Wall clock time and date at job start Wed Apr 1 2020 05:24:36 AMSOL-version 7.1 by G. D. Hawkins, D. J. Giesen, G. C. Lynch, C. C. Chambers, I. Rossi, J. W. Storer, J. Li, J. D. Thompson, P. Winget, B. J. Lynch, D. Rinaldi, D. A. Liotard, C. J. Cramer, and D. G. Truhlar Copyright 2004 by Regents of the University of Minnesota. All rights reserved. Notice: recipients of this code are asked to comply with the user agreement in Section 1 of the documentation file. ******************************************************************************* * 1SCF - SCF CALCULATION WITHOUT GEOMETRY OPTIMIZATION * - USE EF ROUTINE FOR MINIMUM SEARCH (DEFAULT) * GEO-OK - OVERRIDE INTERATOMIC DISTANCE CHECK * TLIMIT= - A TIME OF 15. SECONDS REQUESTED * CHARGE - CHARGE ON SYSTEM= -1 * AM1 - THE AM1 HAMILTONIAN TO BE USED * SM5.42R - SM5.42R CALCULATIONS WILL BE PERFORMED * - CHARGE MODEL 2 WILL BE USED (CM2A) * - THE SOLVENT IS WATER ******************************************************************************* Atom NO. Chemical Bond length Bond angle Dihedral angle number (k) symbol (angstroms) (degrees) (degrees) (I) NA:I NB:NA:I NC:NB:NA:I NA NB NC 1 1 C 2 2 N 1.46495 * 1 3 3 C 1.36935 * 119.99930 * 2 1 4 4 H 1.07996 * 120.00299 * 199.24826 * 3 2 1 5 5 C 1.38816 * 120.00085 * 19.25404 * 3 2 1 6 6 N 1.31624 * 119.99739 * 18.65958 * 5 3 2 7 7 Si 1.86794 * 120.00070 * 198.66652 * 5 3 2 8 8 H 1.48505 * 109.47449 * 89.99824 * 7 5 3 9 9 H 1.48505 * 109.47163 * 209.99756 * 7 5 3 10 10 H 1.48499 * 109.47105 * 329.99805 * 7 5 3 11 11 C 1.46503 * 120.00226 * 180.02562 * 2 1 3 12 12 C 1.50702 * 109.47126 * 89.99979 * 11 2 1 13 13 O 1.21296 * 119.99668 * 0.02562 * 12 11 2 14 14 N 1.34774 * 119.99610 * 179.72527 * 12 11 2 15 15 C 1.40184 * 119.99684 * 176.96518 * 14 12 11 16 16 C 1.39046 * 120.06007 * 325.93813 * 15 14 12 17 17 F 1.35101 * 120.03388 * 359.97438 * 16 15 14 18 18 C 1.38286 * 119.92383 * 179.77028 * 16 15 14 19 19 C 1.38487 * 120.03795 * 0.50161 * 18 16 15 20 20 F 1.35097 * 119.94671 * 179.76981 * 19 18 16 21 21 C 1.38441 * 120.11443 * 359.75008 * 19 18 16 22 22 C 1.38258 * 120.07291 * 359.97438 * 21 19 18 23 23 Br 1.89102 * 120.01693 * 180.02562 * 22 21 19 24 24 H 1.09006 * 109.47509 * 271.41450 * 1 2 3 25 25 H 1.08997 * 109.47456 * 31.41701 * 1 2 3 26 26 H 1.09000 * 109.47245 * 151.41823 * 1 2 3 27 27 H 0.96997 * 119.99359 * 179.97438 * 6 5 3 28 28 H 1.08999 * 109.46974 * 330.00077 * 11 2 1 29 29 H 1.08998 * 109.46895 * 210.00293 * 11 2 1 30 30 H 0.96999 * 120.00090 * 356.97241 * 14 12 11 31 31 H 1.08003 * 119.97924 * 180.24971 * 18 16 15 32 32 H 1.07994 * 119.96078 * 180.02562 * 21 19 18 Note: An asterisk (*) indicates this parameter was or will be optimized. Cartesian coordinates (angstroms) NO. Atom X Y Z 1 6 0.0000 0.0000 0.0000 2 7 1.4650 0.0000 0.0000 3 6 2.1496 1.1859 0.0000 4 1 3.1843 1.2121 -0.3083 5 6 1.5138 2.3545 0.3964 6 7 0.4073 2.2932 1.1067 7 14 2.2282 4.0138 -0.0783 8 1 1.6616 4.4419 -1.3826 9 1 1.8865 5.0161 0.9628 10 1 3.7046 3.9026 -0.1927 11 6 2.1975 -1.2687 -0.0006 12 6 2.4487 -1.7031 -1.4216 13 8 2.0549 -1.0198 -2.3432 14 7 3.1161 -2.8477 -1.6683 15 6 3.2944 -3.2845 -2.9884 16 6 2.3081 -3.0479 -3.9395 17 9 1.1762 -2.3972 -3.5924 18 6 2.4890 -3.4758 -5.2420 19 6 3.6466 -4.1483 -5.5963 20 9 3.8194 -4.5696 -6.8682 21 6 4.6274 -4.3893 -4.6494 22 6 4.4539 -3.9585 -3.3471 23 35 5.7949 -4.2879 -2.0552 24 1 -0.3634 0.0254 1.0274 25 1 -0.3634 0.8770 -0.5357 26 1 -0.3634 -0.9024 -0.4916 27 1 -0.0367 3.1098 1.3840 28 1 1.6084 -2.0286 0.5129 29 1 3.1499 -1.1386 0.5134 30 1 3.4730 -3.3693 -0.9325 31 1 1.7252 -3.2890 -5.9824 32 1 5.5294 -4.9135 -4.9285 RHF calculation, no. of doubly occupied orbitals= 52 REFERENCES FOR PARAMETERS IN GAS-PHASE HAMILTONIAN: H: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) C: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) N: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) O: (AM1): M.J.S. DEWAR ET AL, J. AM. CHEM. SOC. 107 3902-3909 (1985) F: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). Si: (AM1): M.J.S.DEWAR, C. JIE, ORGANOMETALLICS, 6, 1486-1490 (1987). Br: (AM1): M.J.S. DEWAR AND E. G. ZOEBISCH, THEOCHEM, 180, 1 (1988). REFERENCE FOR CHARGE MODEL 2: J. Li, J. Xing, C. J. Cramer, and D. G. Truhlar, J. Chem. Phys. 111 (1999) 885. REFERENCE FOR THE PARAMETERIZATION OF THE SM5.42R SOLVATION MODEL: J. Li, T. Zhu, G. D. Hawkins, P. Winget, D. A. Liotard, C. J. Cramer, and D. G. Truhlar, Theor. Chem. Acc. 103 (1999) 9-63 P. Winget, J. D. Thompson C. J. Cramer,and D. G. Truhlar, J. Phys. Chem. B. submitted. CHARGE=-1 AM1 1SCF TLIMIT=15 GEO-OK SM5.42R & SOLVNT=WATER ZINC000068972529.mol2 32 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED SCF FIELD WAS ACHIEVED Wall clock time and date at job start Wed Apr 1 2020 05:24:36 Heat of formation + Delta-G solvation = -72.956048 kcal Electronic energy + Delta-G solvation = -22405.609493 eV Core-core repulsion = 18470.433105 eV Total energy + Delta-G solvation = -3935.176388 eV No. of doubly occupied orbitals = 52 Molecular weight (most abundant/longest-lived isotopes) = 348.003 amu Computer time = 0.40 seconds Orbital eigenvalues (eV) -50.08202 -49.96996 -41.32308 -39.62081 -37.17144 -35.78242 -33.45261 -33.34787 -30.98236 -30.49306 -28.60034 -27.87092 -24.70266 -24.18112 -23.17937 -21.52222 -19.34494 -19.12452 -18.66985 -18.57277 -17.79146 -16.99139 -16.83641 -16.82346 -16.33212 -16.15239 -15.71174 -15.45076 -15.26507 -15.05433 -14.88730 -14.51342 -13.94995 -13.85074 -13.33419 -13.16752 -12.85399 -12.75226 -12.58857 -12.37460 -12.04529 -11.92973 -11.82882 -11.54690 -11.45674 -11.03517 -10.59256 -10.02593 -9.28980 -8.91121 -7.90656 -5.31666 -0.46848 -0.28019 0.23003 1.42225 1.47363 1.53897 1.63602 1.84680 2.12067 2.49106 2.80769 3.06983 3.26282 3.49484 3.61997 3.64304 3.87763 4.13443 4.34606 4.50934 4.53672 4.63388 4.64864 4.73362 4.77437 5.18350 5.29144 5.53916 5.54504 5.64589 6.19172 6.33474 7.06768 7.21472 7.77590 8.18563 9.15103 Molecular weight = 348.00amu Principal moments of inertia in cm(-1) A = 0.014899 B = 0.003713 C = 0.003331 Principal moments of inertia