIC CARBONS IS 0.00 * FEHALO - THE FRACTION OF ELECTRONEGATIVE HALOGENS IS 0.00 ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 119.99930 * 2 1 4 4 H 1.07996 * 120.00299 * 199.24826 * 3 2 1 5 5 C 1.38816 * 120.00085 * 19.25404 * 3 2 1 6 6 N 1.31624 * 119.99739 * 18.65958 * 5 3 2 7 7 Si 1.86794 * 120.00070 * 198.66652 * 5 3 2 8 8 H 1.48505 * 109.47449 * 89.99824 * 7 5 3 9 9 H 1.48505 * 109.47163 * 209.99756 * 7 5 3 10 10 H 1.48499 * 109.47105 * 329.99805 * 7 5 3 11 11 C 1.46503 * 120.00226 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47126 * 89.99979 * 11 2 1 13 13 O 1.21296 * 119.99668 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99610 * 179.72527 * 12 11 2 15 15 C 1.40184 * 119.99684 * 176.96518 * 14 12 11 16 16 C 1.39046 * 120.06007 * 325.93813 * 15 14 12 17 17 F 1.35101 * 120.03388 * 359.97438 * 16 15 14 18 18 C 1.38286 * 119.92383 * 179.77028 * 16 15 14 19 19 C 1.38487 * 120.03795 * 0.50161 * 18 16 15 20 20 F 1.35097 * 119.94671 * 179.76981 * 19 18 16 21 21 C 1.38441 * 120.11443 * 359.75008 * 19 18 16 22 22 C 1.38258 * 120.07291 * 359.97438 * 21 19 18 23 23 Br 1.89102 * 120.01693 * 180.02562 * 22 21 19 24 24 H 1.09006 * 109.47509 * 271.41450 * 1 2 3 25 25 H 1.08997 * 109.47456 * 31.41701 * 1 2 3 26 26 H 1.09000 * 109.47245 * 151.41823 * 1 2 3 27 27 H 0.96997 * 119.99359 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46974 * 330.00077 * 11 2 1 29 29 H 1.08998 * 109.46895 * 210.00293 * 11 2 1 30 30 H 0.96999 * 120.00090 * 356.97241 * 14 12 11 31 31 H 1.08003 * 119.97924 * 180.24971 * 18 16 15 32 32 H 1.07994 * 119.96078 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1843 1.2121 -0.3083 5 6 1.5138 2.3545 0.3964 6 7 0.4073 2.2932 1.1067 7 14 2.2282 4.0138 -0.0783 8 1 1.6616 4.4419 -1.3826 9 1 1.8865 5.0161 0.9628 10 1 3.7046 3.9026 -0.1927 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7031 -1.4216 13 8 2.0549 -1.0198 -2.3432 14 7 3.1161 -2.8477 -1.6683 15 6 3.2944 -3.2845 -2.9884 16 6 2.3081 -3.0479 -3.9395 17 9 1.1762 -2.3972 -3.5924 18 6 2.4890 -3.4758 -5.2420 19 6 3.6466 -4.1483 -5.5963 20 9 3.8194 -4.5696 -6.8682 21 6 4.6274 -4.3893 -4.6494 22 6 4.4539 -3.9585 -3.3471 23 35 5.7949 -4.2879 -2.0552 24 1 -0.3634 0.0254 1.0274 25 1 -0.3634 0.8770 -0.5357 26 1 -0.3634 -0.9024 -0.4916 27 1 -0.0367 3.1098 1.3840 28 1 1.6084 -2.0286 0.5129 29 1 3.1499 -1.1386 0.5134 30 1 3.4730 -3.3693 -0.9325 31 1 1.7252 -3.2890 -5.9824 32 1 5.5294 -4.9135 -4.9285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=GENORG IOFR=1.4345 ALPHA=0.00 BETA=0.00 GAMMA=38.93 & DIELEC=2.06 FACARB=0.00 FEHALO=0.00 DEV ZINC000068972529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:37 Heat of formation + Delta-G solvation = -52.899020 kcal Electronic energy + Delta-G solvation = -22404.739755 eV Core-core repulsion = 18470.433105 eV Total energy + Delta-G solvation = -3934.306650 