in units of 10**(-40)*gram-cm**2 A = 1878.904274 B = 7540.029566 C = 8405.023830 Net atomic charges, atomic populations, and dipole contributions calculated with CM2 Atom NO. Type Charge No. of electrons 1 C 0.180 3.820 2 N -0.592 5.592 3 C -0.260 4.260 4 H 0.066 0.934 5 C -0.046 4.046 6 N -0.930 5.930 7 Si 0.961 3.039 8 H -0.295 1.295 9 H -0.288 1.288 10 H -0.268 1.268 11 C 0.136 3.864 12 C 0.472 3.528 13 O -0.529 6.529 14 N -0.664 5.664 15 C 0.129 3.871 16 C 0.101 3.899 17 F -0.123 7.123 18 C -0.155 4.155 19 C 0.116 3.884 20 F -0.124 7.124 21 C -0.101 4.101 22 C -0.079 4.079 23 Br 0.002 6.998 24 H 0.016 0.984 25 H 0.015 0.985 26 H 0.020 0.980 27 H 0.250 0.750 28 H 0.106 0.894 29 H 0.103 0.897 30 H 0.427 0.573 31 H 0.168 0.832 32 H 0.184 0.816 For the charges calculated by CM2: Dipole moment (debyes) X Y Z Total from point charges 11.605 -20.758 -8.974 25.419 Note: The Mulliken population analysis charges presented below were not used in the solvation calculation but are provided for completeness. The chosen solvation model uses CM2 partial charges for calculating solvation energies. Net atomic charges, atomic populations, and dipole contributions using Mulliken population analysis Atom NO. Type Charge No. of electrons 1 C 0.035 3.965 2 N -0.312 5.312 3 C -0.390 4.390 4 H 0.083 0.917 5 C -0.241 4.241 6 N -0.576 5.576 7 Si 0.789 3.211 8 H -0.223 1.223 9 H -0.214 1.214 10 H -0.192 1.192 11 C 0.005 3.995 12 C 0.258 3.742 13 O -0.402 6.402 14 N -0.313 5.313 15 C 0.029 3.971 16 C 0.078 3.922 17 F -0.102 7.102 18 C -0.175 4.175 19 C 0.095 3.905 20 F -0.102 7.102 21 C -0.122 4.122 22 C -0.162 4.162 23 Br 0.088 6.912 24 H 0.035 0.965 25 H 0.034 0.966 26 H 0.039 0.961 27 H 0.060 0.940 28 H 0.124 0.876 29 H 0.121 0.879 30 H 0.267 0.733 31 H 0.186 0.814 32 H 0.201 0.799 Dipole moment (debyes) X Y Z Total from point charges 11.622 -20.151 -8.971 24.932 hybrid contribution -0.471 1.117 -0.455 1.295 sum 11.150 -19.034 -9.426 23.989 Atomic orbital electron populations 1.20518 0.82395 0.96100 0.97446 1.43764 1.02203 1.01126 1.84115 1.19365 0.96338 0.86089 1.37222 0.91659 1.25558 0.98673 1.01196 0.98684 1.70232 1.21678 1.27312 1.38366 0.85365 0.78457 0.80248 0.76982 1.22281 1.21401 1.19248 1.20919 0.99719 0.89310 0.89579 1.23726 0.75859 0.79153 0.95458 1.90734 1.49001 1.53272 1.47199 1.44071 1.57068 1.24799 1.05409 1.17736 0.92947 0.99295 0.87073 1.17292 0.83801 0.97634 0.93510 1.91637 1.47993 1.78109 1.92414 1.21208 1.00032 1.00936 0.95324 1.16930 0.94455 0.99220 0.79921 1.91557 1.95385 1.87823 1.35443 1.21177 1.00682 1.00839 0.89502 1.21202 0.93196 1.06261 0.95515 1.96801 1.47404 1.94533 1.52476 0.96544 0.96648 0.96114 0.94036 0.87595 0.87908 0.73269 0.81424 0.79903 Number of geometries 1 Number of calculations of the screened coulomb radii 1 The total number of SCF iterations 16. Note: The number of geometries may not correspond to the number of cycles due to rejected geometry changes. In the following table subtotal= G_P + SS G_CDS. Atom Chem. CM2 G_P Area Sigma k SS G_CDS Subtotal M number symbol