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 1.00 seconds Orbital eigenvalues (eV) -49.19302 -48.75918 -40.07626 -38.38472 -35.34575 -34.44170 -32.48919 -31.39859 -29.95547 -29.34371 -27.02532 -25.82435 -23.49433 -23.04420 -21.59241 -20.10233 -18.22777 -17.96318 -17.43036 -16.72160 -16.55525 -15.93938 -15.81487 -15.10298 -14.94802 -14.84701 -14.40749 -14.21070 -13.83695 -13.66481 -13.40087 -13.05226 -12.77073 -12.31952 -11.85814 -11.78301 -11.34350 -10.93634 -10.87669 -10.75892 -10.68969 -10.45375 -10.25205 -10.01496 -9.92014 -9.43298 -9.08572 -8.53976 -8.19269 -6.90527 -5.80353 -3.19863 0.49101 0.71069 1.13150 2.84831 3.06393 3.29329 3.40937 3.47121 3.48587 3.78907 4.05385 4.44166 4.49475 4.52306 4.85855 5.20522 5.32225 5.43177 5.46166 5.55694 5.64119 5.72170 6.01090 6.17397 6.22779 6.63827 6.72777 7.34588 7.50453 7.62430 7.78999 8.28036 8.61835 9.14745 9.77019 10.22218 11.26561 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003713 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.904274 B = 7540.029566 C = 8405.023830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.163 3.837 2 N -0.570 5.570 3 C -0.257 4.257 4 H 0.069 0.931 5 C 0.007 3.993 6 N -0.901 5.901 7 Si 0.905 3.095 8 H -0.287 1.287 9 H -0.291 1.291 10 H -0.279 1.279 11 C 0.141 3.859 12 C 0.463 3.537 13 O -0.480 6.480 14 N -0.680 5.680 15 C 0.149 3.851 16 C 0.132 3.868 17 F -0.096 7.096 18 C -0.158 4.158 19 C 0.107 3.893 20 F -0.129 7.129 21 C -0.117 4.117 22 C -0.083 4.083 23 Br -0.019 7.019 24 H 0.030 0.970 25 H 0.051 0.949 26 H -0.001 1.001 27 H 0.254 0.746 28 H 0.074 0.926 29 H 0.085 0.915 30 H 0.412 0.588 31 H 0.155 0.845 32 H 0.152 0.848 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 9.398 -18.917 -8.217 22.665 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.018 3.982 2 N -0.289 5.289 3 C -0.386 4.386 4 H 0.086 0.914 5 C -0.191 4.191 6 N -0.545 5.545 7 Si 0.735 3.265 8 H -0.214 1.214 9 H -0.217 1.217 10 H -0.204 1.204 11 C 0.007 3.993 12 C 0.248 3.752 13 O -0.349 6.349 14 N -0.329 5.329 15 C 0.048 3.952 16 C 0.109 3.891 17 F -0.074 7.074 18 C -0.178 4.178 19 C 0.085 3.915 20 F -0.108 7.108 21 C -0.138 4.138 22 C -0.166 4.166 23 Br 0.066 6.934 24 H 0.048 0.952 25 H 0.070 0.930 26 H 0.017 0.983 27 H 0.064 0.936 28 H 0.092 0.908 29 H 0.103 0.897 30 H 0.249 0.751 31 H 0.173 0.827 32 H 0.170 0.830 Dipole moment (debyes) X Y Z Total from point charges 9.351 -18.220 -8.209 22.064 hybrid contribution 0.086 0.766 -0.585 0.967 sum 9.437 -17.455 -8.794 21.704 Atomic orbital electron populations 1.20834 0.81761 0.96862 0.98712 1.43636 1.02164 0.99764 1.83299 1.19138 0.96309 0.84679 1.38442 0.91352 1.24864 0.97889 0.98296 0.98101 1.70122 1.20403 1.27023 1.36984 0.86256 0.78621 0.83723 0.77949 1.21367 1.21731 1.20428 1.20632 0.98864 0.90815 0.88982 1.24375 0.75922 0.78433 0.96459 1.90738 1.46696 1.51364 1.46145 1.44649 1.58081 1.25930 1.04236 1.17635 0.91919 0.97820 0.87797 1.16917 0.83886 0.96292 0.92039 1.91713 1.46492 1.77106 1.92042 1.21079 0.99169 1.01503 0.96076 1.16926 0.94866 1.00060 0.79630 1.91532 1.95491 1.88032 1.35732 1.20836 1.00170 1.02315 0.90517 1.21081 0.93664 1.07394 0.94465 1.96762 1.48715 1.94759 1.53173 0.95199 0.93010 0.98258 0.93585 0.90770 0.89738 0.75098 0.82688 0.83018 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 35. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.16 4.09 9.00 59.84 0.54 4.62 16 2 N -0.57 -14.39 2.41 -182.50 -0.44 -14.83 16 3 C -0.26 -7.15 9.66 -15.06 -0.15 -7.29 16 4 H 0.07 1.89 7.90 -52.49 -0.41 1.48 16 5 C 0.01 0.20 4.96 -17.43 -0.09 0.12 16 6 N -0.90 -26.25 10.85 55.49 0.60 -25.64 16 7 Si 0.90 22.36 29.59 -169.99 -5.03 17.33 16 8 H -0.29 -7.20 7.11 56.52 0.40 -6.80 16 9 H -0.29 -7.13 7.11 56.52 0.40 -6.73 16 10 H -0.28 -6.74 7.11 56.52 0.40 -6.33 16 11 C 0.14 2.72 6.14 -5.19 -0.03 2.69 16 12 C 0.46 8.75 7.35 -10.99 -0.08 8.67 16 13 O -0.48 -11.18 12.86 5.54 0.07 -11.10 16 14 N -0.68 -9.79 5.03 -9.76 -0.05 -9.84 16 15 C 0.15 2.09 6.28 -83.52 -0.52 1.57 16 16 C 0.13 1.98 6.69 -39.26 -0.26 1.72 16 17 F -0.10 -1.77 13.42 2.25 0.03 -1.74 16 18 C -0.16 -1.91 10.00 -39.47 -0.39 -2.30 16 19 C 0.11 1.16 7.30 -39.41 -0.29 0.88 16 20 F -0.13 -1.38 17.26 2.25 0.04 -1.34 16 21 C -0.12 -1.19 9.76 -39.50 -0.39 -1.57 16 22 C -0.08 -0.95 6.24 -39.35 -0.25 -1.20 16 23 Br -0.02 -0.19 32.46 -68.01 -2.21 -2.40 16 24 H 0.03 0.77 7.63 -51.93 -0.40 0.38 16 25 H 0.05 1.43 6.99 -51.93 -0.36 1.07 16 26 H 0.00 -0.03 8.06 -51.93 -0.42 -0.45 16 27 H 0.25 7.16 8.31 -40.82 -0.34 6.82 16 28 H 0.07 1.22 8.07 -51.93 -0.42 0.80 16 29 H 0.08 1.50 8.04 -51.93 -0.42 1.08 16 30 H 0.41 4.63 7.83 -40.82 -0.32 4.31 16 31 H 0.16 1.59 8.06 -52.48 -0.42 1.17 16 32 H 0.15 1.17 8.06 -52.49 -0.42 0.75 16 LS Contribution 307.52 15.07 4.63 4.63 Total: -1.00 -32.50 307.52 -6.99 -39.48 By element: Atomic # 1 Polarization: 0.27 SS G_CDS: -2.73 Total: -2.46 kcal Atomic # 6 Polarization: 9.81 SS G_CDS: -1.91 Total: 7.90 kcal Atomic # 7 Polarization: -50.42 SS G_CDS: 0.11 Total: -50.31 kcal Atomic # 8 Polarization: -11.18 SS G_CDS: 0.07 Total: -11.10 kcal Atomic # 9 Polarization: -3.15 SS G_CDS: 0.07 Total: -3.08 kcal Atomic # 14 Polarization: 22.36 SS G_CDS: -5.03 Total: 17.33 kcal Atomic # 35 Polarization: -0.19 SS G_CDS: -2.21 Total: -2.40 kcal Total LS contribution 4.63 Total: 4.63 kcal Total: -32.50 -6.99 -39.48 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -13.418 kcal (2) G-P(sol) polarization free energy of solvation -32.496 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -45.913 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy -6.986 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -39.481 kcal (6) G-S(sol) free energy of system = (1) + (5) -52.899 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 1.00 seconds