chg. (kcal) (Ang**2) cal/(Ang**2) (kcal) (kcal) value 1 C 0.18 9.25 9.00 127.77 1.15 10.40 16 2 N -0.59 -30.00 2.41 -731.31 -1.77 -31.76 16 3 C -0.26 -14.60 9.66 84.03 0.81 -13.79 16 4 H 0.07 3.62 7.90 -2.91 -0.02 3.59 16 5 C -0.05 -2.60 4.96 84.86 0.42 -2.18 16 6 N -0.93 -55.39 10.85 21.65 0.24 -55.15 16 7 Si 0.96 46.54 29.59 68.60 2.03 48.57 16 8 H -0.30 -14.59 7.11 99.48 0.71 -13.88 16 9 H -0.29 -13.66 7.11 99.48 0.71 -12.95 16 10 H -0.27 -12.33 7.11 99.48 0.71 -11.62 16 11 C 0.14 5.09 6.14 85.63 0.53 5.62 16 12 C 0.47 17.52 7.35 87.66 0.64 18.16 16 13 O -0.53 -24.89 12.86 -3.08 -0.04 -24.93 16 14 N -0.66 -18.12 5.03 -303.19 -1.52 -19.64 16 15 C 0.13 3.44 6.28 38.14 0.24 3.68 16 16 C 0.10 2.97 6.69 22.48 0.15 3.13 16 17 F -0.12 -4.66 13.42 44.97 0.60 -4.06 16 18 C -0.15 -3.53 10.00 22.34 0.22 -3.31 16 19 C 0.12 2.22 7.30 22.38 0.16 2.38 16 20 F -0.12 -2.27 17.26 44.97 0.78 -1.49 16 21 C -0.10 -1.70 9.76 22.32 0.22 -1.48 16 22 C -0.08 -1.59 6.24 22.42 0.14 -1.45 16 23 Br 0.00 0.04 32.46 -20.37 -0.66 -0.62 16 24 H 0.02 0.87 7.63 -2.38 -0.02 0.85 16 25 H 0.01 0.85 6.99 -2.39 -0.02 0.84 16 26 H 0.02 0.94 8.06 -2.39 -0.02 0.92 16 27 H 0.25 14.46 8.31 -92.71 -0.77 13.69 16 28 H 0.11 3.26 8.07 -2.39 -0.02 3.24 16 29 H 0.10 3.45 8.04 -2.39 -0.02 3.43 16 30 H 0.43 8.65 7.83 -92.71 -0.73 7.92 16 31 H 0.17 3.27 8.06 -2.91 -0.02 3.24 16 32 H 0.18 1.95 8.06 -2.91 -0.02 1.92 16 Total: -1.00 -71.55 307.52 4.80 -66.75 By element: Atomic # 1 Polarization: 0.73 SS G_CDS: 0.46 Total: 1.20 kcal Atomic # 6 Polarization: 16.46 SS G_CDS: 4.69 Total: 21.14 kcal Atomic # 7 Polarization: -103.51 SS G_CDS: -3.06 Total: -106.56 kcal Atomic # 8 Polarization: -24.89 SS G_CDS: -0.04 Total: -24.93 kcal Atomic # 9 Polarization: -6.92 SS G_CDS: 1.38 Total: -5.54 kcal Atomic # 14 Polarization: 46.54 SS G_CDS: 2.03 Total: 48.57 kcal Atomic # 35 Polarization: 0.04 SS G_CDS: -0.66 Total: -0.62 kcal Total: -71.55 4.80 -66.75 kcal The number of atoms in the molecule is 32 The average number of expansion shells was 16.00 The maximum number of expansion shells was 16 The minimum number of expansion shells was 16 **** NOTA BENE **** This is the net solvation energy for this exact molecular structure (nuclear and electronic)! The standard-state solvation energy should be obtained as the difference between the heat of formation plus delta-G solvation for the relaxed solvated system and that for the relaxed gas-phase system. ZINC000068972529.mol2 32 1SCF run This is a breakdown of the solvation energy calculated without geometric relaxation in solution: (1) E-EN(sol) electronic-nuclear energy of solute -6.204 kcal (2) G-P(sol) polarization free energy of solvation -71.553 kcal (3) G-ENP(sol) elect.-nuc.-pol. free energy of system -77.758 kcal (4) G-CDS(sol) cavity-dispersion-solvent structure free energy 4.802 kcal (5) G-P-CDS(sol) = G-P(sol) + G-CDS(sol) = (2) + (4) -66.752 kcal (6) G-S(sol) free energy of system = (1) + (5) -72.956 kcal 1SCF WAS SPECIFIED, SO GEOMETRY OPTIMIZATION WAS NOT USED Total computer time = 0.40 seconds